TM-1

Germplasm Overview
NameTM-1
Aliasacc. TM-1 [view all 10]
GRIN IDN/A
TypeBreeding Germplasm
SpeciesGossypium hirsutum
DescriptionN/A
Origin CountryUnited States
Origin DetailN/A
PedigreeN/A
Maternal ParentN/A
Paternal ParentN/A
Maternal Parent ofTM-1 x 3-79, F2 [view all 109]
Paternal Parent of7235 x TM-1, RIL [view all 10]
Phenotypic Data[view all 152]
SSR Genotype DataN/A
SNP Genotype Data[view all 1719]
Map[view all 22]
DNA Library[view all 13 ]
Sequence[view all 170938 ]
CommentsN/A
ReferenceMasonbrink RE, Gallagher JP, Jareczek JJ, Renny-Byfield S, Grover CE, Gong L, Wendel JF. CenH3 evolution in diploids and polyploids of three angiosperm genera. BMC Plant Biol. 2014 Dec 30;14:383. doi: 10.1186/s12870-014-0383-3.
Alias
Synonym
acc. TM-1
Accession 'TM-1'
Texas Maker-1 (TM-1)
Texas Marker 1
Texas Marker1
Texas Marker-1
Texas-marker 1 (TM1)
TM 1
TM1
ISC451819
Phenotypic Data
Phenotypic Data
Total 152 trait scores
Download Table
# Dataset Descriptor Value Environment Replication Plot
1AD1-NBI_root-traits_CRI-Chen-2022_PHENOmain stem diameter (mm)2.02CN_HA_GH_Hyd1
2AD1-NBI_root-traits_CRI-Chen-2022_PHENOplant height (cm)7.33CN_HA_GH_Hyd1
3AD1-NBI_root-traits_CRI-Chen-2022_PHENOmain stem dry weight (g)0.0343CN_HA_GH_Hyd1
4AD1-NBI_root-traits_CRI-Chen-2022_PHENOleaf area (cm2)62.32CN_HA_GH_Hyd1
5AD1-NBI_root-traits_CRI-Chen-2022_PHENOLRL (cm)675.7791CN_HA_GH_Hyd1
6AD1-NBI_root-traits_CRI-Chen-2022_PHENOLRSA (cm2)71.0379CN_HA_GH_Hyd1
7AD1-NBI_root-traits_CRI-Chen-2022_PHENOLRV (cm3)0.3897CN_HA_GH_Hyd1
8AD1-NBI_root-traits_CRI-Chen-2022_PHENOPRAD (mm)1.251CN_HA_GH_Hyd1
9AD1-NBI_root-traits_CRI-Chen-2022_PHENOPRL (cm)22.5208CN_HA_GH_Hyd1
10AD1-NBI_root-traits_CRI-Chen-2022_PHENOPRL005 (cm)0.3377CN_HA_GH_Hyd1
11AD1-NBI_root-traits_CRI-Chen-2022_PHENOPRL0520 (cm)19.0218CN_HA_GH_Hyd1
12AD1-NBI_root-traits_CRI-Chen-2022_PHENOPRL2045 (cm)3.1613CN_HA_GH_Hyd1
13AD1-NBI_root-traits_CRI-Chen-2022_PHENOPRPA (cm2)2.6237CN_HA_GH_Hyd1
14AD1-NBI_root-traits_CRI-Chen-2022_PHENOPRPA005 (cm2)0.0086CN_HA_GH_Hyd1
15AD1-NBI_root-traits_CRI-Chen-2022_PHENOPRPA0520 (cm2)1.7427CN_HA_GH_Hyd1
16AD1-NBI_root-traits_CRI-Chen-2022_PHENOPRPA2045 (cm2)0.8723CN_HA_GH_Hyd1
17AD1-NBI_root-traits_CRI-Chen-2022_PHENOPRSA (cm2)8.2425CN_HA_GH_Hyd1
18AD1-NBI_root-traits_CRI-Chen-2022_PHENOPRSA005 (cm2)0.0271CN_HA_GH_Hyd1
19AD1-NBI_root-traits_CRI-Chen-2022_PHENOPRSA0520 (cm2)5.475CN_HA_GH_Hyd1
20AD1-NBI_root-traits_CRI-Chen-2022_PHENOPRSA2045 (cm2)2.7404CN_HA_GH_Hyd1
21AD1-NBI_root-traits_CRI-Chen-2022_PHENOPRV (cm3)0.3317CN_HA_GH_Hyd1
22AD1-NBI_root-traits_CRI-Chen-2022_PHENOPRV005 (cm3)0.0002CN_HA_GH_Hyd1
23AD1-NBI_root-traits_CRI-Chen-2022_PHENOPRV0520 (cm3)0.1403CN_HA_GH_Hyd1
24AD1-NBI_root-traits_CRI-Chen-2022_PHENOPRV2045 (cm3)0.1917CN_HA_GH_Hyd1
25AD1-NBI_root-traits_CRI-Chen-2022_PHENORDW (g)0.044CN_HA_GH_Hyd1
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Library
Name Details
Gossypium hirsutum 24 days postanthesis secondary-stage fibers
Tissue Type : seed epidermal cells
Developmental Stage : 24 days postanthesis secondary-stage fibers
pGH
Vector Type : plasmid
Vector : pUC(019)
Cloning Site : 1: Pst1
Tissue Type : Leaves
Pst1-M fragment
Vector Type : BAC; plasmid
Vector : pUC(019)
Cloning Site : 1: Pst1
Tissue Type : Leaves
Host : DH5-alpha
Pst1-P fragment
Vector Type : BAC; plasmid
Vector : pUC(019)
Cloning Site : 1: Pst1
Tissue Type : Leaves
Host : DH5-alpha
cotton fiber suppression subtractive hybridization Library
Tissue Type : fiber
Developmental Stage : 10 and 20 days post anthesis (dpa)
Gossypium hirsutum cv. TM-1 embryoid one month after subculture
Tissue Type : embryoid
Developmental Stage : one month after subculture
GH_TMO
Vector Type : plasmid
Vector : pCMV-SPORT6.1
Cloning Site : 1: EcoRI; 2: NotI
Tissue Type : Immature ovules
Developmental Stage : Immature ovules (-3 to 3 days post anthesis, DPA) with or without fibers
Comments :
Gossypium hirsutum cv. TM-1 embryoid callus
Tissue Type : embryoid callus
Comments : note=genotype: AD
Cotton fiber suppression subtractive hybridization cDNA library
Tissue Type : fiber
Developmental Stage : 9 days post anthesis (dpa)
Comments : The library was constructed using PCR-select cDNA subtraction method with 9 dpa cotton fiber as tester and leaf as driver
BAC and BIBAC libraries from Upland cotton genetic standard TM-1
Vector Type : BAC; plasmid
Vector : pCLD04541; pBeloBAC11
Tissue Type : young leaves
Host : DH10B
Comments : For more details on library construction, ordering clones and sequence analysis see http://algodon.tamu.edu/htdocs-cotton/cottondb.html
Plasmid, BAC and BIBAC libraries from upland cotton genetic standard TM-1
Vector Type : plasmid
Vector : pCLD04541; pBeloBAC11; pGEM11
Cloning Site : 1: BamHI; HindIII; EcoRI
Tissue Type : young leaves
Comments : For more details on library construction, ordering clones and sequence analysis see http://algodon.tamu.edu/htdocs-cotton/cottondb.html
Upland cotton TM-1
Vector Type : BAC; plasmid
Vector : 1:pCLD04541; 2:pBeloBAC11; 3:pGEM11
Tissue Type : young leaves
Comments : microsatellite oligos were used as probes to screen the BAC and BIBAC cotton libraries, those positive clones were subcloned and hybridized again with oligos. positive sub clones were sequenced and SSR primers were designed from those sequences
Gossypium hirsutum BIBAC Library
Vector : pCLD04541
Publications
YearPublication
2014Masonbrink RE, Gallagher JP, Jareczek JJ, Renny-Byfield S, Grover CE, Gong L, Wendel JF. CenH3 evolution in diploids and polyploids of three angiosperm genera. BMC Plant Biol. 2014 Dec 30;14:383. doi: 10.1186/s12870-014-0383-3.
Snp Genotype Data
Total 1,719 records
Download Table
#DatasetMarker NameAlleleGenotype
1UCD_SNP_genotype_2009UCD_cg10004_797G/AG|G
2UCD_SNP_genotype_2009UCD_cg10004_824T/AT|T
3UCD_SNP_genotype_2009UCD_cg10005_307A/GA|A
4UCD_SNP_genotype_2009UCD_cg10005_555C/TC|C
5UCD_SNP_genotype_2009UCD_cg10005_602C/AC|C
6UCD_SNP_genotype_2009UCD_cg10010_234T/CT|T
7UCD_SNP_genotype_2009UCD_cg10010_256T/CT|T
8UCD_SNP_genotype_2009UCD_cg10010_405A/GA|A
9UCD_SNP_genotype_2009UCD_cg10010_475C/TT|T
10UCD_SNP_genotype_2009UCD_cg10010_529C/AC|C
11UCD_SNP_genotype_2009UCD_cg10011_47T/AT|T
12UCD_SNP_genotype_2009UCD_cg10011_386G/AG|G
13UCD_SNP_genotype_2009UCD_cg10021_66G/AG|G
14UCD_SNP_genotype_2009UCD_cg10021_73C/TC|C
15UCD_SNP_genotype_2009UCD_cg10021_100C/GC|C
16UCD_SNP_genotype_2009UCD_cg10021_169C/TC|C
17UCD_SNP_genotype_2009UCD_cg10021_287C/TC|C
18UCD_SNP_genotype_2009UCD_cg10021_304G/AG|G
19UCD_SNP_genotype_2009UCD_cg10021_343T/CT|T
20UCD_SNP_genotype_2009UCD_cg10021_385T/AT|T
21UCD_SNP_genotype_2009UCD_cg10021_472C/TC|C
22UCD_SNP_genotype_2009UCD_cg10021_481A/GA|A
23UCD_SNP_genotype_2009UCD_cg10021_546A/GA|A
24UCD_SNP_genotype_2009UCD_cg10021_595C/TC|C
25UCD_SNP_genotype_2009UCD_cg10027_548A/GA|A
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Maternal Parent Of
Germplasm Name Description Type
TM-1 x 3-79, F2phenotype data used in T#-RIL QTL analysispopulation
TM-1 x 3-79, RILgenetic mappingpopulation
TM-1 x Hai-7124, BC1genetic mappingpopulation
TM-1 x NM24016, RIL

genetic mapping

population
TM-1 x WT-936, F2genetic mappingpopulation
TM-1 x Hai-7124, F2genetic mappingpopulation
TN-RIL-03recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-06recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-08recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-09recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-11recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-12recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-13recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-20recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-22recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-24recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-27recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-28recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-35recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-37recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-38recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-41recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-43recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-46recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-47recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-53recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-58recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-73recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-79recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-83recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-87recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-88recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-92recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-94recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-95recombinant inbred line (RIL) of TM-1 x NM24016accession
TN-RIL-96recombinant inbred line (RIL) of TM-1 x NM24016accession
T3-RIL-014recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-015recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-020recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-029recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-030recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-034recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-036recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-037recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-046recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-047recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-049recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-050recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-051recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-053recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-054recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-055recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-058recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-059recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-066recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-077recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-078recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-081recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-086recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-091recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-094recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-096recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-100recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-101recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-107recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-108recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-110recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-117recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-119recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-123recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-125recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-127recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-129recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-132recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-137recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-138recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-141recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-142recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-143recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-144recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-145recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-147recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-148recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-152recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-153recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-154recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-158recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-160recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-163recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-164recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-168recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-175recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-180recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-181recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-182recombinant inbred line (RIL) of TM-1 x 3-79accession
T3-RIL-183recombinant inbred line (RIL) of TM-1 x 3-79accession
TM-1 x Hai-1, F2population
H18 x TM-1, F2population
TM-1 x Hai-7124, BC1S1population
TN-RIL-54accession
TN-RIL-26accession
TN-RIL-59accession
TN-RIL-14accession
TM-1 x Hai-7124, CSILpopulation
TM-1 x TX-0256, CSILpopulation
TM-1 x TX-1046, CSILpopulation
TM-1 x (TX-0256 + TX-1046), CSILpopulation
TM-1 x Li1, F2population
TM-1 x im, F2population
Paternal Parent Of
Germplasm Name Description Type
7235 x TM-1, RILgenetic mappingpopulation
3-79 x TM-1, F2population
7235 x TM-1, F2population
7235 x TM-1, F2:3population
HS427-10 x TM-1, F2population
HS427-10 x TM-1, F2:3population
H18 x TM-1, F2population
Baimian 1 x TM-1 , F2:3population
IL138-A11-3 x TM-1, F2:3population
W10 x TM-1, F2:3population