HAU3233, HAU3233 (genetic_marker) gossypium spp

Marker Overview
NameHAU3233
Genbank IDGR716890
TypeSSR
SpeciesGossypium spp.
Source SequenceGR708928.1
Source TypeEST
Repeat Motif(TG)10
PCR ConditionAnnealing temperature: 57.7
Primer 1HAU3233_F: CCGTCGCCGGACCTTTCTTT
Primer 2HAU3233_R: TCCCCTGGTTCTGGAGCAGC
Product Length260
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGR716890
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A02chromosomeA02:90047034..90047293 +
D03chromosomeD03:358969..359224 -
CM018203.1chromosomeCM018203.1:99536676..99536935 +
CM018217.1chromosomeCM018217.1:324122..324380 -
D5_02chromosomeD5_02:299117..299377 -
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:447427..447697 -
D10_02chromosomeD10_02:290930..291208 -
CM016615.1chromosomeCM016615.1:348084..348347 -
At_chr4chromosomeAt_chr4:23357713..23357972 +
scaffold1977.1supercontigscaffold1977.1:315289..315544 -
A02chromosomeA02:83053088..83053347 +
D03chromosomeD03:316513..316768 -
Ghir_A02chromosomeGhir_A02:107701281..107701540 +
Ghir_D03chromosomeGhir_D03:320453..320708 -
A02chromosomeA02:107898908..107899167 +
D03chromosomeD03:322105..322360 -
A02chromosomeA02:105358691..105358950 +
D03chromosomeD03:317644..317899 -
A02chromosomeA02:103939811..103940070 +
D03chromosomeD03:322479..322734 -
At02chromosomeAt02:89466481..89466740 +
At02chromosomeAt02:89457605..89457864 +
scaffold28823supercontigscaffold28823:54521..54779 +
scaffold23613supercontigscaffold23613:141930..142189 +
scaffold23613supercontigscaffold23613:133054..133313 +
Gbar_A02chromosomeGbar_A02:99830346..99830605 +
Gbar_D03chromosomeGbar_D03:316935..317193 -
A02chromosomeA02:101767833..101768092 +
D03chromosomeD03:324253..324510 -
CM017611.1chromosomeCM017611.1:104744690..104744949 +
CM017625.1chromosomeCM017625.1:322332..322590 -
CM017637.1chromosomeCM017637.1:109536615..109536874 +
CM017651.1chromosomeCM017651.1:376553..376812 -
CM017689.1chromosomeCM017689.1:101919236..101919495 +
CM017703.1chromosomeCM017703.1:346243..346500 -
A02chromosomeA02:107845908..107846167 +
D03chromosomeD03:350486..350741 -
Chr02chromosomeChr02:92554828..92555098 +
Chr02chromosomeChr02:102155868..102156140 +
Chr02chromosomeChr02:309819..310079 -
B_04chromosomeB_04:73556827..73557095 +
Chr03chromosomeChr03:313271..313550 -
Chr_03chromosomeChr_03:281537..281912 -
Chr03chromosomeChr03:311620..311892 -
Chr03chromosomeChr03:255936..256252 -
Chr03chromosomeChr03:229724..229992 -
Chr03chromosomeChr03:300111..300372 -
E02chromosomeE02:89392..89655 -
F02chromosomeF02:281636..281888 -
Chr02chromosomeChr02:139280994..139281260 +
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GR708928.1GR708928.1Gossypium spp.sequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch02_At.02N/A10.9HAU3233View
2Yumian-1 x T586, RIL (2015)AD_ch02_At.02N/A131.3HAU3233View
3Yumian-1 x 7235, RIL (2015)AD_ch02_At.02N/A98.8HAU3233View
4CCRI-35 x Yumian-1, RIL (2015)AD_ch02_At.02N/A2.1HAU3233View
5CCRI-35 x Yumian-1, RIL (2017)AD_ch02_At.02N/A119.12HAU3233View
Sequence
>HAU3233 ID=HAU3233; Name=HAU3233; organism=Gossypium spp.; type=genetic_marker; length=260bp
CCGTCGCCGGACCTTTCTTTTTGTCCTCTGTTCTTCTCTCCGGTTCTGTT
TTTTTGTGTGTGTGTGTGTGTGTGCGCTTTGAAAATGGAGGAAGAAGGGT
CGAAGCAGGTGATTTACCTTTACGGTGATTTGGATTTAACCATTATTGAA
GCTCGGAAGCTACCTAACATGGATTTAGTGTCTAATCATCTTCGTAAATG
CTTAACTTGTGAGACCTGTAAAACTCCTTCACAAGCAGCAGCTGCTCCAG
AACCAGGGGA