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Marker Overview
Name | NAU3995 |
Alias | NAU1167=NAU3995
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Genbank ID | CO128067 |
Type | SSR |
Species | Gossypium raimondii |
Source Type | EST |
Repeat Motif | (gatagg)5 |
PCR Condition | Annealing temperature: 57 |
Primer 1 | NAU3995_F: CTGACTTGGACCGAGAACTT |
Primer 2 | NAU3995_R: AAGAGCCCTGGACAATGATA |
Restriction Enzyme | NotI; EcoRV |
Publication | [view all] |
Contact | Zhang, Tian-Zhen
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Comment | Primer data obtained in 2007-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Chr03 | chromosome | NAU3995:14..838 . Chr03:42318781..42319605 - |
Chr3 | chromosome | NAU3995:14..838 . Chr3:2570109..2570933 + |
Publications
Year | Publication |
2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | AD-genome wide Reference Map (2009) | AD_ch03_At.03 | N/A | 12 | nau3995 | View |
2 | Zhongmiansuo-12 x 8891, RIL (2007) | AD_chU | N/A | 0.3 | nau3995 | View |
3 | Yumian-1 x 7235, RIL (2015) | AD_ch17_Dt.03 | N/A | 82.8 | nau3995 | View |
4 | W10 x TM-1, F2:3 (2015) | AD_ch17_Dt.03 | N/A | 0 | nau3995 | View |
5 | GX1135 x VGX100-2, RIL (2016) | AD_ch17_Dt.03 | N/A | 0 | nau3995 | View |
6 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch17_Dt.03 | N/A | 30.9 | nau3995 | View |
7 | SG 747 x Giza 75, BIL (2013) | AD_ch05_At.05 | N/A | 49.4 | nau3995 | View |
8 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch17_Dt.03 | N/A | 55.1 | nau3995 | View |
9 | LMY22 x LY343, RIL (2016) | chr.17 | N/A | 0.6 | nau3995 | View |
10 | LMY22 x LY343, RIL (2020) | D03 | N/A | 71.65 | nau3995 | View |
11 | TM-1 x Hai-7124, BC1 (2008) | AD_ch03_At.03 | N/A | 104.82 | NAU3995-200 | View |
12 | TM-1 x Hai-7124, BC1 (2007) | AD_ch03_At.03 | N/A | 107 | NAU3995-200 | View |
13 | TM-1 x Hai-7124, BC1 (2012) | AD_ch03_At.03 | N/A | 102 | NAU3995-200 | View |
14 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch03_At.03 | N/A | 83.7 | NAU3995a | View |
15 | GX1135 x GX100-2, F2 (2013) | AD_ch03_At.03 | N/A | 59.6 | NAU3995a | View |
16 | GX1135 x GX100-2, RIL (2016) | AD_ch17_Dt.03 | N/A | 12.2 | NAU3995a | View |
17 | SG 747 x Giza 75, BIL (2013) | AD_ch03_At.03 | N/A | 99.6 | NAU3995a | View |
18 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch17_Dt.03 | N/A | 87.5 | NAU3995b | View |
19 | GX1135 x GX100-2, F2 (2013) | AD_ch17_Dt.03 | N/A | 20.5 | NAU3995b | View |
20 | GX1135 x GX100-2, RIL (2016) | AD_ch03_At.03 | N/A | 119.5 | NAU3995b | View |
21 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch17_Dt.03 | N/A | 91.2 | NAU3995c | View |
22 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch17_Dt.03 | N/A | 82 | NAU3995 | View |
23 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch17_Dt.03 | N/A | 87.47 | NAU3995 | View |
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