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Marker Overview
| Name | NAU3346 |
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| Genbank ID | CO102814 |
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| Type | SSR |
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| Species | Gossypium raimondii |
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| Source Type | EST |
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| Repeat Motif | (ccg)5 |
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| PCR Condition | Annealing temperature: 57 |
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| Primer 1 | NAU3346_F: CCGTTCCATGTTTTTGTGTA |
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| Primer 2 | NAU3346_R: ACCTGAACCTGAATGTCCAC |
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| Restriction Enzyme | NotI; EcoRV |
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| Publication | [view all] |
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| Contact | Zhang, Tian-Zhen
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| Comment | Primer data obtained in 2007-05 |
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Cross References
External references for this genetic_marker
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Chr02 | chromosome | NAU3346:6..649 .
Chr02:555714..556357 - |
| Chr8 | chromosome | NAU3346:6..649 .
Chr8:21957777..21958390 + |
Publications
| Year | Publication |
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| 2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | Emian-22 x 3-79, BC1 (2011) | AD_ch15_Dt.01 | N/A | 27.76 | NAU3346c | View |
| 2 | Emian-22 x 3-79, BC1 (2011) | AD_ch15_Dt.01 | N/A | 42.43 | NAU3346b | View |
| 3 | Emian-22 x 3-79, BC1 (2012) | AD_ch15_Dt.01 | N/A | 0 | NAU3346b | View |
| 4 | AD-genome wide Reference Map (2009) | AD_ch15_Dt.01 | N/A | 201 | nau3346 | View |
| 5 | Yumian-1 x T586, RIL (2015) | AD_ch15_Dt.01 | N/A | 2.4 | nau3346 | View |
| 6 | Yumian-1 x 7235, RIL (2015) | AD_ch24_Dt.08 | N/A | 25.5 | nau3346 | View |
| 7 | DH962 X Ji Mian 5, F2 (2015) | AD_ch01_At.01 | N/A | 122.68 | nau3346 | View |
| 8 | DH962 X Ji Mian 5, F2 (2015) | AD_ch15_Dt.01 | N/A | 122.68 | nau3346 | View |
| 9 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch01_At.01 | N/A | 157.9 | nau3346 | View |
| 10 | SG 747 x Giza 75, BIL (2013) | AD_ch15_Dt.01 | N/A | 0 | nau3346 | View |
| 11 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch01_At.01 | N/A | 0 | nau3346 | View |
| 12 | TM-1 x Hai-7124, BC1 (2007) | AD_ch15_Dt.01 | N/A | 10.9 | NAU3346-450 | View |
| 13 | TM-1 x Hai-7124, BC1 (2008) | AD_ch15_Dt.01 | N/A | 10.09 | NAU3346-450 | View |
| 14 | TM-1 x Hai-7124, BC1 (2012) | AD_ch15_Dt.01 | N/A | 116.6 | NAU3346-450 | View |
| 15 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch15_Dt.01 | N/A | 34.3 | NAU3346a | View |
| 16 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch15_Dt.01 | N/A | 6.64 | NAU3346 | View |
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