UCD_Gh_M_005827, UCD_Gh_M_005827 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_005827
AliasGh_M_005827
Tm1_Mira454_Contig_24364_1212
Gh_M_005827_Class_I
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00511Gh
TypeSNP
SNP AllelesC/T
5' Flanking SequenceCCTCTGACCCATGAGGAGGAAGTGCAAGAAGCTCCGCATGCTTCTTTTTCTTTTCTTCCT CTGTTTCAAAATCATCCATCCCCTCATTAGCATCAGAGCC
3' Flanking SequenceTTGTGGAAATCAACAAGCTCAGCATCCTCGTCCTCTTCTTCTTCTACTTCCACTTCCTCT TCTACCTCTTCCTCAACTTCCACTTCCTCCTCTTCCTCTA
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Stelly, David M.
Commentclass_I: no only SNPs derived from contigs with no known homeo-SNP positions in the contig within our data set
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch01_At.01N/A21.7SNPi00511GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch01_At.01N/A21.4i00511GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch01_At.01N/A19.8i00511GhView
Sequence
>UCD_Gh_M_005827 ID=UCD_Gh_M_005827; Name=UCD_Gh_M_005827; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
CCTCTGACCCATGAGGAGGAAGTGCAAGAAGCTCCGCATGCTTCTTTTTC
TTTTCTTCCTCTGTTTCAAAATCATCCATCCCCTCATTAGCATCAGAGCC
[C/T]TTGTGGAAATCAACAAGCTCAGCATCCTCGTCCTCTTCTTCTTCT
ACTTCCACTTCCTCTTCTACCTCTTCCTCAACTTCCACTTCCTCCTCTTC
CTCTA