HAU3218, HAU3218 (genetic_marker) gossypium spp

Marker Overview
NameHAU3218
Genbank IDGR716890
TypeSSR
SpeciesGossypium spp.
Source SequenceGR708102.1
Source TypeEST
Repeat Motif(AC)25
PCR ConditionAnnealing temperature: 56.5
Primer 1HAU3218_F: TCCAGCGAAGGGAGAGGAGA
Primer 2HAU3218_R: GGCCTTCGCCACCGTCAATA
Product Length152
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGR716890
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
HAU3218_FHAU3218_FGossypium spp.primer
HAU3218_RHAU3218_RGossypium spp.primer


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GR708102.1GR708102.1Gossypium spp.sequence_feature


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
HAU3218HAU3218Gossypium spp.marker_locus
HAU3218HAU3218-39.4Gossypium spp.marker_locus
HAU3218HAU3218-127.575Gossypium spp.marker_locus
HAU3218aHAU3218aGossypium spp.marker_locus
HAU3218bHAU3218bGossypium spp.marker_locus


Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:68047616..68047823 +
A03chromosomeA03:105688624..105688837 +
CM018216.1chromosomeCM018216.1:64398190..64398411 +
D5_03chromosomeD5_03:2548325..2548548 -
KI_03chromosomeKI_03:39758171..39758396 +
Chr8chromosomeChr8:39275836..39276055 -
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:132723200..132723419 +
Chr10chromosomeChr10:4322135..4322358 +
D10_03chromosomeD10_03:2484824..2485037 -
CM016616.1chromosomeCM016616.1:3494937..3495138 -
Dt_chr5chromosomeDt_chr5:9848535..9848742 +
scaffold1147.1supercontigscaffold1147.1:541924..542137 -
D02chromosomeD02:64670527..64670734 +
A03chromosomeA03:97427119..97427332 +
Ghir_D02chromosomeGhir_D02:67145022..67145229 +
Ghir_A03chromosomeGhir_A03:110075723..110075936 +
D02chromosomeD02:67181529..67181736 +
A03chromosomeA03:108753786..108753999 +
D02chromosomeD02:68470127..68470334 +
A03chromosomeA03:107182936..107183149 +
D02chromosomeD02:65584296..65584505 +
A03chromosomeA03:102458222..102458435 +
A03chromosomeA03:102434253..102434466 +
Gbar_D02chromosomeGbar_D02:64999773..64999996 +
Gbar_A03chromosomeGbar_A03:102374509..102374740 +
D02chromosomeD02:66216511..66216736 +
A03chromosomeA03:104705251..104705484 +
CM017624.1chromosomeCM017624.1:67304031..67304262 +
CM017612.1chromosomeCM017612.1:104080782..104080995 +
CM017650.1chromosomeCM017650.1:68925542..68925757 +
CM017638.1chromosomeCM017638.1:111196579..111196784 +
CM017702.1chromosomeCM017702.1:65814175..65814398 +
CM017690.1chromosomeCM017690.1:105188582..105188809 +
Sequence
>HAU3218 ID=HAU3218|Name=HAU3218|organism=Gossypium spp.|type=genetic_marker|length=152bp
TCCAGCGAAGGGAGAGGAGAGACACACACACACACACACACACACACACA
CACACACACACACACACACACAGAGATCTTCAAATTTCATCAATGGATCA
TTCAAAGGTTCAAGAGATCGTGGAGAAGCAGGTATTGACGGTGGCGAAGG
CC
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)YT-RIL.15_chr14N/AAD_chr.14135.3HAU3218View
2Yumian-1 x 7235, RIL (2015)Y7-RIL_chr14N/AAD_chr.1491.4HAU3218View
3CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr03N/AAt.0325.1HAU3218View
4CCRI-35 x Yumian-1, RIL (2015)CY-RIL_chr14N/AAD_chr.1414.5HAU3218View
5CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr03N/AAt.0339.4HAU3218View
6CCRI-35 x Yumian-1, RIL (2017)CY-RIL.17_chr14N/ADt.02127.58HAU3218View
7901-001 x sGK156, F2 (2019)Chr03N/AAD_chr.0341.5HAU3218aView
8901-001 x sGK156, F2 (2019)Chr03N/AAD_chr.0363.65HAU3218bView