HAU2850, HAU2850 (genetic_marker) gossypium spp

Marker Overview
NameHAU2850
Genbank IDES818194
TypeSSR
SpeciesGossypium spp.
Source SequenceES818194.1
Source TypeEST
Repeat Motif(AAC)6
PCR ConditionAnnealing temperature: 56.4
Primer 1HAU2850_F: TGGAGCCTCCTTCAATGGCG
Primer 2HAU2850_R: GCAGCAGCTGAACAACTCCC
Product Length220
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankES818194
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D13chromosomeD13:55569479..55569701 +
A13chromosomeA13:94524996..94525215 +
CM018227.1chromosomeCM018227.1:51358232..51358448 +
CM018214.1chromosomeCM018214.1:98421230..98421446 +
D5_13chromosomeD5_13:51294719..51294934 -
KI_13chromosomeKI_13:37125070..37125286 +
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:113251407..113251626 +
D10_13chromosomeD10_13:52439300..52439514 +
CM016626.1chromosomeCM016626.1:145364820..145365036 +
At_chr13chromosomeAt_chr13:20513902..20514121 +
At_chr8chromosomeAt_chr8:76826819..76827041 -
D13chromosomeD13:51431260..51431482 +
A13chromosomeA13:70850650..70850941 +
Ghir_D13chromosomeGhir_D13:54496700..54496922 +
Ghir_A13chromosomeGhir_A13:98274742..98274961 +
D13chromosomeD13:55535925..55536147 +
A13chromosomeA13:100768186..100768405 +
D13chromosomeD13:54662674..54662896 +
A13chromosomeA13:98831367..98831586 +
D13chromosomeD13:51337786..51338008 +
A13chromosomeA13:97210399..97210618 +
At13chromosomeAt13:76825819..76826035 +
scaffold7164supercontigscaffold7164:252929..253145 +
scaffold1393supercontigscaffold1393:427283..427499 +
Gbar_D13chromosomeGbar_D13:51071834..51072050 +
Gbar_A13chromosomeGbar_A13:99368809..99369025 +
D13chromosomeD13:52363489..52363705 +
A13chromosomeA13:102779905..102780121 +
CM017635.1chromosomeCM017635.1:52145461..52145677 +
CM017622.1chromosomeCM017622.1:100369550..100369766 +
CM017661.1chromosomeCM017661.1:55375832..55376048 +
CM017648.1chromosomeCM017648.1:105546049..105546268 -
CM017713.1chromosomeCM017713.1:52029041..52029257 +
CM017700.1chromosomeCM017700.1:100660976..100661192 +
D13chromosomeD13:55722650..55722872 +
A13chromosomeA13:101564896..101565115 +
Chr13chromosomeChr13:106675623..106675842 +
Chr13chromosomeChr13:111216957..111217176 +
Chr13chromosomeChr13:51271743..51271959 -
B_13chromosomeB_13:11722015..11722231 -
Chr13chromosomeChr13:51569069..51569285 -
chr13chromosomechr13:38576209..38576425 -
Chr_13chromosomeChr_13:36910947..36911163 -
Chr13chromosomeChr13:54320609..54320825 +
Chr13chromosomeChr13:35983992..35984208 -
Chr13chromosomeChr13:27990874..27991090 -
Chr13chromosomeChr13:35012705..35012930 -
E13chromosomeE13:103043413..103043629 +
F13chromosomeF13:86596911..86597127 +
Chr13chromosomeChr13:14082925..14083141 -
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
ES818194.1ES818194.1Gossypium spp.sequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch18_Dt.13N/A98.58HAU2850bView
2GX1135 x VGX100-2, RIL (2016)AD_ch13_At.13N/A32.3HAU2850View
Sequence
>HAU2850 ID=HAU2850; Name=HAU2850; organism=Gossypium spp.; type=genetic_marker; length=220bp
TGGAGCCTCCTTCAATGGCGGGTGATGAGAAGAGCTTAGATTTCGCAGAG
AGTGAGACTGGAGCTGGTTCAAGTAATCTTAAGCTAAACCAAACCTCCTC
TTCATATGCTTCAAGCACCGAGAATATATCTCGTCTCCTTCAAGGTTGGA
TGAGATCGTCACCCAAGATTAACAACAACAACAACAACAGCGACAGCATT
GGGAGTTGTTCAGCTGCTGC