HAU1868, HAU1868 (genetic_marker) gossypium spp

Marker Overview
NameHAU1868
Genbank IDDT567155
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TTC)5+(TCT)6
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU1868_F: TTGTTGCTGATTGCTATGGT
Primer 2HAU1868_R: TCTCTCGAAGAAGCCATTTC
Product Length288
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT567155
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01chromosomeA01:103657236..103657523 +
A01chromosomeA01:99685100..99685387 +
scaffold30521_objsupercontigscaffold30521_obj:419..706 +
A01chromosomeA01:112287709..112287996 +
A01chromosomeA01:119355294..119355581 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A0HAU1868View
Sequence
>HAU1868 ID=HAU1868; Name=HAU1868; organism=Gossypium spp.; type=genetic_marker; length=288bp
TTGTTGCTGATTGCTATGGTTTCGCAAGGGTGAGCCTTTTTTTTTTCTCT
TTTCTTTTTTATGGTTTTAGTCCCTTTGGTTTTATATGTATATATATACA
TATATATACATATAATCTTATTTCTCGAACTCATCCCTATATATTTTTCA
TTCGGTTATTTTTGTCACCATCTTCGCTATTCTTCTTCTTCTTCTTTCAT
TCGGTTGTTTTTTGTCACCATCTTCACTACTCTTCTTCTTCTTCTTCTGC
CGCTGTTTAACGTAAAAAGAAATGGCTTCTTCGAGAGA