HAU1785, HAU1785 (genetic_marker) gossypium spp

Marker Overview
NameHAU1785
Genbank IDDT467993
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TGC)5
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU1785_F: ATATGCATGCAATGTTCTGG
Primer 2HAU1785_R: CAATCCCAACATCTGAGTGA
Product Length231
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT467993
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:59624956..59625190 +
A04chromosomeA04:4830203..4830433 -
CM018219.1chromosomeCM018219.1:58605915..58606146 +
D5_05chromosomeD5_05:53805676..53805907 -
KI_05chromosomeKI_05:47067350..47067578 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:92312619..92312849 -
D10_05chromosomeD10_05:5883007..5883238 +
CM016618.1chromosomeCM016618.1:5740495..5740726 -
At_chr12chromosomeAt_chr12:42154478..42154708 +
Dt_chr9chromosomeDt_chr9:4006817..4007051 -
D05chromosomeD05:57313372..57313606 +
A04chromosomeA04:4443453..4443683 -
Ghir_D05chromosomeGhir_D05:58552238..58552472 +
Ghir_A04chromosomeGhir_A04:5469903..5470133 -
D05chromosomeD05:59326743..59326977 +
A04chromosomeA04:4662228..4662458 -
D05chromosomeD05:59231912..59232146 +
scaffold3447supercontigscaffold3447:434833..435063 +
scaffold15534supercontigscaffold15534:107390..107621 -
Gbar_D05chromosomeGbar_D05:59947765..59947996 +
Gbar_A04chromosomeGbar_A04:4977888..4978118 -
D05chromosomeD05:61442750..61442981 +
A04chromosomeA04:5021970..5022200 -
CM017627.1chromosomeCM017627.1:58270442..58270673 +
CM017613.1chromosomeCM017613.1:5209384..5209614 -
CM017653.1chromosomeCM017653.1:60786104..60786335 +
CM017639.1chromosomeCM017639.1:5561167..5561397 -
CM017705.1chromosomeCM017705.1:59523666..59523897 +
CM017691.1chromosomeCM017691.1:4983225..4983455 -
D05chromosomeD05:61636883..61637117 +
A04chromosomeA04:4980353..4980583 -
Chr05chromosomeChr05:88926456..88926686 +
Chr05chromosomeChr05:92475874..92476104 +
Chr05chromosomeChr05:53643963..53644194 +
B_05chromosomeB_05:7178793..7179024 +
Chr09chromosomeChr09:53745839..53746070 +
chr09chromosomechr09:52165685..52166357 -
Chr09_5127194chromosomeChr09_5127194:5952..6183 +
Chr09chromosomeChr09:57903227..57903458 +
Chr09chromosomeChr09:48453443..48453674 -
Chr09chromosomeChr09:40626276..40626507 -
Chr09chromosomeChr09:50523555..50523786 -
E05chromosomeE05:98333778..98334009 +
F05chromosomeF05:71735482..71735716 +
Chr05chromosomeChr05:15521963..15522194 -
Chr09chromosomeHAU1785:1..231 .
Chr09:67643788..67644019 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch19_Dt.05N/A20.67HAU1785View
2901-001 x sGK156, F2 (2019)AD_ch19_Dt.05N/A0HAU1785aView
3901-001 x sGK156, F2 (2019)AD_ch19_Dt.05N/A10.1HAU1785bView
Sequence
>HAU1785 ID=HAU1785; Name=HAU1785; organism=Gossypium spp.; type=genetic_marker; length=231bp
ATATGCATGCAATGTTCTGGGATCCACAGAAGTCTCGGGGTACACATATC
GAAGGTGCTTTTCTTATCTCTAGAATATATACTTTAATCTCTTCCTGTTT
GAGAAAGTTTATCGAGTTGCTGCTGCTGCTGCCACAACTGTTGTACTTCA
TTCACATATTTTCATGATAACTAATTCTAAACCTTTTTCCCATTATGGGT
ATGGATTTGGCTCACTCAGATGTTGGGATTG