NAU_TM00405, NAU_TM00405 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00405
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00405
TypeSNP
SNP AllelesA/T
5' Flanking SequenceTCTTCTTCCATAGGATCTTGATGAGTTCAAGACCATTCTTAAGCCACGCCTGAAATTAAT
3' Flanking SequenceGTCCAAAATGATGAGCGTGAATGGTTTATTGTATTTGTGTCTAGAGCCCATCCCAACAAT
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM018215.1chromosomeCM018215.1:7190835..7190955 +
CM018202.1chromosomeCM018202.1:8363938..8364058 +
D5_01chromosomeD5_01:6739005..6739125 +
KI_01chromosomeKI_01:5297460..5297580 +
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:9579771..9579891 +
D10_01chromosomeD10_01:53487349..53487469 -
CM016614.1chromosomeCM016614.1:10713506..10713626 +
scaffold6722.1supercontigscaffold6722.1:555..675 +
At_chr2chromosomeAt_chr2:5090862..5090982 +
scaffold3720_D01supercontigscaffold3720_D01:85346..85466 +
A01chromosomeA01:7974010..7974130 +
Ghir_D01chromosomeGhir_D01:7623709..7623829 +
Ghir_A01chromosomeGhir_A01:8376948..8377068 +
D01chromosomeD01:7436997..7437117 +
A01chromosomeA01:8037673..8037793 +
D01chromosomeD01:7087964..7088084 +
A01chromosomeA01:8532563..8532683 +
D01chromosomeD01:7498415..7498535 +
A01chromosomeA01:8345597..8345717 +
Gbar_D01chromosomeGbar_D01:7922004..7922124 +
Gbar_A01chromosomeGbar_A01:8401596..8401716 +
D01chromosomeD01:7642576..7642696 +
A01chromosomeA01:8059052..8059172 +
CM017623.1chromosomeCM017623.1:7369651..7369771 +
CM017610.1chromosomeCM017610.1:9386211..9386331 +
CM017649.1chromosomeCM017649.1:8195891..8196011 +
CM017636.1chromosomeCM017636.1:8553970..8554090 +
CM017701.1chromosomeCM017701.1:7556440..7556560 +
CM017688.1chromosomeCM017688.1:8559035..8559155 +
D01chromosomeD01:7755128..7755248 +
A01chromosomeA01:8541454..8541574 +
Chr01chromosomeChr01:8517645..8517765 +
Chr01chromosomeChr01:9389986..9390106 +
Chr01chromosomeChr01:6727966..6728086 +
B_01chromosomeB_01:8751773..8751893 +
Chr02chromosomeChr02:7289246..7289366 +
chr02chromosomechr02:7234979..7235099 +
Chr_02chromosomeChr_02:6735011..6735131 +
Chr02chromosomeChr02:7510841..7510961 +
Chr02chromosomeChr02:5752642..5752762 +
Chr02chromosomeChr02:7559567..7559687 +
E01chromosomeE01:10035943..10036063 +
F01chromosomeF01:7439245..7439365 +
Chr01chromosomeChr01:188663526..188663646 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1LMY28 x XLZ24, RIL (2018)AD_ch01_At.01N/A30.04TM405View
Sequence
>NAU_TM00405 ID=NAU_TM00405; Name=NAU_TM00405; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TCTTCTTCCATAGGATCTTGATGAGTTCAAGACCATTCTTAAGCCACGCC
TGAAATTAAT[A/T]GTCCAAAATGATGAGCGTGAATGGTTTATTGTATT
TGTGTCTAGAGCCCATCCCAACAAT