g.arboreum_cottongen_reftransV1_0008963, g.arboreum_cottongen_reftransV1_0008963 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0008963
Unique Name	g.arboreum_cottongen_reftransV1_0008963
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	466

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr3	chromosome	g.arboreum_cottongen_reftransV1_0008963:1..466 . Chr3:79604347..79604901 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008963 vs. ExPASy TrEMBL
Match: A0A0B0NP03_GOSAR (Reticulocyte-binding 2 a OS=Gossypium arboreum GN=F383_18922 PE=4 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.272e-71
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 2

Query:    2 PDAWPALVADLSTGEPGIIALAFGCTRLFQPNKPVTKAQAAVAIATGEASDLVSEELARIXXXXXXXXXXXXHNALVAEVEKDVNANFEKELSIEREKIDAFEKMXXXXXXXXXXXXXXXXXXNMVLMKDRAAISAETKILSRLRREVEEQLETM 466
            PDAWPALVADLSTGEPGIIALAFGCTRLFQPNKPVTKAQAAVAIATGEASDLVSEELARIEAESVAENAVSAHNALVAEVEKDVNANFEKELSIEREKIDAFEKMAEEAKRELERIRAEREEENMVLMKDRAAISAETKILSRLRREVEEQLETM
Sbjct:  594 PDAWPALVADLSTGEPGIIALAFGCTRLFQPNKPVTKAQAAVAIATGEASDLVSEELARIEAESVAENAVSAHNALVAEVEKDVNANFEKELSIEREKIDAFEKMAEEAKRELERIRAEREEENMVLMKDRAAISAETKILSRLRREVEEQLETM 748

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008963 vs. ExPASy TrEMBL
Match: A0A0D2MX27_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_004G118100 PE=4 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 1.342e-68
Identity = 148/155 (95.48%), Postives = 154/155 (99.35%), Query Frame = 2

Query:    2 PDAWPALVADLSTGEPGIIALAFGCTRLFQPNKPVTKAQAAVAIATGEASDLVSEELARIXXXXXXXXXXXXHNALVAEVEKDVNANFEKELSIEREKIDAFEKMXXXXXXXXXXXXXXXXXXNMVLMKDRAAISAETKILSRLRREVEEQLETM 466
            P+AWPALVADLSTGEPGIIALAFGCTRLFQP+KPVTKAQAAVAIATGEASDLVSEELARIEAESVAENAVSAHNALVAEVEKDVNANFEKELS+EREKIDA EKMAEEAKRELER+RAEREEENMVLMKDRAAISAET+ILSRLRREVEEQLE+M
Sbjct:  444 PNAWPALVADLSTGEPGIIALAFGCTRLFQPSKPVTKAQAAVAIATGEASDLVSEELARIEAESVAENAVSAHNALVAEVEKDVNANFEKELSMEREKIDALEKMAEEAKRELERLRAEREEENMVLMKDRAAISAETEILSRLRREVEEQLESM 598

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008963 vs. ExPASy TrEMBL
Match: A0A0D2PAJ1_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_004G118100 PE=4 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.224e-68
Identity = 148/155 (95.48%), Postives = 154/155 (99.35%), Query Frame = 2

Query:    2 PDAWPALVADLSTGEPGIIALAFGCTRLFQPNKPVTKAQAAVAIATGEASDLVSEELARIXXXXXXXXXXXXHNALVAEVEKDVNANFEKELSIEREKIDAFEKMXXXXXXXXXXXXXXXXXXNMVLMKDRAAISAETKILSRLRREVEEQLETM 466
            P+AWPALVADLSTGEPGIIALAFGCTRLFQP+KPVTKAQAAVAIATGEASDLVSEELARIEAESVAENAVSAHNALVAEVEKDVNANFEKELS+EREKIDA EKMAEEAKRELER+RAEREEENMVLMKDRAAISAET+ILSRLRREVEEQLE+M
Sbjct:  444 PNAWPALVADLSTGEPGIIALAFGCTRLFQPSKPVTKAQAAVAIATGEASDLVSEELARIEAESVAENAVSAHNALVAEVEKDVNANFEKELSMEREKIDALEKMAEEAKRELERLRAEREEENMVLMKDRAAISAETEILSRLRREVEEQLESM 598

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008963 vs. ExPASy TrEMBL
Match: A0A0D2NLZ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G048600 PE=4 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.257e-58
Identity = 127/155 (81.94%), Postives = 140/155 (90.32%), Query Frame = 2

Query:    2 PDAWPALVADLSTGEPGIIALAFGCTRLFQPNKPVTKAQAAVAIATGEASDLVSEELARIXXXXXXXXXXXXHNALVAEVEKDVNANFEKELSIEREKIDAFEKMXXXXXXXXXXXXXXXXXXNMVLMKDRAAISAETKILSRLRREVEEQLETM 466
            PDAWPA+VAD+S GE GIIALAFGCTRLFQPNKPVTKAQ AVA+ATGEA DLV+EELARIEAES+AE AVSAHNALVAEVEKDVNA+FEKEL IE+EKIDA EKMAEEA  ELER++AERE ENM LMKDRAAI +E + LSRLR EVEEQLE++
Sbjct:  207 PDAWPAVVADMSAGEQGIIALAFGCTRLFQPNKPVTKAQVAVALATGEAFDLVNEELARIEAESMAEKAVSAHNALVAEVEKDVNASFEKELLIEKEKIDAVEKMAEEALHELERLKAEREAENMALMKDRAAIDSEMEALSRLRCEVEEQLESL 361

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008963 vs. ExPASy TrEMBL
Match: A0A061G877_THECC (Chloroplast thylakoid membrane, putative isoform 4 OS=Theobroma cacao GN=TCM_015192 PE=4 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 4.921e-58
Identity = 129/155 (83.23%), Postives = 146/155 (94.19%), Query Frame = 2

Query:    2 PDAWPALVADLSTGEPGIIALAFGCTRLFQPNKPVTKAQAAVAIATGEASDLVSEELARIXXXXXXXXXXXXHNALVAEVEKDVNANFEKELSIEREKIDAFEKMXXXXXXXXXXXXXXXXXXNMVLMKDRAAISAETKILSRLRREVEEQLETM 466
            PDAWPAL+ADLS+GE GIIALAFGC RLFQP+KPVTKAQAAVA+ATGEASDLVSEE ARIEAES+AENAVSAH ALVA+VEKDVNA+FEKEL +EREKIDA EKMAEEAKRELER+R++REEEN+ LMKDRAAI +E ++LSRLRREVEEQLE++
Sbjct:  328 PDAWPALMADLSSGEQGIIALAFGCVRLFQPDKPVTKAQAAVALATGEASDLVSEEFARIEAESMAENAVSAHTALVAQVEKDVNASFEKELLMEREKIDAVEKMAEEAKRELERLRSQREEENIALMKDRAAIDSEMEVLSRLRREVEEQLESL 482

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008963 vs. ExPASy TrEMBL
Match: A0A0D2Q3G5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G048600 PE=4 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.382e-58
Identity = 127/155 (81.94%), Postives = 140/155 (90.32%), Query Frame = 2

Query:    2 PDAWPALVADLSTGEPGIIALAFGCTRLFQPNKPVTKAQAAVAIATGEASDLVSEELARIXXXXXXXXXXXXHNALVAEVEKDVNANFEKELSIEREKIDAFEKMXXXXXXXXXXXXXXXXXXNMVLMKDRAAISAETKILSRLRREVEEQLETM 466
            PDAWPA+VAD+S GE GIIALAFGCTRLFQPNKPVTKAQ AVA+ATGEA DLV+EELARIEAES+AE AVSAHNALVAEVEKDVNA+FEKEL IE+EKIDA EKMAEEA  ELER++AERE ENM LMKDRAAI +E + LSRLR EVEEQLE++
Sbjct:  207 PDAWPAVVADMSAGEQGIIALAFGCTRLFQPNKPVTKAQVAVALATGEAFDLVNEELARIEAESMAEKAVSAHNALVAEVEKDVNASFEKELLIEKEKIDAVEKMAEEALHELERLKAEREAENMALMKDRAAIDSEMEALSRLRCEVEEQLESL 361

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008963 vs. ExPASy TrEMBL
Match: A0A061G223_THECC (Chloroplast thylakoid membrane, putative isoform 2 OS=Theobroma cacao GN=TCM_015192 PE=4 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.612e-58
Identity = 129/155 (83.23%), Postives = 146/155 (94.19%), Query Frame = 2

Query:    2 PDAWPALVADLSTGEPGIIALAFGCTRLFQPNKPVTKAQAAVAIATGEASDLVSEELARIXXXXXXXXXXXXHNALVAEVEKDVNANFEKELSIEREKIDAFEKMXXXXXXXXXXXXXXXXXXNMVLMKDRAAISAETKILSRLRREVEEQLETM 466
            PDAWPAL+ADLS+GE GIIALAFGC RLFQP+KPVTKAQAAVA+ATGEASDLVSEE ARIEAES+AENAVSAH ALVA+VEKDVNA+FEKEL +EREKIDA EKMAEEAKRELER+R++REEEN+ LMKDRAAI +E ++LSRLRREVEEQLE++
Sbjct:  328 PDAWPALMADLSSGEQGIIALAFGCVRLFQPDKPVTKAQAAVALATGEASDLVSEEFARIEAESMAENAVSAHTALVAQVEKDVNASFEKELLMEREKIDAVEKMAEEAKRELERLRSQREEENIALMKDRAAIDSEMEVLSRLRREVEEQLESL 482

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008963 vs. ExPASy TrEMBL
Match: A0A0D2SS84_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G048600 PE=4 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.878e-58
Identity = 127/155 (81.94%), Postives = 140/155 (90.32%), Query Frame = 2

Query:    2 PDAWPALVADLSTGEPGIIALAFGCTRLFQPNKPVTKAQAAVAIATGEASDLVSEELARIXXXXXXXXXXXXHNALVAEVEKDVNANFEKELSIEREKIDAFEKMXXXXXXXXXXXXXXXXXXNMVLMKDRAAISAETKILSRLRREVEEQLETM 466
            PDAWPA+VAD+S GE GIIALAFGCTRLFQPNKPVTKAQ AVA+ATGEA DLV+EELARIEAES+AE AVSAHNALVAEVEKDVNA+FEKEL IE+EKIDA EKMAEEA  ELER++AERE ENM LMKDRAAI +E + LSRLR EVEEQLE++
Sbjct:  234 PDAWPAVVADMSAGEQGIIALAFGCTRLFQPNKPVTKAQVAVALATGEAFDLVNEELARIEAESMAEKAVSAHNALVAEVEKDVNASFEKELLIEKEKIDAVEKMAEEALHELERLKAEREAENMALMKDRAAIDSEMEALSRLRCEVEEQLESL 388

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008963 vs. ExPASy TrEMBL
Match: A0A0B0NFQ1_GOSAR (Pyridoxine 5'-phosphate synthase OS=Gossypium arboreum GN=F383_11410 PE=4 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.364e-57
Identity = 126/155 (81.29%), Postives = 140/155 (90.32%), Query Frame = 2

Query:    2 PDAWPALVADLSTGEPGIIALAFGCTRLFQPNKPVTKAQAAVAIATGEASDLVSEELARIXXXXXXXXXXXXHNALVAEVEKDVNANFEKELSIEREKIDAFEKMXXXXXXXXXXXXXXXXXXNMVLMKDRAAISAETKILSRLRREVEEQLETM 466
            PDAWPA+VAD+S GE GIIA AFGCTRLFQPNKPVTKAQ AVA+ATGEA DLV+EELARIEAES+AE AVSAHNALVAEVEKDVNA+FEKEL IE+EKIDA EKMAEE   ELER+RAERE +NM LMKDRAAI +E ++LSRLRREVEEQLE++
Sbjct:  590 PDAWPAVVADVSAGEQGIIAFAFGCTRLFQPNKPVTKAQVAVALATGEAFDLVNEELARIEAESMAEKAVSAHNALVAEVEKDVNASFEKELLIEKEKIDAVEKMAEETMHELERLRAEREAQNMALMKDRAAIDSEMEVLSRLRREVEEQLESL 744

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008963 vs. ExPASy TrEMBL
Match: A0A061G1H3_THECC (Chloroplast thylakoid membrane, putative isoform 3 OS=Theobroma cacao GN=TCM_015192 PE=4 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.441e-57
Identity = 129/155 (83.23%), Postives = 146/155 (94.19%), Query Frame = 2

Query:    2 PDAWPALVADLSTGEPGIIALAFGCTRLFQPNKPVTKAQAAVAIATGEASDLVSEELARIXXXXXXXXXXXXHNALVAEVEKDVNANFEKELSIEREKIDAFEKMXXXXXXXXXXXXXXXXXXNMVLMKDRAAISAETKILSRLRREVEEQLETM 466
            PDAWPAL+ADLS+GE GIIALAFGC RLFQP+KPVTKAQAAVA+ATGEASDLVSEE ARIEAES+AENAVSAH ALVA+VEKDVNA+FEKEL +EREKIDA EKMAEEAKRELER+R++REEEN+ LMKDRAAI +E ++LSRLRREVEEQLE++
Sbjct:  385 PDAWPALMADLSSGEQGIIALAFGCVRLFQPDKPVTKAQAAVALATGEASDLVSEEFARIEAESMAENAVSAHTALVAQVEKDVNASFEKELLMEREKIDAVEKMAEEAKRELERLRSQREEENIALMKDRAAIDSEMEVLSRLRREVEEQLESL 539

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0008963 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0008963 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0008963 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0NP03_GOSAR	1.272e-71	100.00	Reticulocyte-binding 2 a OS=Gossypium arboreum GN=...	[more]
A0A0D2MX27_GOSRA	1.342e-68	95.48	Uncharacterized protein (Fragment) OS=Gossypium ra...	[more]
A0A0D2PAJ1_GOSRA	4.224e-68	95.48	Uncharacterized protein (Fragment) OS=Gossypium ra...	[more]
A0A0D2NLZ9_GOSRA	1.257e-58	81.94	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061G877_THECC	4.921e-58	83.23	Chloroplast thylakoid membrane, putative isoform 4...	[more]
A0A0D2Q3G5_GOSRA	5.382e-58	81.94	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061G223_THECC	5.612e-58	83.23	Chloroplast thylakoid membrane, putative isoform 2...	[more]
A0A0D2SS84_GOSRA	6.878e-58	81.94	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0NFQ1_GOSAR	1.364e-57	81.29	Pyridoxine 5'-phosphate synthase OS=Gossypium arbo...	[more]
A0A061G1H3_THECC	1.441e-57	83.23	Chloroplast thylakoid membrane, putative isoform 3...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0008963 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 75..116
None	No IPR available	PANTHER	PTHR33740	FAMILY NOT NAMED	coord: 1..145
None	No IPR available	PANTHER	PTHR33740:SF3	SUBFAMILY NOT NAMED	coord: 1..145

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0008963 ID=g.arboreum_cottongen_reftransV1_0008963; Name=g.arboreum_cottongen_reftransV1_0008963; organism=Gossypium arboreum; type=contig; length=466bp
TCCAGATGCATGGCCTGCACTTGTAGCTGACTTGTCTACTGGAGAACCAG
GAATAATAGCTCTTGCTTTTGGTTGTACAAGATTGTTCCAGCCAAATAAG
CCTGTGACAAAGGCCCAAGCAGCTGTTGCTATTGCAACTGGTGAAGCTTC
TGACCTTGTAAGTGAGGAGCTAGCACGTATTGAAGCTGAATCAGTGGCAG
AAAATGCAGTATCTGCTCACAATGCTTTAGTAGCTGAAGTTGAGAAAGAT
GTTAATGCTAATTTTGAGAAAGAACTTTCGATAGAACGTGAAAAGATTGA
TGCTTTTGAAAAAATGGCTGAAGAGGCAAAGCGCGAGCTGGAAAGGATAA
GAGCTGAAAGAGAGGAAGAGAATATGGTCCTAATGAAGGACCGTGCTGCT
ATTAGTGCTGAAACGAAAATTCTTTCAAGATTAAGGCGTGAAGTGGAGGA
GCAGTTGGAAACCATG

Search form

g.arboreum_cottongen_reftransV1_0008963, g.arboreum_cottongen_reftransV1_0008963 (contig) Gossypium arboreum

Pages