g.arboreum_cottongen_reftransV1_0021259, g.arboreum_cottongen_reftransV1_0021259 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0021259
Unique Name	g.arboreum_cottongen_reftransV1_0021259
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	2207

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr3	chromosome	g.arboreum_cottongen_reftransV1_0021259:1..2207 . Chr3:19929559..19934476 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: A0A0B0NU41_GOSAR (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Gossypium arboreum GN=F383_17786 PE=4 SV=1)

HSP 1 Score: 700.279 bits (1806), Expect = 0.000e+0
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK 995
            AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK
Sbjct:  295 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK 625

HSP 2 Score: 198.749 bits (504), Expect = 1.143e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1

Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIKAQE 1752
            FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIKAQE
Sbjct:  642 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIKAQE 741

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: A0A0D2RVB0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G077800 PE=4 SV=1)

HSP 1 Score: 676.011 bits (1743), Expect = 0.000e+0
Identity = 325/354 (91.81%), Postives = 330/354 (93.22%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTKVSMFSTTIFNVQCYDHMTDSVNL 1064
            AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQI VANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIE H DDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGD SLLPIWY HPPFRVNHHAQRTMEFE ENEYESSSSKPLMLSITY PDGNYFIQHQQIGEN  HILEVKASNLGNDNFIVE+DGLTMNVSLAVYTK  +    I+N   + H    + L
Sbjct:  294 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIHVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIERHKDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDSSLLPIWYTHPPFRVNHHAQRTMEFECENEYESSSSKPLMLSITYRPDGNYFIQHQQIGENDAHILEVKASNLGNDNFIVEADGLTMNVSLAVYTKGQIKHIHIWNGPHHHHFRQKLGL 647

HSP 2 Score: 192.971 bits (489), Expect = 1.072e-48
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 1

Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIKAQE 1752
            FRQKLGLDLSDE+ETQHKTSFETTSHPPGTVVAPMAGLVVKVLVE+GAKVEAGQ VLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFR+KAQE
Sbjct:  641 FRQKLGLDLSDEDETQHKTSFETTSHPPGTVVAPMAGLVVKVLVENGAKVEAGQPVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRVKAQE 740

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: A0A0D2MV98_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G077800 PE=4 SV=1)

HSP 1 Score: 675.626 bits (1742), Expect = 0.000e+0
Identity = 325/354 (91.81%), Postives = 330/354 (93.22%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTKVSMFSTTIFNVQCYDHMTDSVNL 1064
            AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQI VANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIE H DDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGD SLLPIWY HPPFRVNHHAQRTMEFE ENEYESSSSKPLMLSITY PDGNYFIQHQQIGEN  HILEVKASNLGNDNFIVE+DGLTMNVSLAVYTK  +    I+N   + H    + L
Sbjct:  294 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIHVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIERHKDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDSSLLPIWYTHPPFRVNHHAQRTMEFECENEYESSSSKPLMLSITYRPDGNYFIQHQQIGENDAHILEVKASNLGNDNFIVEADGLTMNVSLAVYTKGQIKHIHIWNGPHHHHFRQKLGL 647

HSP 2 Score: 187.193 bits (474), Expect = 8.454e-47
Identity = 93/97 (95.88%), Postives = 96/97 (98.97%), Query Frame = 1

Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIK 1743
            FRQKLGLDLSDE+ETQHKTSFETTSHPPGTVVAPMAGLVVKVLVE+GAKVEAGQ VLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFR+K
Sbjct:  641 FRQKLGLDLSDEDETQHKTSFETTSHPPGTVVAPMAGLVVKVLVENGAKVEAGQPVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRVK 737

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: A0A0D2QTX2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G077800 PE=4 SV=1)

HSP 1 Score: 674.855 bits (1740), Expect = 0.000e+0
Identity = 325/354 (91.81%), Postives = 330/354 (93.22%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTKVSMFSTTIFNVQCYDHMTDSVNL 1064
            AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQI VANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIE H DDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGD SLLPIWY HPPFRVNHHAQRTMEFE ENEYESSSSKPLMLSITY PDGNYFIQHQQIGEN  HILEVKASNLGNDNFIVE+DGLTMNVSLAVYTK  +    I+N   + H    + L
Sbjct:  294 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIHVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIERHKDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDSSLLPIWYTHPPFRVNHHAQRTMEFECENEYESSSSKPLMLSITYRPDGNYFIQHQQIGENDAHILEVKASNLGNDNFIVEADGLTMNVSLAVYTKGQIKHIHIWNGPHHHHFRQKLGL 647

HSP 2 Score: 126.716 bits (317), Expect = 6.368e-27
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 1

Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKME 1647
            FRQKLGLDLSDE+ETQHKTSFETTSHPPGTVVAPMAGLVVKVLVE+GAKVEAGQ VLVLEAMKME
Sbjct:  641 FRQKLGLDLSDEDETQHKTSFETTSHPPGTVVAPMAGLVVKVLVENGAKVEAGQPVLVLEAMKME 705

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: A0A0D2R0U0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G077800 PE=4 SV=1)

HSP 1 Score: 674.855 bits (1740), Expect = 0.000e+0
Identity = 325/354 (91.81%), Postives = 330/354 (93.22%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTKVSMFSTTIFNVQCYDHMTDSVNL 1064
            AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQI VANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIE H DDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGD SLLPIWY HPPFRVNHHAQRTMEFE ENEYESSSSKPLMLSITY PDGNYFIQHQQIGEN  HILEVKASNLGNDNFIVE+DGLTMNVSLAVYTK  +    I+N   + H    + L
Sbjct:  294 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIHVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIERHKDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDSSLLPIWYTHPPFRVNHHAQRTMEFECENEYESSSSKPLMLSITYRPDGNYFIQHQQIGENDAHILEVKASNLGNDNFIVEADGLTMNVSLAVYTKGQIKHIHIWNGPHHHHFRQKLGL 647

HSP 2 Score: 186.808 bits (473), Expect = 9.283e-47
Identity = 93/97 (95.88%), Postives = 96/97 (98.97%), Query Frame = 1

Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIK 1743
            FRQKLGLDLSDE+ETQHKTSFETTSHPPGTVVAPMAGLVVKVLVE+GAKVEAGQ VLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFR+K
Sbjct:  641 FRQKLGLDLSDEDETQHKTSFETTSHPPGTVVAPMAGLVVKVLVENGAKVEAGQPVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRVK 737

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: A0A0D2P8L7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G077800 PE=4 SV=1)

HSP 1 Score: 595.504 bits (1534), Expect = 0.000e+0
Identity = 282/289 (97.58%), Postives = 282/289 (97.58%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQ 869
            AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQI VANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIE H DDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGD SLLPIWY HPPFRVNHHAQRTMEFE ENEYESSSSKPLMLSITY PDGNYFIQ
Sbjct:  294 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIHVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIERHKDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDSSLLPIWYTHPPFRVNHHAQRTMEFECENEYESSSSKPLMLSITYRPDGNYFIQ 582

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: A0A061DPH8_THECC (Methylcrotonyl-CoA carboxylase alpha chai isoform 2 OS=Theobroma cacao GN=TCM_004300 PE=4 SV=1)

HSP 1 Score: 595.504 bits (1534), Expect = 0.000e+0
Identity = 285/334 (85.33%), Postives = 302/334 (90.42%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTKVSM 1004
            AVSAAKAVGYHNAGTVEFIVDT TG FYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQ QVPLSGH+FEARIYAENVPKGFLPATGVL HYHPVP SSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENR+AALVKLKDCL KFQVAG+PTNINFLQKLANH+AFEEG+VETHFIEHH DDLFVDPNNK I E+AY AARL A LVAACLCE+E S +KESH G PSLL IWYAH PFRVNHHAQ TME EWEN Y+SSSSKPLML+ITY  DGNY IQH QIGEN  H LEV+AS+LGN++F VE+DG+TM+VSLAVY K  M
Sbjct:  147 AVSAAKAVGYHNAGTVEFIVDTITGQFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQVQVPLSGHSFEARIYAENVPKGFLPATGVLRHYHPVPVSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRSAALVKLKDCLSKFQVAGVPTNINFLQKLANHRAFEEGDVETHFIEHHKDDLFVDPNNKEISEEAYDAARLSANLVAACLCEEEHSTLKESHPGGPSLLSIWYAHSPFRVNHHAQSTMELEWENGYDSSSSKPLMLAITYQRDGNYLIQHIQIGENSAHSLEVRASHLGNNSFRVEADGVTMHVSLAVYIKDKM 480

HSP 2 Score: 179.104 bits (453), Expect = 1.151e-44
Identity = 89/97 (91.75%), Postives = 93/97 (95.88%), Query Frame = 1

Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIK 1743
            FRQKLGL+LSDE+ETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVE GQ VLVLEAMKMEHVVKATSGG V+GLKV AGQQVSDGSVLFR+K
Sbjct:  494 FRQKLGLELSDEDETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEEGQPVLVLEAMKMEHVVKATSGGYVQGLKVTAGQQVSDGSVLFRVK 590

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: A0A061DXH9_THECC (Methylcrotonyl-CoA carboxylase alpha chai isoform 1 OS=Theobroma cacao GN=TCM_004300 PE=4 SV=1)

HSP 1 Score: 587.415 bits (1513), Expect = 0.000e+0
Identity = 283/334 (84.73%), Postives = 300/334 (89.82%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTKVSM 1004
            AVSAAKAVGYHNAGTVEFIVDT TG FYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQ QVPLSGH+FEARIYAENVPKGFLPATGVL HYHPVP SSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENR+AALVKLKDCL KFQVAG+PTNINFLQKLANH+AFEEG+VETHFIEHH DDLFVDPNNK I E+AY AARL A LVAACLCE+E S +KESH G PSLL IWYAH PFRVNHHAQ TME EWEN Y+SSSSKPLML+ITY  DGNY I   QIGEN  H LEV+AS+LGN++F VE+DG+TM+VSLAVY K  M
Sbjct:  297 AVSAAKAVGYHNAGTVEFIVDTITGQFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQVQVPLSGHSFEARIYAENVPKGFLPATGVLRHYHPVPVSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRSAALVKLKDCLSKFQVAGVPTNINFLQKLANHRAFEEGDVETHFIEHHKDDLFVDPNNKEISEEAYDAARLSANLVAACLCEEEHSTLKESHPGGPSLLSIWYAHSPFRVNHHAQSTMELEWENGYDSSSSKPLMLAITYQRDGNYLI---QIGENSAHSLEVRASHLGNNSFRVEADGVTMHVSLAVYIKDKM 627

HSP 2 Score: 179.104 bits (453), Expect = 3.973e-44
Identity = 89/97 (91.75%), Postives = 93/97 (95.88%), Query Frame = 1

Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIK 1743
            FRQKLGL+LSDE+ETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVE GQ VLVLEAMKMEHVVKATSGG V+GLKV AGQQVSDGSVLFR+K
Sbjct:  641 FRQKLGLELSDEDETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEEGQPVLVLEAMKMEHVVKATSGGYVQGLKVTAGQQVSDGSVLFRVK 737

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: B9SFG9_RICCO (Acetyl-CoA carboxylase, putative OS=Ricinus communis GN=RCOM_0646250 PE=4 SV=1)

HSP 1 Score: 523.087 bits (1346), Expect = 1.458e-171
Identity = 253/333 (75.98%), Postives = 284/333 (85.29%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLM--LSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK 995
            AVSAAKAVGY+NAGTVEFIVD  +G FYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLP++Q QVPL GHAFE RIYAENV KGFLPATGVLHHY P+  SSTVRVETGVE+GD VSMHYDPMIAKLVVWGENRAAALVKLKDCL KFQVAG+PTNINFLQKLA+H +FE+GNVETHFIEHH  DLF DPNN ++ ++AYS A+  A L+AACLCEK+ SA+KES  G  SL PIWY+HPPFRV+H A+ TMEFEW+NEY+SS SKPL   LSITY PDGNY I+  +IG  G   L VKA +L + NF VE+DG++MNVSLA Y+K
Sbjct:  298 AVSAAKAVGYYNAGTVEFIVDIVSGKFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPLTQSQVPLLGHAFETRIYAENVSKGFLPATGVLHHYRPIAVSSTVRVETGVEEGDTVSMHYDPMIAKLVVWGENRAAALVKLKDCLSKFQVAGVPTNINFLQKLASHTSFEDGNVETHFIEHHKQDLFTDPNNSMLAKEAYSNAKYSASLLAACLCEKQHSALKESPPGHSSLHPIWYSHPPFRVHHLARHTMEFEWDNEYDSSGSKPLTVALSITYLPDGNYLIELGEIGSCG---LVVKAMHLDDCNFRVEADGVSMNVSLAAYSK 627

HSP 2 Score: 151.754 bits (382), Expect = 6.513e-35
Identity = 74/97 (76.29%), Postives = 83/97 (85.57%), Query Frame = 1

Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIK 1743
            FRQKLGLDLSD+++TQH T  ET SHPPGTVVAPMAGLVVKVLV+DG+KVE GQ +LVLEAMKMEHVVKA   G V GL+V AGQQ+SD S+LF IK
Sbjct:  644 FRQKLGLDLSDDDKTQHMTDVETASHPPGTVVAPMAGLVVKVLVQDGSKVEEGQPILVLEAMKMEHVVKAPFTGYVRGLQVTAGQQISDNSLLFSIK 740

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: D7TE06_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0151g00460 PE=4 SV=1)

HSP 1 Score: 521.546 bits (1342), Expect = 5.194e-171
Identity = 252/331 (76.13%), Postives = 280/331 (84.59%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK 995
            AVSAAKAVGYHNAGTVEFIVDT +G FYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLP++Q QVPL GHAFEARIYAENV KGFLPATG+LHHY PVP SSTVRVETGVEQGD VSMHYDPMIAKLVVWGENRAAALVK+KDCL KFQVAGLPTNINFLQKLANH AFE G VETHFIEH  DDLFVDP+N ++  +AY AA+  A L+AAC+CEKER  +KES  G  S L IWYA+PPFRV+H A+RTME +W+NEY+SSSSK L  SIT+ PDGNY I   + GE      EVK ++LGN +F VE DG++ +VSLAVY+K
Sbjct:  291 AVSAAKAVGYHNAGTVEFIVDTISGQFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPMNQSQVPLLGHAFEARIYAENVSKGFLPATGILHHYRPVPVSSTVRVETGVEQGDTVSMHYDPMIAKLVVWGENRAAALVKMKDCLSKFQVAGLPTNINFLQKLANHWAFENGKVETHFIEHFKDDLFVDPSNLLLANEAYDAAKFSAVLIAACVCEKERCNLKESPPGGKSSLSIWYAYPPFRVHHSARRTMELDWDNEYDSSSSKLLTFSITFQPDGNYLI---ETGEENSPDWEVKVAHLGNSDFRVEVDGVSRDVSLAVYSK 618

HSP 2 Score: 149.058 bits (375), Expect = 5.195e-34
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 1

Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIK 1743
            FRQ++GL LS ++E QHK SFE TSHPPGTVVAPMAGLVVKVLV+DG  VE GQ +LVLEAMKMEHVVKA SGG V GL+V AGQQVSDGS LF ++
Sbjct:  635 FRQRVGLQLSADDEAQHKPSFEATSHPPGTVVAPMAGLVVKVLVKDGTNVEEGQPILVLEAMKMEHVVKAPSGGHVHGLQVTAGQQVSDGSFLFSVQ 731

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: MCCA_SOYBN (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Glycine max GN=MCCA PE=1 SV=2)

HSP 1 Score: 473.781 bits (1218), Expect = 1.561e-154
Identity = 232/345 (67.25%), Postives = 274/345 (79.42%), Query Frame = 3

Query:   30 YHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTKVSMFSTTIFNVQCYDHMTDSVNL 1064
            Y+NAGTVEFIVDT +  FYFMEMNTRLQVEHPVTEMIVGQDLVEWQI VANGE LP+SQ QVPLSGHAFEARIYAENV KGFLPATGVLHHYH VP SS VRVETGV++GD VSMHYDPMIAKLVVWGENRAAALVKLKD L KFQVAGLPTN+NFLQKLANH+AF  GNVETHFI+++ +DLFVD NN V  ++AY AARL A LVAACL EKE   +  +  G  SLLPIWY+ PPFR++H A+R ME EW+NEY S SSK + L+ITY PDG Y I+ +Q   NG  +LEVK++ + ++ F VE+ G+  +V++AVY+K  +    I+   C+ +  + + L
Sbjct:  299 YYNAGTVEFIVDTVSDEFYFMEMNTRLQVEHPVTEMIVGQDLVEWQILVANGEALPLSQSQVPLSGHAFEARIYAENVQKGFLPATGVLHHYH-VPVSSAVRVETGVKEGDKVSMHYDPMIAKLVVWGENRAAALVKLKDSLSKFQVAGLPTNVNFLQKLANHRAFAIGNVETHFIDNYKEDLFVDANNSVSVKEAYEAARLNASLVAACLIEKEHFILARNPPGGSSLLPIWYSSPPFRIHHQAKRRMELEWDNEYGSGSSKIMKLTITYQPDGRYLIETEQ---NGSPVLEVKSTYVKDNYFRVEAAGVINDVNVAVYSKDQIRHIHIWQGSCHHYFREKLGL 639

HSP 2 Score: 136.346 bits (342), Expect = 6.844e-32
Identity = 68/99 (68.69%), Postives = 82/99 (82.83%), Query Frame = 1

Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIKAQ 1749
            FR+KLGL+LS++ E+QHK   ET+++P GTVVAPMAGLVVKVLVE+  +VE GQ VLVLEAMKMEHVVKA S G V GL++  G+QVSDGSVLF +K Q
Sbjct:  633 FREKLGLELSEDEESQHKPKVETSANPQGTVVAPMAGLVVKVLVENKTRVEEGQPVLVLEAMKMEHVVKAPSSGYVHGLQLMVGEQVSDGSVLFSVKDQ 731

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: MCCA_ARATH (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Arabidopsis thaliana GN=MCCA PE=1 SV=2)

HSP 1 Score: 453.751 bits (1166), Expect = 9.596e-147
Identity = 225/332 (67.77%), Postives = 257/332 (77.41%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGD-PSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK 995
            AVSAA+AVGY+NAGTVEFIVDT++  FYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLP+SQ +VP+SGHAFEARIYAENVPKGFLPATGVL+HY PV  S +VRVETGVEQGD VSMHYDPMIAKLVVWG NR  ALVKLKDCL  FQVAG+PTNINFLQKLA+HK F  GNVETHFIEHH  DLF D +N    E AY A +  A LVAAC+   E S   ES+ G  PS   IWY++PPFRV+H A++T+E EW NE E + S  + L + Y PDG+Y I+      N    LE++ +  G  +F VE+ GL+MNVSLA Y K
Sbjct:  295 AVSAARAVGYYNAGTVEFIVDTESDQFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPLSQSEVPMSGHAFEARIYAENVPKGFLPATGVLNHYRPVAVSPSVRVETGVEQGDTVSMHYDPMIAKLVVWGGNRGEALVKLKDCLSNFQVAGVPTNINFLQKLASHKEFAVGNVETHFIEHHKSDLFADESNPAATEVAYKAVKHSAALVAACISTIEHSTWNESNHGKVPS---IWYSNPPFRVHHEAKQTIELEWNNECEGTGSNLISLGVRYQPDGSYLIEEG----NDSPSLELRVTRAGKCDFRVEAAGLSMNVSLAAYLK 619

HSP 2 Score: 142.124 bits (357), Expect = 1.027e-33
Identity = 71/98 (72.45%), Postives = 83/98 (84.69%), Query Frame = 1

Query: 1453 FRQKLGLDLS-DENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIK 1743
            F+QK+G++ S DE   QH+TS ET+SHPPGT+VAPMAGLVVKVLVE+ AKV+ GQ +LVLEAMKMEHVVKA S G ++ LKV AGQQVSDGS LFRIK
Sbjct:  636 FKQKVGIEFSEDEEGVQHRTSSETSSHPPGTIVAPMAGLVVKVLVENEAKVDQGQPILVLEAMKMEHVVKAPSSGSIQDLKVKAGQQVSDGSALFRIK 733

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: MCCA_ORYSJ (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=MCCA PE=2 SV=2)

HSP 1 Score: 424.091 bits (1089), Expect = 2.778e-135
Identity = 208/331 (62.84%), Postives = 253/331 (76.44%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK 995
            AVSAAKAVGY++AGTVEFIVDT +G FYFMEMNTRLQVEHPVTEMIVGQDLVEWQIR+ANGE LP+SQ+QVPL+GHAFEARIYAENVP+GFLPATG LHHY PVP ++TVRVETGVE+GD VSMHYDPMIAKLVVWGE+R AALVKLK+ L  FQ+AGLPTN+ FLQ+LA H AFE+G V+THFIE + +DL       +    ++ A  LGA L AAC+C+K+  + + S       L +WYAHPPFR++H A+R MEFE + E   SS   L LS+TY  DG YF++ +     G   L+VK  + G+ +F V+  GL  +V+LA Y+K
Sbjct:  296 AVSAAKAVGYYSAGTVEFIVDTLSGEFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRIANGECLPLSQEQVPLNGHAFEARIYAENVPRGFLPATGTLHHYRPVPSTATVRVETGVEEGDTVSMHYDPMIAKLVVWGESRNAALVKLKNSLSNFQIAGLPTNVGFLQELAGHSAFEKGLVDTHFIERYQNDLLSTSTQAL--SGSHEAEELGAILAAACICKKDHVSSEVSLHDKK--LSMWYAHPPFRMHHFAKRLMEFELDRELGGSSDDLLKLSVTYRSDGTYFVETEDGSSPG---LDVKVDSRGDHDFRVDVGGLQTDVTLAFYSK 619

HSP 2 Score: 119.013 bits (297), Expect = 2.361e-26
Identity = 60/97 (61.86%), Postives = 73/97 (75.26%), Query Frame = 1

Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIK 1743
            +RQ L  + S ++ +Q   S E  SHP G+V+APMAGLVVKVL++DGA+VE GQ V+V+EAMKMEHVVKA   G VEGLK  AGQQV D SVLF +K
Sbjct:  636 YRQTLRAEQSPDDSSQPSASSEARSHPKGSVLAPMAGLVVKVLLKDGARVEEGQPVMVMEAMKMEHVVKAPCAGYVEGLKATAGQQVFDSSVLFTVK 732

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: MCCA_RAT (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Rattus norvegicus GN=Mccc1 PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 3.907e-75
Identity = 141/289 (48.79%), Postives = 186/289 (64.36%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQ 869
            AV AAKAV Y  AGTVEFI+D+K  +FYFMEMNTRLQVEHPVTEMI G DLVEWQ+R+A GE +P+SQ+++PL GHAFEARIYAE+    F+P  G L H    PP  + R+ETGV QGD VS+HYDPMIAKLVVW  +R +AL KL+  L ++ + GL TN++FL +L+ H  FE GNV T FI  H+ DL   P +  I +++   A LG       L EKE ++  + H+ D    P  ++    R+N    R M          S    +++++TY+ DG+Y +Q
Sbjct:  302 AVRAAKAVNYVGAGTVEFIMDSKH-NFYFMEMNTRLQVEHPVTEMITGTDLVEWQLRIAAGEKIPLSQEEIPLQGHAFEARIYAEDPDNNFMPGAGPLVHLSTPPPDMSTRIETGVRQGDEVSVHYDPMIAKLVVWASDRQSALSKLRYSLHQYNIVGLRTNVDFLLRLSGHSEFEAGNVHTDFIPQHHKDLL--PTHSTIAKESVCQAALG-----LILKEKEMTSAFKLHTQD-QFSPFSFSSGR-RLNISYTRNMTLR-------SGKNDIIIAVTYNRDGSYDMQ 573

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: MCCA_MOUSE (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Mus musculus GN=Mccc1 PE=1 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 1.094e-69
Identity = 131/280 (46.79%), Postives = 179/280 (63.93%), Query Frame = 3

Query:   30 YHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQ 869
            Y  AGTVEFI+D++  +FYFMEMNTRLQVEHPVTEMI G DLVEWQ+R+A GE +P+SQ+++PL GHAFEARIYAE+    F+P  G L H        + R+ETGV QGD VS+HYDPMIAKLVVW  +R +AL KL+ CL ++ + GL +N++FL +L+ H  FE GNV T FI  H+ DL   P++  I +++   A LG       L EKE ++  + H+ D    P  ++    R+N    R M          S    +++++TY+ DG+Y +Q
Sbjct:  311 YVGAGTVEFIMDSRH-NFYFMEMNTRLQVEHPVTEMITGTDLVEWQLRIAAGEKIPLSQEEIPLQGHAFEARIYAEDPDNNFMPGAGPLVHLSTPSADMSTRIETGVRQGDEVSVHYDPMIAKLVVWASDRQSALSKLRYCLHQYNIVGLRSNVDFLLRLSGHPEFEAGNVHTDFIPQHHKDLL--PSHSTIAKESVCQAALG-----LILKEKEMTSAFKLHTQD-QFSPFSFSSGR-RLNISYTRNMTLR-------SGKSDIVIAVTYNRDGSYDMQ 573

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: MCCA_HUMAN (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Homo sapiens GN=MCCC1 PE=1 SV=3)

HSP 1 Score: 238.81 bits (608), Expect = 2.580e-66
Identity = 136/295 (46.10%), Postives = 173/295 (58.64%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPF------RVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQ 869
            AV AAKAV Y  AGTVEFI+D+K  +F FMEMNTRLQVEHPVTEMI G DLVEWQ+R+A GE +P+SQ+++ L GHAFEARIYAE+    F+P  G L H        + R+ETGV QGD VS+HYDPMIAKLVVW  +R AAL KL+  L ++ + GL TNI+FL  L+ H  FE GNV T FI  H+  L +  + K   +++   A LG  L             KE    D   L       PF      R+N    R M  +            + +++TY+ DG+Y +Q
Sbjct:  306 AVRAAKAVNYVGAGTVEFIMDSKH-NFCFMEMNTRLQVEHPVTEMITGTDLVEWQLRIAAGEKIPLSQEEITLQGHAFEARIYAEDPSNNFMPVAGPLVHLSTPRADPSTRIETGVRQGDEVSVHYDPMIAKLVVWAADRQAALTKLRYSLRQYNIVGLHTNIDFLLNLSGHPEFEAGNVHTDFIPQHHKQLLL--SRKAAAKESLCQAALGLIL-------------KEKAMTDTFTLQAHDQFSPFSSSSGRRLNISYTRNMTLK-------DGKNNVAIAVTYNHDGSYSMQ 577

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: MCCA_DICDI (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=mccA PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.115e-60
Identity = 118/256 (46.09%), Postives = 159/256 (62.11%), Query Frame = 3

Query:   27 GYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWEN 794
            GY  AGTVEFI+ +    F+FMEMNTRLQVEHP+TEMI  QDLVEWQ++VA  + LP+ Q+Q+ + GH+FEARIYAEN    FLP TG L H     PS T+RVETGV QGD VS++YDPMIAKLVVW ++R  AL  L++ L ++ + GL TNI+FL++L+ H +F  G VET FI  H + L            A  A      L  A      +   ++    DP+    W +   FR+NH+ ++ ++F  ++
Sbjct:  295 GYVGAGTVEFIL-SADNSFFFMEMNTRLQVEHPITEMITKQDLVEWQLKVAESQTLPMEQEQLKIHGHSFEARIYAENPDSDFLPGTGKLAHLSTPTPSDTLRVETGVRQGDEVSVYYDPMIAKLVVWDQDREKALRYLRNALDEYHIIGLNTNISFLKRLSTHPSFMAGEVETGFIPIHRESLM-----------APQAPMSDDSLALAATSLLLKEITQQKSKEDPN--SPWSSLGGFRINHNLKKQVKFNQKD 536

HSP 2 Score: 56.9954 bits (136), Expect = 5.244e-7
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 1

Query: 1537 GTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVL 1731
            G++V+PM G + KV+V  G  V+ GQ +L++EAMKMEH +++   G VE L     + V D   L
Sbjct:  631 GSLVSPMPGKITKVMVNVGDMVKKGQPILLMEAMKMEHTIRSPIDGKVESLPYNVNEIVEDKKTL 695

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: ACCC2_BACSU (Biotin carboxylase 2 OS=Bacillus subtilis (strain 168) GN=accC2 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.195e-50
Identity = 97/188 (51.60%), Postives = 126/188 (67.02%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHH 566
            AV AAKA+GY NAGT+EFIVD K  +FYF+EMNTRLQVEHPVTE I G DLVE Q+R+A G  L  SQ  +  +GHA E RIYAE+ PK F P+ G +  +  +P    VR E  V +   V+  YDPMIAK++V G+ R  A+ KL+  L  ++V G+ TN+  L + A  KAF+EG+V T F++ H
Sbjct:  259 AVKAAKAIGYTNAGTIEFIVDQKQ-NFYFLEMNTRLQVEHPVTEEITGLDLVEQQLRIAAGHTLTFSQKDIQRNGHAIEVRIYAED-PKTFFPSPGTITAF-SLPDQKGVRHECAVAKDSTVTPFYDPMIAKMIVKGQTRTEAIEKLETALRDYRVEGIKTNLPLLIQAAATKAFKEGDVTTDFLKQH 443

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: PCCA_CAEEL (Propionyl-CoA carboxylase alpha chain, mitochondrial OS=Caenorhabditis elegans GN=pcca-1 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.355e-48
Identity = 90/186 (48.39%), Postives = 130/186 (69.89%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGF-LPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFI 557
            AV  AKAVGY +AGTVEF+VD++  +FYF+EMNTRLQVEHP+TE I G D+V+  +RV+ G PLPI+Q+QVPL+G AFE+R+YAE+  KGF LP+ G L  Y        VR ++G+ +G  +S++YDP+I KLV  G+NR  AL ++++ L  + + G+  NI  L+ +   K F  G++ T ++
Sbjct:  306 AVQLAKAVGYDSAGTVEFLVDSQR-NFYFLEMNTRLQVEHPITECITGIDIVQQMLRVSYGHPLPITQEQVPLNGWAFESRVYAEDPYKGFGLPSVGRLSRYVEPKHVDGVRCDSGIREGSEISIYYDPLICKLVTHGDNREQALNRMQEALDNYVIRGVTHNIPLLRDIVQEKRFRTGDITTKYL 490

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BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: ACCC_NOSS1 (Biotin carboxylase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=accC PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.161e-47
Identity = 90/189 (47.62%), Postives = 124/189 (65.61%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHN 569
            AV AA+ + Y  AGT+EF++D ++G FYFMEMNTR+QVEHPVTEM+ G DL+  QIR+A GE L ++QDQV L GHA E RI AE+    F PA G +  Y P P    VR+++ V     +  +YD +I KL+VWG +RA A+ ++K  L +  + GLPT I F Q++  +  F +GNV T F++  N
Sbjct:  260 AVKAAQFINYTGAGTIEFLLD-RSGQFYFMEMNTRIQVEHPVTEMVTGVDLLVEQIRIAQGERLRLTQDQVVLRGHAIECRINAEDPDHDFRPAPGRISGYLP-PGGPGVRIDSHVYTDYQIPPYYDSLIGKLIVWGPDRATAINRMKRALRECAITGLPTTIGFHQRIMENPQFLQGNVSTSFVQEMN 446

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0NU41_GOSAR	1.143e-50	100.00	Methylcrotonoyl-CoA carboxylase subunit alpha, mit...	[more]
A0A0D2RVB0_GOSRA	1.072e-48	91.81	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2MV98_GOSRA	8.454e-47	91.81	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2QTX2_GOSRA	6.368e-27	91.81	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2R0U0_GOSRA	9.283e-47	91.81	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2P8L7_GOSRA	0.000e+0	97.58	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061DPH8_THECC	1.151e-44	85.33	Methylcrotonyl-CoA carboxylase alpha chai isoform ...	[more]
A0A061DXH9_THECC	3.973e-44	84.73	Methylcrotonyl-CoA carboxylase alpha chai isoform ...	[more]
B9SFG9_RICCO	1.458e-171	75.98	Acetyl-CoA carboxylase, putative OS=Ricinus commun...	[more]
D7TE06_VITVI	5.194e-171	76.13	Putative uncharacterized protein OS=Vitis vinifera...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
MCCA_SOYBN	1.561e-154	67.25	Methylcrotonoyl-CoA carboxylase subunit alpha, mit...	[more]
MCCA_ARATH	9.596e-147	67.77	Methylcrotonoyl-CoA carboxylase subunit alpha, mit...	[more]
MCCA_ORYSJ	2.778e-135	62.84	Methylcrotonoyl-CoA carboxylase subunit alpha, mit...	[more]
MCCA_RAT	3.907e-75	48.79	Methylcrotonoyl-CoA carboxylase subunit alpha, mit...	[more]
MCCA_MOUSE	1.094e-69	46.79	Methylcrotonoyl-CoA carboxylase subunit alpha, mit...	[more]
MCCA_HUMAN	2.580e-66	46.10	Methylcrotonoyl-CoA carboxylase subunit alpha, mit...	[more]
MCCA_DICDI	2.115e-60	46.09	Methylcrotonoyl-CoA carboxylase subunit alpha, mit...	[more]
ACCC2_BACSU	1.195e-50	51.60	Biotin carboxylase 2 OS=Bacillus subtilis (strain ...	[more]
PCCA_CAEEL	2.355e-48	48.39	Propionyl-CoA carboxylase alpha chain, mitochondri...	[more]
ACCC_NOSS1	1.161e-47	47.62	Biotin carboxylase OS=Nostoc sp. (strain PCC 7120 ...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005482	Biotin carboxylase, C-terminal	SMART	SM00878	Biotin_carb_C_2	coord: 50..157 e-value: 7.1E-52 score: 188.3
IPR005482	Biotin carboxylase, C-terminal	PFAM	PF02785	Biotin_carb_C	coord: 50..157 e-value: 1.3E-35 score: 121.6
IPR013816	ATP-grasp fold, subdomain 2	GENE3D	3.30.470.20		coord: 1..162 e-value: 1.3E-60 score: 204.1
IPR005479	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	PFAM	PF02786	CPSase_L_D2	coord: 1..36 e-value: 2.8E-11 score: 43.2
None	No IPR available	PANTHER	PTHR18866	CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE	coord: 1..298
None	No IPR available	SUPERFAMILY	56059	Glutathione synthetase ATP-binding domain-like	coord: 1..60
IPR011764	Biotin carboxylation domain	PROSITE	PS50979	BC	coord: 1..161 score: 27.551
IPR011054	Rudiment single hybrid motif	SUPERFAMILY	51246	Rudiment single hybrid motif	coord: 45..163

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0021259 ID=g.arboreum_cottongen_reftransV1_0021259; Name=g.arboreum_cottongen_reftransV1_0021259; organism=Gossypium arboreum; type=contig; length=2207bp
CTGCCGTATCTGCTGCTAAGGCAGTTGGTTATCACAATGCTGGCACTGTG
GAGTTTATAGTTGATACCAAAACAGGTCATTTTTACTTCATGGAGATGAA
CACTCGACTTCAGGTTGAGCATCCTGTGACTGAGATGATTGTTGGTCAAG
ATCTCGTGGAGTGGCAAATTCGTGTTGCAAATGGGGAGCCTCTTCCTATA
AGTCAGGATCAGGTGCCCTTATCAGGTCATGCTTTTGAAGCCCGAATCTA
TGCTGAAAATGTTCCCAAAGGATTTCTTCCTGCAACTGGAGTTCTTCATC
ATTATCATCCAGTACCACCCTCTTCAACAGTTCGGGTTGAGACTGGAGTT
GAACAAGGAGATGTTGTTAGCATGCATTATGATCCTATGATTGCAAAGCT
TGTAGTATGGGGAGAAAACCGTGCTGCAGCACTAGTCAAATTGAAGGATT
GCTTGTTAAAGTTTCAGGTTGCAGGGTTGCCAACTAATATCAATTTCCTA
CAAAAGCTTGCTAACCATAAGGCATTTGAAGAGGGCAATGTTGAAACGCA
TTTTATTGAGCACCATAACGATGACCTATTTGTTGATCCTAATAATAAAG
TAATTTATGAGGATGCATATAGTGCAGCTAGACTTGGAGCAAAGCTGGTA
GCTGCTTGCCTTTGTGAAAAGGAACGTTCTGCTATGAAAGAAAGCCATTC
TGGGGATCCTAGCTTACTTCCTATATGGTATGCTCATCCTCCATTCAGAG
TCAATCATCATGCACAGAGGACCATGGAATTTGAGTGGGAAAATGAATAT
GAGAGCAGTAGTTCAAAGCCTTTGATGCTTTCTATCACTTATCATCCTGA
TGGGAACTATTTTATTCAGCATCAACAGATTGGAGAAAATGGTGTCCACA
TATTGGAAGTCAAAGCATCAAATCTGGGCAATGATAATTTTATAGTTGAG
TCTGATGGTTTAACCATGAATGTTAGTTTAGCTGTTTATACCAAGGTGAG
TATGTTTTCTACCACAATCTTTAATGTACAATGTTATGACCATATGACGG
ATTCAGTTAACTTAGGAAAATAACTTCTAAAATTTATCTGGGTGTCATCT
GTAATTATTGGCTATGTTGACTTTTTATTTCTCTTAACGTGTGCCAATGT
TAGACACTTATCCTCTGCCTGAAAGTCAAGTGGCCCACAGTGCATAAAGG
TAAGCCCATTGAAATGTAAGGTAAATGTACCATTTTCCGGCAGACTGTGT
CTGACCTATGTACCCAAATCCAAGCTACACAGCTTGTTAGGTATGACTGG
CATGCTTAGGTATTATCTAATGTAACTAGAGTGAGTGCAGAAAATTACGA
GTTCATTCTTTCTCTGTGATAAAATCATGTGAAATCTTATAATGTGGGTT
ACAGGGTCAGATCAAACACATACATATATGGCATGGGCCGCACCACCATC
ATTTCAGACAGAAACTAGGCCTTGACCTGTCTGATGAAAATGAAACACAG
CATAAGACGAGTTTCGAGACCACAAGCCACCCTCCTGGGACTGTAGTGGC
ACCCATGGCTGGTTTAGTGGTCAAGGTTCTGGTAGAGGATGGGGCGAAGG
TGGAAGCAGGACAAGCTGTATTGGTCCTTGAAGCCATGAAGATGGAGCAT
GTGGTAAAAGCAACATCTGGTGGTGTTGTTGAAGGGCTTAAAGTCGGTGC
TGGTCAGCAGGTTTCAGATGGTAGTGTTCTCTTCAGAATCAAGGCCCAGG
AATGAATGGAAAAATTCATCTTGAATTTTGGCTTTTCGGGACAATATCGT
GCCTAAGCAAATAAATCTCCTCAGCTACTAATGGCAGGGAAAATAAGTCA
TTGTAAGTATCTGCGACTCCTTACAAACATAAAAAAAGAAAAGAAAAGAA
GAAAGCAAATAGAGAAAAGAGAATGTTAGGGAAACATCCCATATCCTCAT
TATACATGCAGAAACCTCTTGCAAGATGTGAAACAACATTTGATCTGGAA
AAATAAATGTATACTCATATCTGCAGAAGTTGCCTCTGCAAATTGGCATT
TTCGCCTTTATATGCTTTTACAATGAATTTTTTCTGCCATTTGGGAATGG
AAATCTTTAGTGCATCACTGTAGGTTTTCCTGTTAATTTGATATTGGGAT
GGATTAATGCTTTAAAAAGAAATAGCTTATGCACATATTTTCATTCTTTT
GTCTAAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR005482	Biotin_COase_C
IPR013816	ATP_grasp_subdomain_2
IPR005479	CbamoylP_synth_lsu-like_ATP-bd
IPR011764	Biotin_carboxylation_dom
IPR011054	Rudment_hybrid_motif

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0004075	biotin carboxylase activity

Search form

g.arboreum_cottongen_reftransV1_0021259, g.arboreum_cottongen_reftransV1_0021259 (contig) Gossypium arboreum

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