g.arboreum_cottongen_reftransV1_0003490, g.arboreum_cottongen_reftransV1_0003490 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0003490
Unique Nameg.arboreum_cottongen_reftransV1_0003490
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length308
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0003490:1..308 .
Chr1:48783946..48784337 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A0D2N4W8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G028200 PE=4 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.184e-51
Identity = 98/103 (95.15%), Postives = 98/103 (95.15%), Query Frame = -2
Query:    2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXX-XXXXXSYLLKGC 307
            YDAIGLMKQLSEHTA TYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKSSTAVS  S  SSYLLKGC
Sbjct:  693 YDAIGLMKQLSEHTAATYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKSSTAVSFSSPTSSYLLKGC 795          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A0D2LU27_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G028200 PE=4 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.663e-50
Identity = 98/103 (95.15%), Postives = 98/103 (95.15%), Query Frame = -2
Query:    2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXX-XXXXXSYLLKGC 307
            YDAIGLMKQLSEHTA TYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKSSTAVS  S  SSYLLKGC
Sbjct:  908 YDAIGLMKQLSEHTAATYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKSSTAVSFSSPTSSYLLKGC 1010          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A061GRG0_THECC (Myb domain protein 3r-4, putative OS=Theobroma cacao GN=TCM_047091 PE=4 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.224e-42
Identity = 84/104 (80.77%), Postives = 91/104 (87.50%), Query Frame = -2
Query:    2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKM--DKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307
            YDAIGLMKQLSEHTA  YADALEVLGNETPESIVKGRRSNN  +  DKENNQ+E++SHLAS+IL ERR LDFSECGTPGKGTEN KSST++S  S  SYLLKGC
Sbjct:  939 YDAIGLMKQLSEHTAAAYADALEVLGNETPESIVKGRRSNNPNVNEDKENNQLESRSHLASNILAERRTLDFSECGTPGKGTENGKSSTSMSSFSSPSYLLKGC 1042          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A0B0NXX8_GOSAR (Myb-related 3R-1-like protein OS=Gossypium arboreum GN=F383_21854 PE=4 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.243e-37
Identity = 70/85 (82.35%), Postives = 76/85 (89.41%), Query Frame = -2
Query:   56 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSK-MDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRK 307
            YDAIGLMKQLSEH A  YADALEVLGNETP+SI+KGR SNNS  +DKENNQ+E  SHLAS+I+VERRILDFSECGTPGKGTEN K
Sbjct:  960 YDAIGLMKQLSEHGAAAYADALEVLGNETPQSIIKGRGSNNSNNIDKENNQLENHSHLASNIMVERRILDFSECGTPGKGTENGK 1044          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A0D2RUD4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G051000 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.552e-37
Identity = 68/85 (80.00%), Postives = 77/85 (90.59%), Query Frame = -2
Query:   56 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNN-SKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRK 307
            YDAIGLMKQLSEH+A  YADALEVLGNETP+SI+KGR SNN + +DKENNQ+E  SHLAS+I+VERR+LDFSECGTPGKGTEN K
Sbjct:  923 YDAIGLMKQLSEHSAAAYADALEVLGNETPQSIIKGRGSNNPNNIDKENNQLENHSHLASNIMVERRVLDFSECGTPGKGTENGK 1007          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A0D2SQU6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G110000 PE=4 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.353e-36
Identity = 79/105 (75.24%), Postives = 84/105 (80.00%), Query Frame = -2
Query:    2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXX---XXSYLLKGC 307
            YDAIGL+KQLSEHTA  YADALEVLGNETP+SIVKGR SNN  MDKENN +E  SHL S+IL ERRILDFSEC TP K TEN KSST  +  S   PSSYLLKGC
Sbjct:  874 YDAIGLIKQLSEHTAAAYADALEVLGNETPKSIVKGRLSNNRNMDKENNGVENSSHLTSNILAERRILDFSECETPRKETENGKSSTTAATVSFSGPSSYLLKGC 978          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A0D2UA19_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G110000 PE=4 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.439e-36
Identity = 79/105 (75.24%), Postives = 84/105 (80.00%), Query Frame = -2
Query:    2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXX---XXSYLLKGC 307
            YDAIGL+KQLSEHTA  YADALEVLGNETP+SIVKGR SNN  MDKENN +E  SHL S+IL ERRILDFSEC TP K TEN KSST  +  S   PSSYLLKGC
Sbjct:  875 YDAIGLIKQLSEHTAAAYADALEVLGNETPKSIVKGRLSNNRNMDKENNGVENSSHLTSNILAERRILDFSECETPRKETENGKSSTTAATVSFSGPSSYLLKGC 979          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: B9RS48_RICCO (Myb, putative OS=Ricinus communis GN=RCOM_0802980 PE=4 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.432e-31
Identity = 75/107 (70.09%), Postives = 86/107 (80.37%), Query Frame = -2
Query:    2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENN-----QMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307
            YDAI LMKQLSEHTA+ +ADALEVLGNETPE+I++ RRS+   M++ENN     + E  SHLAS+I  E R LDFSECGTPGKGTE  KSSTA+ FSSPSSYLLKGC
Sbjct:  939 YDAIALMKQLSEHTASAFADALEVLGNETPETILEKRRSSIQNMNQENNGATNSEPENHSHLASNISTECRTLDFSECGTPGKGTERGKSSTAIIFSSPSSYLLKGC 1045          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: M5XM69_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000676mg PE=4 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.080e-30
Identity = 71/107 (66.36%), Postives = 83/107 (77.57%), Query Frame = -2
Query:    2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKEN-----NQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307
            YDAIGLMKQ+SE TA  YA+A EVLGNETPE++ + RR N + +D EN     NQ  + S  A+++LVERR LDFSECGTPGKGTEN KSS A +FSSPSSYLLKGC
Sbjct:  931 YDAIGLMKQISEQTAAAYANAQEVLGNETPETLFRERRKNQALVDPENNHGPPNQPGSSSLSAANVLVERRTLDFSECGTPGKGTENAKSSNAKTFSSPSSYLLKGC 1037          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: B9IKM4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s00710g PE=4 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 3.373e-29
Identity = 71/102 (69.61%), Postives = 83/102 (81.37%), Query Frame = -2
Query:    2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307
            YDAI LMKQLSEHTA+ YADALEVLG +TPES++K RR +N     +N   E +SHLAS++L E R LDFSECGTPGK TEN KSS+A+SFSSPS+YLLKGC
Sbjct:  929 YDAIALMKQLSEHTASAYADALEVLGKDTPESMLKERRHSN----DQNGDQENRSHLASNVLTECRTLDFSECGTPGKLTENGKSSSAISFSSPSAYLLKGC 1026          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2N4W8_GOSRA4.184e-5195.15Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2LU27_GOSRA2.663e-5095.15Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061GRG0_THECC4.224e-4280.77Myb domain protein 3r-4, putative OS=Theobroma cac... [more]
A0A0B0NXX8_GOSAR1.243e-3782.35Myb-related 3R-1-like protein OS=Gossypium arboreu... [more]
A0A0D2RUD4_GOSRA2.552e-3780.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2SQU6_GOSRA7.353e-3675.24Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2UA19_GOSRA7.439e-3675.24Uncharacterized protein OS=Gossypium raimondii GN=... [more]
B9RS48_RICCO1.432e-3170.09Myb, putative OS=Ricinus communis GN=RCOM_0802980 ... [more]
M5XM69_PRUPE4.080e-3066.36Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
B9IKM4_POPTR3.373e-2969.61Uncharacterized protein OS=Populus trichocarpa GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0003490 ID=g.arboreum_cottongen_reftransV1_0003490; Name=g.arboreum_cottongen_reftransV1_0003490; organism=Gossypium arboreum; type=contig; length=308bp
TGCAACCTTTCAAGAGATATGAAGAGGGGCTTGAGAAACTCACGGCAGTT
GAGGACTTTCTATTTTCGGTACCCTTTCCAGGCGTTCCACATTCACTAAA
GTCAAGGATGCGACGCTCCACCAAGATATCTGAAGCCAAATGTGATTGAG
TCTCCATTTGATTATTCTCTTTGTCCATTTTGGAATTGTTGGAGCGTCTT
CCCTTCACAATTGATTCTGGAGTTTCATTTCCCAAAACTTCCAAAGCATC
AGCATAAGTAGTTGCAGTATGCTCACTTAATTGTTTCATCAACCCGATGG
CATCGTAG
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