g.arboreum_cottongen_reftransV1_0013937, g.arboreum_cottongen_reftransV1_0013937 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0013937
Unique Nameg.arboreum_cottongen_reftransV1_0013937
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length316
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr7chromosomeg.arboreum_cottongen_reftransV1_0013937:1..316 .
Chr7:10485372..10485687 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: A0A0D2SNN4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G207100 PE=4 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.694e-35
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 3
Query:   24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            MATAKVSKASKWFSNKSLRLSL RRGSKSRSTSLSSSPGPSSTPISPRT+PNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE
Sbjct:    1 MATAKVSKASKWFSNKSLRLSLHRRGSKSRSTSLSSSPGPSSTPISPRTVPNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 97          
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: A0A0D2PQ89_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G070200 PE=4 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.739e-23
Identity = 69/98 (70.41%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEE-DEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            MAT KVSKASKWFSNK+LRLSL RR SKS S+S  +SP  S +          R KRP + DEMKQVF YFDGD DGKISALELRAYFGSIGEYMSHE
Sbjct:    1 MATTKVSKASKWFSNKTLRLSLHRRRSKSSSSSTLTSPASSPSSPRE------RPKRPHQVDEMKQVFRYFDGDDDGKISALELRAYFGSIGEYMSHE 92          
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: A0A061DG10_THECC (Calmodulin-like 41, putative OS=Theobroma cacao GN=TCM_000467 PE=4 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.511e-21
Identity = 69/97 (71.13%), Postives = 71/97 (73.20%), Query Frame = 3
Query:   24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            MATAKVSKASKWFSNKSLRLSL RR SKS STS S  P P+S                E DEMK+VF YFD DGDGKISALELRAYFGSIGEYMSHE
Sbjct:    1 MATAKVSKASKWFSNKSLRLSLHRRRSKSSSTSSSFGPSPTSH---------------EGDEMKEVFRYFDSDGDGKISALELRAYFGSIGEYMSHE 82          
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: B9T4V6_RICCO (Calmodulin, putative OS=Ricinus communis GN=RCOM_0411630 PE=4 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.931e-21
Identity = 56/98 (57.14%), Postives = 68/98 (69.39%), Query Frame = 3
Query:   24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXX-XXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            MAT K  K+SKWFSNK+L+LS +R  S+S ++   +    S        T P + T   +EDE+KQVF YFD DGDGKISALELRAYFGS+GEYMSHE
Sbjct:    1 MATEKPPKSSKWFSNKNLQLSFKRLRSESSTSRRLNCVPNSRVTSPASLTTPEIVTTARQEDELKQVFSYFDTDGDGKISALELRAYFGSVGEYMSHE 98          
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: M5WBE4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016099mg PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.667e-17
Identity = 52/95 (54.74%), Postives = 59/95 (62.11%), Query Frame = 3
Query:   30 TAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            T  +SK SKWFSNKSL+LS   R S   S     SP  +          +       EDE+++VF YFDGDGDGKISA ELRAYFGSIGEYMSHE
Sbjct:    7 TRAISKPSKWFSNKSLKLSFPGRRSSKSSPKSPLSPTSAPVGPISPRWTS------REDELREVFRYFDGDGDGKISASELRAYFGSIGEYMSHE 95          
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: B9MXT3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s12930g PE=4 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.155e-16
Identity = 58/97 (59.79%), Postives = 66/97 (68.04%), Query Frame = 3
Query:   24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            MAT +VSK+SKWFSNK LRLSL RR SKS ST  S +   S            +  R  EDE+K+VF +FD DGDG+ISALELRAYF SIGE MSHE
Sbjct:    1 MATDRVSKSSKWFSNKGLRLSLHRRRSKSSSTLSSPNSLMSPYTP--------KKGRAREDELKEVFRHFDSDGDGRISALELRAYFRSIGESMSHE 89          
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: B9HEM5_POPTR (Calmodulin-like gene family protein OS=Populus trichocarpa GN=POPTR_0007s12250g PE=4 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.670e-16
Identity = 57/97 (58.76%), Postives = 66/97 (68.04%), Query Frame = 3
Query:   24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            M T + SK+SKWFSNK LRLSL RR SKS STS S +   S            +    +EDE+++VF  FD DGDG+ISALELRAYFGSIGEYMSHE
Sbjct:    1 METERASKSSKWFSNKGLRLSLHRRRSKSSSTSSSPNSPMSPCTP--------KKDSTKEDELREVFRCFDSDGDGRISALELRAYFGSIGEYMSHE 89          
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: A5ATQ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041123 PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.199e-16
Identity = 54/97 (55.67%), Postives = 60/97 (61.86%), Query Frame = 3
Query:   24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            M    V K ++WFSN+SLRLSL RR  KS S S S      S                +EDE+KQVF +FD DGDGKISALELRAYFGSI EYMSHE
Sbjct:    1 MGAEIVLKPARWFSNRSLRLSLHRRSPKSSSASSSPPSPSCSLQPKGD---------AKEDELKQVFRHFDSDGDGKISALELRAYFGSIQEYMSHE 88          
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: B9T4V5_RICCO (Calmodulin, putative OS=Ricinus communis GN=RCOM_0411620 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.325e-16
Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = 3
Query:   24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            MA  ++ K SKWFSNK LRLSL R  SKS S+S  S   PS           ++     EDE+K+VF +FD DGD K+SALELR++FGS+GE+MSHE
Sbjct:    1 MAKERILKPSKWFSNKGLRLSLNRGRSKSSSSSTLSCSPPSPMSPCTPKNNTLKV----EDELKEVFRHFDTDGDEKVSALELRSFFGSVGEFMSHE 93          
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: V7CCX5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G251000g PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.635e-14
Identity = 50/97 (51.55%), Postives = 67/97 (69.07%), Query Frame = 3
Query:   24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            MAT ++ K SKWFSNK+L+LSL R  S+S ++S  SS     +P+S  T      K+ E + + + F + DGDGDGKISA +LR+YFGSIGE+MSHE
Sbjct:    1 MATDRIFKPSKWFSNKTLKLSLHRPTSRSSNSSSHSSNASPRSPMSTCTT----PKKKEVNGLTEAFHHLDGDGDGKISAYDLRSYFGSIGEHMSHE 93          
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy Swiss-Prot
Match: CML41_ARATH (Probable calcium-binding protein CML41 OS=Arabidopsis thaliana GN=CML41 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.298e-16
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:   24 MATAKVSKAS---KWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            MAT K   +S   KWFS K+L+L+L  +  +    S SSS   S    S     N+++ +  ++E++QVF +FD DGDGKISA ELR YFGS+GEY+SHE
Sbjct:    1 MATQKEKPSSNSFKWFSTKTLKLNLSFQNRRRSPKSNSSSTLNSPRSNSDDNN-NIKSHQASKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHE 99          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2SNN4_GOSRA2.694e-3597.94Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2PQ89_GOSRA2.739e-2370.41Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061DG10_THECC1.511e-2171.13Calmodulin-like 41, putative OS=Theobroma cacao GN... [more]
B9T4V6_RICCO2.931e-2157.14Calmodulin, putative OS=Ricinus communis GN=RCOM_0... [more]
M5WBE4_PRUPE3.667e-1754.74Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
B9MXT3_POPTR1.155e-1659.79Uncharacterized protein OS=Populus trichocarpa GN=... [more]
B9HEM5_POPTR1.670e-1658.76Calmodulin-like gene family protein OS=Populus tri... [more]
A5ATQ9_VITVI6.199e-1655.67Putative uncharacterized protein OS=Vitis vinifera... [more]
B9T4V5_RICCO9.325e-1652.58Calmodulin, putative OS=Ricinus communis GN=RCOM_0... [more]
V7CCX5_PHAVU2.635e-1451.55Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CML41_ARATH2.298e-1647.00Probable calcium-binding protein CML41 OS=Arabidop... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011992EF-hand domain pairGENE3D1.10.238.10coord: 56..97
e-value: 2.4E-9
score: 36.1
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 55..97
IPR002048EF-hand domainPFAMPF13405EF-hand_6coord: 62..88
e-value: 2.0E-6
score: 27.2
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 58..93
score: 12.951
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 59..97
NoneNo IPR availablePANTHERPTHR10891:SF568CALCIUM-BINDING PROTEIN CML41-RELATEDcoord: 59..97
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 71..83

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0013937 ID=g.arboreum_cottongen_reftransV1_0013937; Name=g.arboreum_cottongen_reftransV1_0013937; organism=Gossypium arboreum; type=contig; length=316bp
AGGGTTTCCACGGTCAATATATTATGGCAACTGCTAAAGTTTCCAAGGCT
TCCAAATGGTTCTCTAACAAGAGCCTTAGGTTAAGCCTTCAACGTCGTGG
ATCAAAGTCTAGATCAACATCCTTAAGCTCTTCTCCTGGACCATCATCAA
CACCAATATCTCCTCGCACAATTCCTAATATGAGAACCAAAAGGCCTGAA
GAAGACGAGATGAAGCAAGTCTTTGGCTATTTCGACGGGGATGGTGATGG
CAAAATCTCTGCTCTTGAACTTAGGGCGTACTTTGGGTCCATCGGGGAGT
ACATGTCACATGAAGA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding