g.arboreum_cottongen_reftransV1_0013937, g.arboreum_cottongen_reftransV1_0013937 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: A0A0D2SNN4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G207100 PE=4 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 2.694e-35 Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 3 Query: 24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 MATAKVSKASKWFSNKSLRLSL RRGSKSRSTSLSSSPGPSSTPISPRT+PNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE Sbjct: 1 MATAKVSKASKWFSNKSLRLSLHRRGSKSRSTSLSSSPGPSSTPISPRTVPNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 97
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: A0A0D2PQ89_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G070200 PE=4 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.739e-23 Identity = 69/98 (70.41%), Postives = 74/98 (75.51%), Query Frame = 3 Query: 24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEE-DEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 MAT KVSKASKWFSNK+LRLSL RR SKS S+S +SP S + R KRP + DEMKQVF YFDGD DGKISALELRAYFGSIGEYMSHE Sbjct: 1 MATTKVSKASKWFSNKTLRLSLHRRRSKSSSSSTLTSPASSPSSPRE------RPKRPHQVDEMKQVFRYFDGDDDGKISALELRAYFGSIGEYMSHE 92
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: A0A061DG10_THECC (Calmodulin-like 41, putative OS=Theobroma cacao GN=TCM_000467 PE=4 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.511e-21 Identity = 69/97 (71.13%), Postives = 71/97 (73.20%), Query Frame = 3 Query: 24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 MATAKVSKASKWFSNKSLRLSL RR SKS STS S P P+S E DEMK+VF YFD DGDGKISALELRAYFGSIGEYMSHE Sbjct: 1 MATAKVSKASKWFSNKSLRLSLHRRRSKSSSTSSSFGPSPTSH---------------EGDEMKEVFRYFDSDGDGKISALELRAYFGSIGEYMSHE 82
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: B9T4V6_RICCO (Calmodulin, putative OS=Ricinus communis GN=RCOM_0411630 PE=4 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 2.931e-21 Identity = 56/98 (57.14%), Postives = 68/98 (69.39%), Query Frame = 3 Query: 24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXX-XXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 MAT K K+SKWFSNK+L+LS +R S+S ++ + S T P + T +EDE+KQVF YFD DGDGKISALELRAYFGS+GEYMSHE Sbjct: 1 MATEKPPKSSKWFSNKNLQLSFKRLRSESSTSRRLNCVPNSRVTSPASLTTPEIVTTARQEDELKQVFSYFDTDGDGKISALELRAYFGSVGEYMSHE 98
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: M5WBE4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016099mg PE=4 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.667e-17 Identity = 52/95 (54.74%), Postives = 59/95 (62.11%), Query Frame = 3 Query: 30 TAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 T +SK SKWFSNKSL+LS R S S SP + + EDE+++VF YFDGDGDGKISA ELRAYFGSIGEYMSHE Sbjct: 7 TRAISKPSKWFSNKSLKLSFPGRRSSKSSPKSPLSPTSAPVGPISPRWTS------REDELREVFRYFDGDGDGKISASELRAYFGSIGEYMSHE 95
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: B9MXT3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s12930g PE=4 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.155e-16 Identity = 58/97 (59.79%), Postives = 66/97 (68.04%), Query Frame = 3 Query: 24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 MAT +VSK+SKWFSNK LRLSL RR SKS ST S + S + R EDE+K+VF +FD DGDG+ISALELRAYF SIGE MSHE Sbjct: 1 MATDRVSKSSKWFSNKGLRLSLHRRRSKSSSTLSSPNSLMSPYTP--------KKGRAREDELKEVFRHFDSDGDGRISALELRAYFRSIGESMSHE 89
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: B9HEM5_POPTR (Calmodulin-like gene family protein OS=Populus trichocarpa GN=POPTR_0007s12250g PE=4 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.670e-16 Identity = 57/97 (58.76%), Postives = 66/97 (68.04%), Query Frame = 3 Query: 24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 M T + SK+SKWFSNK LRLSL RR SKS STS S + S + +EDE+++VF FD DGDG+ISALELRAYFGSIGEYMSHE Sbjct: 1 METERASKSSKWFSNKGLRLSLHRRRSKSSSTSSSPNSPMSPCTP--------KKDSTKEDELREVFRCFDSDGDGRISALELRAYFGSIGEYMSHE 89
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: A5ATQ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041123 PE=4 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.199e-16 Identity = 54/97 (55.67%), Postives = 60/97 (61.86%), Query Frame = 3 Query: 24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 M V K ++WFSN+SLRLSL RR KS S S S S +EDE+KQVF +FD DGDGKISALELRAYFGSI EYMSHE Sbjct: 1 MGAEIVLKPARWFSNRSLRLSLHRRSPKSSSASSSPPSPSCSLQPKGD---------AKEDELKQVFRHFDSDGDGKISALELRAYFGSIQEYMSHE 88
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: B9T4V5_RICCO (Calmodulin, putative OS=Ricinus communis GN=RCOM_0411620 PE=4 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 9.325e-16 Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = 3 Query: 24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 MA ++ K SKWFSNK LRLSL R SKS S+S S PS ++ EDE+K+VF +FD DGD K+SALELR++FGS+GE+MSHE Sbjct: 1 MAKERILKPSKWFSNKGLRLSLNRGRSKSSSSSTLSCSPPSPMSPCTPKNNTLKV----EDELKEVFRHFDTDGDEKVSALELRSFFGSVGEFMSHE 93
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: V7CCX5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G251000g PE=4 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 2.635e-14 Identity = 50/97 (51.55%), Postives = 67/97 (69.07%), Query Frame = 3 Query: 24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 MAT ++ K SKWFSNK+L+LSL R S+S ++S SS +P+S T K+ E + + + F + DGDGDGKISA +LR+YFGSIGE+MSHE Sbjct: 1 MATDRIFKPSKWFSNKTLKLSLHRPTSRSSNSSSHSSNASPRSPMSTCTT----PKKKEVNGLTEAFHHLDGDGDGKISAYDLRSYFGSIGEHMSHE 93
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy Swiss-Prot
Match: CML41_ARATH (Probable calcium-binding protein CML41 OS=Arabidopsis thaliana GN=CML41 PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 2.298e-16 Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 3 Query: 24 MATAKVSKAS---KWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 MAT K +S KWFS K+L+L+L + + S SSS S S N+++ + ++E++QVF +FD DGDGKISA ELR YFGS+GEY+SHE Sbjct: 1 MATQKEKPSSNSFKWFSTKTLKLNLSFQNRRRSPKSNSSSTLNSPRSNSDDNN-NIKSHQASKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHE 99 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0013937 ID=g.arboreum_cottongen_reftransV1_0013937; Name=g.arboreum_cottongen_reftransV1_0013937; organism=Gossypium arboreum; type=contig; length=316bpback to top |