g.arboreum_cottongen_reftransV1_0020780, g.arboreum_cottongen_reftransV1_0020780 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0020780
Unique Nameg.arboreum_cottongen_reftransV1_0020780
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length557
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr2chromosomeg.arboreum_cottongen_reftransV1_0020780:1..557 .
Chr2:48337727..48338283 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A0B0NYY8_GOSAR (Floral homeotic APETALA 2-like protein OS=Gossypium arboreum GN=F383_06269 PE=4 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 5.813e-86
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 3 
Query:   87 MWDLNDSPDRSRDEESEGCSSPVDGEEGKGKRXXXXXXXXXXXXXIEDGSEEEDAAALKKRNSNMIFGFSVPVETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLNDSPDRSRDEESEGCSSPVDGEEGKGKRVGSVSNSSSSAVVIEDGSEEEDAAALKKRNSNMIFGFSVPVETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKSRRGPRSRSSQYRGVTFYRRTG
Sbjct:    1 MWDLNDSPDRSRDEESEGCSSPVDGEEGKGKRVGSVSNSSSSAVVIEDGSEEEDAAALKKRNSNMIFGFSVPVETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKSRRGPRSRSSQYRGVTFYRRTG 157
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A0D2NVE1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G025900 PE=4 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.217e-84
Identity = 154/157 (98.09%), Postives = 156/157 (99.36%), Query Frame = 3 
Query:   87 MWDLNDSPDRSRDEESEGCSSPVDGEEGKGKRXXXXXXXXXXXXXIEDGSEEEDAAALKKRNSNMIFGFSVPVETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLNDSPDRSR EESEGCSSPVDGEEGKGKRVGSVSNSSSSAVVIEDGSEEEDAAALKKRNSNMIFGFSVPVE+GGPAPVTRQFFPLDQDPEMRAVP+GTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKSRRGPRSRSSQYRGVTFYRRTG
Sbjct:    1 MWDLNDSPDRSRGEESEGCSSPVDGEEGKGKRVGSVSNSSSSAVVIEDGSEEEDAAALKKRNSNMIFGFSVPVESGGPAPVTRQFFPLDQDPEMRAVPTGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKSRRGPRSRSSQYRGVTFYRRTG 157
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A0D2RFI2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G025900 PE=4 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.407e-84
Identity = 154/157 (98.09%), Postives = 156/157 (99.36%), Query Frame = 3 
Query:   87 MWDLNDSPDRSRDEESEGCSSPVDGEEGKGKRXXXXXXXXXXXXXIEDGSEEEDAAALKKRNSNMIFGFSVPVETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLNDSPDRSR EESEGCSSPVDGEEGKGKRVGSVSNSSSSAVVIEDGSEEEDAAALKKRNSNMIFGFSVPVE+GGPAPVTRQFFPLDQDPEMRAVP+GTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKSRRGPRSRSSQYRGVTFYRRTG
Sbjct:    1 MWDLNDSPDRSRGEESEGCSSPVDGEEGKGKRVGSVSNSSSSAVVIEDGSEEEDAAALKKRNSNMIFGFSVPVESGGPAPVTRQFFPLDQDPEMRAVPTGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKSRRGPRSRSSQYRGVTFYRRTG 157
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A0D2QER1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G025900 PE=4 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 5.440e-84
Identity = 154/157 (98.09%), Postives = 156/157 (99.36%), Query Frame = 3 
Query:   87 MWDLNDSPDRSRDEESEGCSSPVDGEEGKGKRXXXXXXXXXXXXXIEDGSEEEDAAALKKRNSNMIFGFSVPVETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLNDSPDRSR EESEGCSSPVDGEEGKGKRVGSVSNSSSSAVVIEDGSEEEDAAALKKRNSNMIFGFSVPVE+GGPAPVTRQFFPLDQDPEMRAVP+GTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKSRRGPRSRSSQYRGVTFYRRTG
Sbjct:    1 MWDLNDSPDRSRGEESEGCSSPVDGEEGKGKRVGSVSNSSSSAVVIEDGSEEEDAAALKKRNSNMIFGFSVPVESGGPAPVTRQFFPLDQDPEMRAVPTGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKSRRGPRSRSSQYRGVTFYRRTG 157
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A0D2QMA7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G025900 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 5.570e-84
Identity = 154/157 (98.09%), Postives = 156/157 (99.36%), Query Frame = 3 
Query:   87 MWDLNDSPDRSRDEESEGCSSPVDGEEGKGKRXXXXXXXXXXXXXIEDGSEEEDAAALKKRNSNMIFGFSVPVETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLNDSPDRSR EESEGCSSPVDGEEGKGKRVGSVSNSSSSAVVIEDGSEEEDAAALKKRNSNMIFGFSVPVE+GGPAPVTRQFFPLDQDPEMRAVP+GTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKSRRGPRSRSSQYRGVTFYRRTG
Sbjct:    1 MWDLNDSPDRSRGEESEGCSSPVDGEEGKGKRVGSVSNSSSSAVVIEDGSEEEDAAALKKRNSNMIFGFSVPVESGGPAPVTRQFFPLDQDPEMRAVPTGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKSRRGPRSRSSQYRGVTFYRRTG 157
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A061DI25_THECC (Eukaryotic elongation factor 5A-1 isoform 3 OS=Theobroma cacao GN=TCM_000665 PE=4 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.191e-47
Identity = 128/168 (76.19%), Postives = 135/168 (80.36%), Query Frame = 3 
Query:   87 MWDLNDSPDRSRDEESEGCSS---PVDGEEGKGKRXXXXXXXXXXXXXIEDGSEEEDA----AALKKRNSNMIFGFSVPVET----GGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLNDSPD+ RD+ESEGCSS    +DG+E KGKRVGSVSNSSSSAVVIEDGSEEED     AALKKR+S  IFGFSVP E       PAPVTRQFFPLDQDP M A   G+ QGFP AHWVGVKF QSEPLA  KSVE + PMKKSRRGPRSRSSQYRGVTFYRRTG
Sbjct:    1 MWDLNDSPDQPRDDESEGCSSQKTSIDGDEDKGKRVGSVSNSSSSAVVIEDGSEEEDGERLRAALKKRSSK-IFGFSVPHEEESMESDPAPVTRQFFPLDQDPGMGATSGGSGQGFPRAHWVGVKFCQSEPLAAGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTG 167
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A061DGM2_THECC (Transcription factor APETALA2 isoform 2 OS=Theobroma cacao GN=TCM_000665 PE=4 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 3.317e-47
Identity = 128/168 (76.19%), Postives = 135/168 (80.36%), Query Frame = 3 
Query:   87 MWDLNDSPDRSRDEESEGCSS---PVDGEEGKGKRXXXXXXXXXXXXXIEDGSEEEDA----AALKKRNSNMIFGFSVPVET----GGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLNDSPD+ RD+ESEGCSS    +DG+E KGKRVGSVSNSSSSAVVIEDGSEEED     AALKKR+S  IFGFSVP E       PAPVTRQFFPLDQDP M A   G+ QGFP AHWVGVKF QSEPLA  KSVE + PMKKSRRGPRSRSSQYRGVTFYRRTG
Sbjct:    1 MWDLNDSPDQPRDDESEGCSSQKTSIDGDEDKGKRVGSVSNSSSSAVVIEDGSEEEDGERLRAALKKRSSK-IFGFSVPHEEESMESDPAPVTRQFFPLDQDPGMGATSGGSGQGFPRAHWVGVKFCQSEPLAAGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTG 167
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A061DGG4_THECC (Transcription factor APETALA2 isoform 1 OS=Theobroma cacao GN=TCM_000665 PE=4 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.309e-46
Identity = 128/168 (76.19%), Postives = 135/168 (80.36%), Query Frame = 3 
Query:   87 MWDLNDSPDRSRDEESEGCSS---PVDGEEGKGKRXXXXXXXXXXXXXIEDGSEEEDA----AALKKRNSNMIFGFSVPVET----GGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLNDSPD+ RD+ESEGCSS    +DG+E KGKRVGSVSNSSSSAVVIEDGSEEED     AALKKR+S  IFGFSVP E       PAPVTRQFFPLDQDP M A   G+ QGFP AHWVGVKF QSEPLA  KSVE + PMKKSRRGPRSRSSQYRGVTFYRRTG
Sbjct:    1 MWDLNDSPDQPRDDESEGCSSQKTSIDGDEDKGKRVGSVSNSSSSAVVIEDGSEEEDGERLRAALKKRSSK-IFGFSVPHEEESMESDPAPVTRQFFPLDQDPGMGATSGGSGQGFPRAHWVGVKFCQSEPLAAGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTG 167
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A0B0PKS6_GOSAR (Floral homeotic protein APETALA 2 OS=Gossypium arboreum GN=F383_05795 PE=4 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.647e-45
Identity = 132/190 (69.47%), Postives = 144/190 (75.79%), Query Frame = 3 
Query:   30 YIVSS*FLIAEKVCEVKK-KMWDLNDSP-DRSRDEESEGCSS---PVDGEEGKGKRXXXXXXXXXXXXXIEDGSEEEDA----AALKKRNSNMIFGFSVP-----VETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            YI S   +I+   CE +  KMWDLNDSP  + RD+ESEGCSS    VDG+E KGKRVGSVSNSSSSAVV+EDGSEEE+     AALKKR++ MIFGF VP      E   PAPVTRQFFPLDQDPEM A   G+  GFP AHWVGVKF QSEPL  AKSVE + PMKKSRRGPRSRSSQYRGVTFYRRTG
Sbjct:   17 YISSFVKIISRGSCEKRDGKMWDLNDSPYQQPRDDESEGCSSQKTSVDGDEDKGKRVGSVSNSSSSAVVVEDGSEEEEGERVKAALKKRSNKMIFGFPVPGEEVFTENSVPAPVTRQFFPLDQDPEMGANCVGSGPGFPRAHWVGVKFCQSEPLPHAKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTG 206
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A0D2SP71_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G215900 PE=4 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.744e-43
Identity = 125/170 (73.53%), Postives = 134/170 (78.82%), Query Frame = 3 
Query:   87 MWDLNDSP-DRSRDEESEGCSS---PVDGEEGKGKRXXXXXXXXXXXXXIEDGSEEEDA----AALKKRNSNMIFGFSVP-----VETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLNDSP  + RD+ESEGCSS    VDG+E KGKRVGSVSNSSSSAVV+EDGSEEE+     AALKKR++ MIFGF VP      E   PAPVTRQFFPLDQDPEM A   G+  GFP AHWVGVKF QSEPL  AKSVE + PMKKSRRGPRSRSSQYRGVTFYRRTG
Sbjct:    1 MWDLNDSPYQQPRDDESEGCSSQKTSVDGDEDKGKRVGSVSNSSSSAVVVEDGSEEEEGERVKAALKKRSNKMIFGFPVPGEEVFTENSDPAPVTRQFFPLDQDPEMGANCVGSGPGFPRAHWVGVKFCQSEPLPHAKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTG 170
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy Swiss-Prot
Match: AP2_ARATH (Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.505e-17
Identity = 86/170 (50.59%), Postives = 103/170 (60.59%), Query Frame = 3 
Query:   87 MWDLNDSPDRS-RDEESE--GCSSPVDGEEGKGKRXXXXXXXXXXXXXIEDGSEEEDAAALKKRNSNMIFGFSVPVETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATN----------PMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLND+P ++ R+EESE    SSP        KRVGS SNSSSSAVVIEDGS++++   ++  N         P+       VT QFFP     EM +   G A GFP AHW GVKF QS+    + + +ATN          P+KKSRRGPRSRSSQYRGVTFYRRTG
Sbjct:    1 MWDLNDAPHQTQREEESEEFCYSSP-------SKRVGSFSNSSSSAVVIEDGSDDDELNRVRPNN---------PL-------VTHQFFP-----EMDSNGGGVASGFPRAHWFGVKFCQSDLATGSSAGKATNVAAAVVEPAQPLKKSRRGPRSRSSQYRGVTFYRRTG 142
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0NYY8_GOSAR5.813e-86100.00Floral homeotic APETALA 2-like protein OS=Gossypiu... [more]
A0A0D2NVE1_GOSRA1.217e-8498.09Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RFI2_GOSRA5.407e-8498.09Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QER1_GOSRA5.440e-8498.09Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QMA7_GOSRA5.570e-8498.09Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061DI25_THECC2.191e-4776.19Eukaryotic elongation factor 5A-1 isoform 3 OS=The... [more]
A0A061DGM2_THECC3.317e-4776.19Transcription factor APETALA2 isoform 2 OS=Theobro... [more]
A0A061DGG4_THECC1.309e-4676.19Transcription factor APETALA2 isoform 1 OS=Theobro... [more]
A0A0B0PKS6_GOSAR1.647e-4569.47Floral homeotic protein APETALA 2 OS=Gossypium arb... [more]
A0A0D2SP71_GOSRA1.744e-4373.53Uncharacterized protein OS=Gossypium raimondii GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AP2_ARATH1.505e-1750.59Floral homeotic protein APETALA 2 OS=Arabidopsis t... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031112AP2-like ethylene-responsive transcription factorPANTHERPTHR32467FAMILY NOT NAMEDcoord: 1..157
NoneNo IPR availablePANTHERPTHR32467:SF18FLORAL HOMEOTIC PROTEIN APETALA 2coord: 1..157

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0020780 ID=g.arboreum_cottongen_reftransV1_0020780; Name=g.arboreum_cottongen_reftransV1_0020780; organism=Gossypium arboreum; type=contig; length=557bp
GTTTTTTTGAGAATTTTCTGCTTTGAAAATATATAGTATCTTCGTGATTT
TTAATAGCTGAAAAAGTTTGTGAAGTGAAAAAAAAAATGTGGGATCTTAA
CGATTCTCCTGATCGTTCAAGAGACGAGGAATCGGAAGGGTGTTCATCGC
CGGTAGACGGCGAAGAAGGGAAGGGTAAACGGGTTGGATCCGTTTCGAAT
TCGAGTTCTTCCGCCGTGGTGATCGAGGATGGATCAGAGGAAGAAGATGC
AGCAGCTTTAAAGAAACGAAACAGTAACATGATTTTTGGGTTCTCGGTGC
CTGTCGAGACCGGTGGACCAGCTCCGGTGACTCGTCAGTTTTTTCCACTT
GACCAAGACCCAGAAATGAGGGCAGTTCCCAGCGGAACTGCACAAGGGTT
CCCCATGGCTCACTGGGTCGGAGTCAAATTCCGGCAATCGGAACCACTCG
CCGTTGCTAAATCCGTTGAAGCTACGAATCCCATGAAAAAAAGTAGAAGA
GGACCAAGGTCAAGAAGCTCTCAATATAGAGGTGTTACTTTCTATAGAAG
AACCGGC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR031112AP2-like_transcript_factor
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription
GO:0007275multicellular organism development
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity