g.arboreum_cottongen_reftransV1_0001626, g.arboreum_cottongen_reftransV1_0001626 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001626
Unique Nameg.arboreum_cottongen_reftransV1_0001626
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold3086supercontigg.arboreum_cottongen_reftransV1_0001626:1..1214 .
scaffold3086:40516..41983 -
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A0D2U1D5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G374900 PE=4 SV=1)

HSP 1 Score: 547.74 bits (1410), Expect = 0.000e+0
Identity = 263/281 (93.59%), Postives = 272/281 (96.80%), Query Frame = -3 
Query:  370 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANF 1212
            GGEAA LLFL+WIGI+IDF NIPYERHF+V+AEKFVNVQH ESLL+YSFQDPS LVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITP LLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVL DVMESLAGAIFVDSGY KEIVFQSIRPLLEPMIT ETMTV PVKELYELCQKEHY+LRKPIVSHEDG+SSITIEVEANGKVFKHTSTACDK+MAKKLASKE+LKSLKGANF
Sbjct:  795 GGEAAGLLFLDWIGISIDFTNIPYERHFKVRAEKFVNVQHFESLLHYSFQDPSLLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPGLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLGDVMESLAGAIFVDSGYKKEIVFQSIRPLLEPMITPETMTVHPVKELYELCQKEHYELRKPIVSHEDGISSITIEVEANGKVFKHTSTACDKKMAKKLASKEVLKSLKGANF 1075
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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A0D2SEW2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G374900 PE=4 SV=1)

HSP 1 Score: 547.354 bits (1409), Expect = 1.800e-179
Identity = 263/281 (93.59%), Postives = 272/281 (96.80%), Query Frame = -3 
Query:  370 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANF 1212
            GGEAA LLFL+WIGI+IDF NIPYERHF+V+AEKFVNVQH ESLL+YSFQDPS LVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITP LLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVL DVMESLAGAIFVDSGY KEIVFQSIRPLLEPMIT ETMTV PVKELYELCQKEHY+LRKPIVSHEDG+SSITIEVEANGKVFKHTSTACDK+MAKKLASKE+LKSLKGANF
Sbjct: 1025 GGEAAGLLFLDWIGISIDFTNIPYERHFKVRAEKFVNVQHFESLLHYSFQDPSLLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPGLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLGDVMESLAGAIFVDSGYKKEIVFQSIRPLLEPMITPETMTVHPVKELYELCQKEHYELRKPIVSHEDGISSITIEVEANGKVFKHTSTACDKKMAKKLASKEVLKSLKGANF 1305
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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A0D2UZA8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G374900 PE=4 SV=1)

HSP 1 Score: 547.354 bits (1409), Expect = 1.155e-178
Identity = 263/281 (93.59%), Postives = 272/281 (96.80%), Query Frame = -3 
Query:  370 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANF 1212
            GGEAA LLFL+WIGI+IDF NIPYERHF+V+AEKFVNVQH ESLL+YSFQDPS LVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITP LLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVL DVMESLAGAIFVDSGY KEIVFQSIRPLLEPMIT ETMTV PVKELYELCQKEHY+LRKPIVSHEDG+SSITIEVEANGKVFKHTSTACDK+MAKKLASKE+LKSLKGANF
Sbjct: 1114 GGEAAGLLFLDWIGISIDFTNIPYERHFKVRAEKFVNVQHFESLLHYSFQDPSLLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPGLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLGDVMESLAGAIFVDSGYKKEIVFQSIRPLLEPMITPETMTVHPVKELYELCQKEHYELRKPIVSHEDGISSITIEVEANGKVFKHTSTACDKKMAKKLASKEVLKSLKGANF 1394
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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A0B0PZJ0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_12835 PE=4 SV=1)

HSP 1 Score: 531.946 bits (1369), Expect = 1.012e-173
Identity = 256/282 (90.78%), Postives = 269/282 (95.39%), Query Frame = -3 
Query:  367 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANFC 1212
            GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLIT HLYN YPGI+P LLTDLRSASVNNNCYALSAVKAG HKHILQSSQKLYK IKETVESF+ELSL+ TFGWESEKSFPKVL DVMESLAGAIFVDSGYNKE VF+SIRPLLEP+ITLETMTV PVKEL ELCQK+HY+ RKPIVSH++GVSS+TIEVEANG+V KHTSTA D++MAKKLASKEILKSLKGANFC
Sbjct: 1009 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITRHLYNNYPGISPGLLTDLRSASVNNNCYALSAVKAGLHKHILQSSQKLYKHIKETVESFRELSLDCTFGWESEKSFPKVLGDVMESLAGAIFVDSGYNKETVFRSIRPLLEPLITLETMTVHPVKELNELCQKKHYEQRKPIVSHDNGVSSVTIEVEANGEVLKHTSTASDRKMAKKLASKEILKSLKGANFC 1290
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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A0B0Q103_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_12835 PE=4 SV=1)

HSP 1 Score: 531.946 bits (1369), Expect = 4.223e-173
Identity = 256/282 (90.78%), Postives = 269/282 (95.39%), Query Frame = -3 
Query:  367 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANFC 1212
            GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLIT HLYN YPGI+P LLTDLRSASVNNNCYALSAVKAG HKHILQSSQKLYK IKETVESF+ELSL+ TFGWESEKSFPKVL DVMESLAGAIFVDSGYNKE VF+SIRPLLEP+ITLETMTV PVKEL ELCQK+HY+ RKPIVSH++GVSS+TIEVEANG+V KHTSTA D++MAKKLASKEILKSLKGANFC
Sbjct: 1077 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITRHLYNNYPGISPGLLTDLRSASVNNNCYALSAVKAGLHKHILQSSQKLYKHIKETVESFRELSLDCTFGWESEKSFPKVLGDVMESLAGAIFVDSGYNKETVFRSIRPLLEPLITLETMTVHPVKELNELCQKKHYEQRKPIVSHDNGVSSVTIEVEANGEVLKHTSTASDRKMAKKLASKEILKSLKGANFC 1358
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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A0D2NN15_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G143000 PE=4 SV=1)

HSP 1 Score: 527.324 bits (1357), Expect = 4.809e-171
Identity = 254/282 (90.07%), Postives = 266/282 (94.33%), Query Frame = -3 
Query:  367 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANFC 1212
            GGE AALLF+NWIGITIDFRNIPYERHFEVQAEK VNVQHLESLLNYSFQDPS LVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLIT HLYNKYPGI+P LLTDLRSASVNNNCYALSAVKAG HKHILQSSQKLYK IKETVESFQELSL+ TFGWESEKSFPKVL DVMES+AGAIFVDSGYNKE VF+SIRPLLEP+ITLETMTV PVKEL ELCQK+HY+ RKPIVSH +GVSS+TIEVEANG+V KHTSTACDK+MAKKLASKEILKSLK ANFC
Sbjct: 1112 GGEVAALLFMNWIGITIDFRNIPYERHFEVQAEKIVNVQHLESLLNYSFQDPSLLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITRHLYNKYPGISPGLLTDLRSASVNNNCYALSAVKAGLHKHILQSSQKLYKHIKETVESFQELSLDCTFGWESEKSFPKVLGDVMESIAGAIFVDSGYNKETVFRSIRPLLEPLITLETMTVHPVKELNELCQKKHYEQRKPIVSHGNGVSSVTIEVEANGEVLKHTSTACDKKMAKKLASKEILKSLKLANFC 1393
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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A061F5E0_THECC (Dicer-like protein isoform 5 OS=Theobroma cacao GN=TCM_025106 PE=4 SV=1)

HSP 1 Score: 448.358 bits (1152), Expect = 7.230e-144
Identity = 212/279 (75.99%), Postives = 248/279 (88.89%), Query Frame = -3 
Query:  376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212
            GGEAA +LFLNWIGI +DF NIPY+R F+V AEK VNV+ LESLLNYSFQDPS LVEALTHGSYMLAEIP CYQR+EFLGDSVLDYLIT+HLY+KYP ++P LLTDLRSASVNN+CYALSAVKAG HK+IL +SQKL+K+I ETVESF+ELS++YTFGWE +KSFPKVLAD++ESLAGAIFVDSGY+K  VF+SIRPLLEP+IT ET+   PVKEL ELCQKEH++ R   VSH++GV+SIT EVEANG VFKHTS+A +K+MA+KLA KE+LKSLK +
Sbjct:  792 GGEAAGVLFLNWIGINVDFTNIPYQRQFKVHAEKLVNVRVLESLLNYSFQDPSLLVEALTHGSYMLAEIPECYQRMEFLGDSVLDYLITVHLYSKYPRMSPGLLTDLRSASVNNDCYALSAVKAGLHKYILHASQKLHKEIAETVESFKELSMKYTFGWECDKSFPKVLADIIESLAGAIFVDSGYDKHAVFRSIRPLLEPLITPETIKFHPVKELNELCQKEHFEQRPATVSHDNGVTSITTEVEANGMVFKHTSSASNKKMARKLACKEVLKSLKAS 1070
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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A061EXD5_THECC (Dicer-like protein isoform 6 OS=Theobroma cacao GN=TCM_025106 PE=4 SV=1)

HSP 1 Score: 447.973 bits (1151), Expect = 2.580e-143
Identity = 212/279 (75.99%), Postives = 248/279 (88.89%), Query Frame = -3 
Query:  376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212
            GGEAA +LFLNWIGI +DF NIPY+R F+V AEK VNV+ LESLLNYSFQDPS LVEALTHGSYMLAEIP CYQR+EFLGDSVLDYLIT+HLY+KYP ++P LLTDLRSASVNN+CYALSAVKAG HK+IL +SQKL+K+I ETVESF+ELS++YTFGWE +KSFPKVLAD++ESLAGAIFVDSGY+K  VF+SIRPLLEP+IT ET+   PVKEL ELCQKEH++ R   VSH++GV+SIT EVEANG VFKHTS+A +K+MA+KLA KE+LKSLK +
Sbjct:  829 GGEAAGVLFLNWIGINVDFTNIPYQRQFKVHAEKLVNVRVLESLLNYSFQDPSLLVEALTHGSYMLAEIPECYQRMEFLGDSVLDYLITVHLYSKYPRMSPGLLTDLRSASVNNDCYALSAVKAGLHKYILHASQKLHKEIAETVESFKELSMKYTFGWECDKSFPKVLADIIESLAGAIFVDSGYDKHAVFRSIRPLLEPLITPETIKFHPVKELNELCQKEHFEQRPATVSHDNGVTSITTEVEANGMVFKHTSSASNKKMARKLACKEVLKSLKAS 1107
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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A061EZA5_THECC (Dicer-like protein isoform 3 OS=Theobroma cacao GN=TCM_025106 PE=4 SV=1)

HSP 1 Score: 447.973 bits (1151), Expect = 1.388e-142
Identity = 212/279 (75.99%), Postives = 248/279 (88.89%), Query Frame = -3 
Query:  376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212
            GGEAA +LFLNWIGI +DF NIPY+R F+V AEK VNV+ LESLLNYSFQDPS LVEALTHGSYMLAEIP CYQR+EFLGDSVLDYLIT+HLY+KYP ++P LLTDLRSASVNN+CYALSAVKAG HK+IL +SQKL+K+I ETVESF+ELS++YTFGWE +KSFPKVLAD++ESLAGAIFVDSGY+K  VF+SIRPLLEP+IT ET+   PVKEL ELCQKEH++ R   VSH++GV+SIT EVEANG VFKHTS+A +K+MA+KLA KE+LKSLK +
Sbjct:  917 GGEAAGVLFLNWIGINVDFTNIPYQRQFKVHAEKLVNVRVLESLLNYSFQDPSLLVEALTHGSYMLAEIPECYQRMEFLGDSVLDYLITVHLYSKYPRMSPGLLTDLRSASVNNDCYALSAVKAGLHKYILHASQKLHKEIAETVESFKELSMKYTFGWECDKSFPKVLADIIESLAGAIFVDSGYDKHAVFRSIRPLLEPLITPETIKFHPVKELNELCQKEHFEQRPATVSHDNGVTSITTEVEANGMVFKHTSSASNKKMARKLACKEVLKSLKAS 1195
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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A061EY61_THECC (Dicer-like protein isoform 2 OS=Theobroma cacao GN=TCM_025106 PE=4 SV=1)

HSP 1 Score: 447.973 bits (1151), Expect = 1.012e-141
Identity = 212/279 (75.99%), Postives = 248/279 (88.89%), Query Frame = -3 
Query:  376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212
            GGEAA +LFLNWIGI +DF NIPY+R F+V AEK VNV+ LESLLNYSFQDPS LVEALTHGSYMLAEIP CYQR+EFLGDSVLDYLIT+HLY+KYP ++P LLTDLRSASVNN+CYALSAVKAG HK+IL +SQKL+K+I ETVESF+ELS++YTFGWE +KSFPKVLAD++ESLAGAIFVDSGY+K  VF+SIRPLLEP+IT ET+   PVKEL ELCQKEH++ R   VSH++GV+SIT EVEANG VFKHTS+A +K+MA+KLA KE+LKSLK +
Sbjct: 1022 GGEAAGVLFLNWIGINVDFTNIPYQRQFKVHAEKLVNVRVLESLLNYSFQDPSLLVEALTHGSYMLAEIPECYQRMEFLGDSVLDYLITVHLYSKYPRMSPGLLTDLRSASVNNDCYALSAVKAGLHKYILHASQKLHKEIAETVESFKELSMKYTFGWECDKSFPKVLADIIESLAGAIFVDSGYDKHAVFRSIRPLLEPLITPETIKFHPVKELNELCQKEHFEQRPATVSHDNGVTSITTEVEANGMVFKHTSSASNKKMARKLACKEVLKSLKAS 1300
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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL2_ARATH (Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 PE=1 SV=2)

HSP 1 Score: 359.377 bits (921), Expect = 1.474e-110
Identity = 178/279 (63.80%), Postives = 212/279 (75.99%), Query Frame = -3 
Query:  376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212
            GGE AAL+F+NW+GI +DF     +R   +QAEK VNV ++ESLLNYSF+D S LVEALTHGSYM+ EIP CYQRLEFLGDSVLDYLIT HLY+KYP ++P LLTD+RSASVNN CYAL AVKA  HKHIL +S  L+K I  TV  F++ SL+ TFGWES+ SFPKVL DV+ESLAGAIFVDSGYNKE+VF SI+PLL  MIT ET+ + PV+EL ELCQK  ++L K          S T+EV+A    F HT+ A DK+MAKKLA KE+L  LK +
Sbjct: 1112 GGELAALMFMNWVGIKVDFTTTKIQRDSPIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQKWQFELSKA-----KDFDSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLKNS 1385
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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL2A_ORYSJ (Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 2.612e-76
Identity = 135/277 (48.74%), Postives = 186/277 (67.15%), Query Frame = -3 
Query:  385 GGEAAALLFLNWIGITIDFRN-IPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSL 1212
             GE AA L +  +G+ I+F   IP ER   ++AE+F+NV+ LE +L Y F D   L+EALTHGSY  +    CYQRLEFLGD++LD+L T + Y+KYP  TP LLTDLRSASVNNNCYA +AVK+G +KHIL SS +L++ +   +E F +     ++GWE+    PKVL DV+ES+AGAI++DS  +KE+V++S++ LLEP+ T ET+   PVK L E C +  + +     +H DGVSS+   V+A    +  T +   K +AKKLASK +LK L
Sbjct: 1123 AGEKAAFLLMKSLGMNIEFHTEIPVERKISMKAEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCDRRSFKITYE-KNHVDGVSSVIARVKAGETTYSATKSGPCKLVAKKLASKAVLKDL 1398
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL2B_ORYSJ (Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.428e-72
Identity = 135/278 (48.56%), Postives = 186/278 (66.91%), Query Frame = -3 
Query:  385 GGEAAALLFLNWIGITIDFRN-IPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETV-ESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSL 1212
             GE AA L +  +G+ I+F   IP ER   ++AE+F++V+ LE +L Y F D   L+EALTHGSY  +    CYQRLEFLGD++LD+L T + Y+KYP  TP LLTDLRSASVNNNCYA +AVK+G +KHIL SS +L++ +   + +SF   S    +GWE+    PKVL DV+ES+AGAI++DS  +KE+V++S++ LLEP+ T ET+   PVK L E C +  + +     +H DGVSS+   V+A    +  T +   K +AKKLASK +LK L
Sbjct: 1094 AGEKAAFLLMKSLGMNIEFHTEIPVERKISMKAEEFIDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPS----YGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCDRRSFKITYE-KNHVDGVSSVIARVKAGETTYSATKSGPCK-LAKKLASKAVLKDL 1365
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL1_ORYSJ (Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.267e-50
Identity = 116/284 (40.85%), Postives = 169/284 (59.51%), Query Frame = -3 
Query:  382 GGEAAALLFLNWIGI--TIDFRNIPYERHFEVQAE--KFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLE---YTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLK 1212
            GG+ AA   + WIGI   +D   IP  + +++     + +N   L+ +L   FQ+   LVEA+TH S   + +  CYQRLEF+GD+VLD+LIT HL+  Y  + P  LTDLR+A+VNN  +A  AVK   H H+   S  L   I+E V+  QE  L+    +FG    K+ PKVL D++ES+AGAIF+DSGY+  +V++  +PLL PM+T ET+ + PV+EL E CQ++   L     S    ++  T+EV  +G V    +    K+MA+KLA++  L  LK
Sbjct: 1497 GGKIAANHLMKWIGIHAELDPEEIPPPKPYDIPESIMRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGV-SCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELLKPGFNSFGLGDCKA-PKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYK-ASRAGNIA--TVEVFVDG-VQIGVAQNPQKKMAQKLAARNALVVLK 1774
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL4_ORYSJ (Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.147e-48
Identity = 106/286 (37.06%), Postives = 160/286 (55.94%), Query Frame = -3 
Query:  370 GGEAAALLFLNWIGITIDFRNIPYERHFEVQA-----EKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANF 1212
            GG  AA  FL+WIGI +DF N    R  +  +       + ++  LE L+ Y F+    L++A  H S+      GCYQRLEFLGD+VL+Y+IT +LY+ YP I P  +TDLRS +V N+  A +AV+   HKH+++ S  L   I +  E + +LS       E E + PK L D++ES  GA+ +DSG+N   V++ +  LL+P++T   M   P++EL ELCQ   ++L  P     DG   + +EV    K+   T+   + + A+K A++E L  LK   +
Sbjct: 1172 GGFKAAFAFLHWIGIDVDFNNPALYRVLDSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFS-QHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISK-FEMYVKLSNSEKDLLE-EPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLPKPMKADGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKLKNYGY 1454
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL1_ARATH (Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 6.059e-43
Identity = 98/233 (42.06%), Postives = 142/233 (60.94%), Query Frame = -3 
Query:  544 GGEAAALLFLNWIGITIDFRNIPYE-----RHFEVQAE--KFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLE---YTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKE 1212
            GG+ AA   + WIGI ++  + P E     ++  V     K ++   LE  L Y F++   LVEA+TH S   + +  CYQRLEF+GD+VLD+LIT HL+  Y  + P  LTDLR+A+VNN  +A  AVK   H ++   S  L K I+E V+  Q  S +    +FG    K+ PKVL D++ES+AGAIF+DSG +    ++  +PLL+PM+T ET+ + PV+EL E CQ++
Sbjct: 1517 GGKIAANHLMKWIGIHVE--DDPDEVDGTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGV-SCYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFGLGDCKA-PKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQ 1745
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL3B_ORYSJ (Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica GN=DCL3B PE=3 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.113e-41
Identity = 91/226 (40.27%), Postives = 128/226 (56.64%), Query Frame = -3 
Query:  553 GGEAAALLFLNWIGITID-----FRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQEL-SLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELC 1212
            GG AAAL  + W GI I       + + +         K  +++ LE+ L Y+F     L+EA+TH S     +  CYQRLEFLGDSVLD L+T HLY  +  + P  LTDLRSA V+N  +A + V+   H H+   S  L + I E V S  E    E  F   +    PKVL D+MES+AGA+F+D+ +N ++V++   PLL P+IT + + + P +EL ELC
Sbjct: 1199 GGIAAALWVMRWFGIDIKCDMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLSPLITPDKLALPPYRELLELC 1424
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL4_ARATH (Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.611e-40
Identity = 99/286 (34.62%), Postives = 149/286 (52.10%), Query Frame = -3 
Query:  379 GEAAALLFLNWIGITIDFRN-------IPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQEL--SLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKG 1209
            G   A+ FL WIG+ +DF +       I   R+  +      N++ LE+ L+Y F     LV+A  H SY      GCYQRLEFLGD+VLDYL+T + +  +P + P  LTDLRS SVNN   A  AV     + +   S  L+    E +E +     S     G       PKVL D++ES  GA+F+D G+N   V+  +   L+P+  L  + + P+KEL ELCQ   +D R+   + +DG  ++ ++V  NG     ++T  +K    K A++ ++ +LK 
Sbjct: 1251 GFKGAVKFLKWIGVNVDFESLQVQDACIASRRYLPLTTRN--NLETLENQLDYKFLHKGLLVQAFIHPSYN-RHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLH----EVIEDYTNFLASSPLASGQSEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIELCQSYKWD-REISATKKDGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMITNLKA 1528
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: RTL3_ORYSJ (Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica GN=Os06g0358800 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.955e-40
Identity = 92/241 (38.17%), Postives = 140/241 (58.09%), Query Frame = -3 
Query:  382 VQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGC-YQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLK 1101
            V  +ESLL Y F+D + + EALTHGS+     PG  Y+RLE+LGD+VL  +++  ++  Y  + P  LT LR+A+V+    A  AV  G H  +   +  L   I + +E   ELS+ Y          PKVL DV+ESL GAI+ DS +N+EIV+Q  + L +P+I+LET+   PV EL+E CQK    ++   +  ++   ++T+EV  +G++    + A  KE+A+  A+K  L  LK
Sbjct:   39 VAAVESLLGYEFRDKALVEEALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSREVFLTYGQLQPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIE---ELSM-YPIHSNGLLDPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGKHPVSELFEFCQKTRRGVK---IVKDEWDKNLTVEVLIDGEMVGRATYAQKKEIAQNRAAKAALDKLK 272
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DICER_DANRE (Endoribonuclease Dicer OS=Danio rerio GN=dicer1 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 2.036e-38
Identity = 116/314 (36.94%), Postives = 163/314 (51.91%), Query Frame = -3 
Query:  379 GEAAALLFLNWIGITI----------------DFRNIPYERHFE-VQAEKFVN-----VQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESE-------------KSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTV--QPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKG 1209
            GE AA LFL  +G+ +                 +  IP    FE   AE+ +N       + ES +NY+F++ ++L++A TH SY    I  CYQRLEFLGD++LDYLIT HLY      +P +LTDLRSA VNN  +A  AVK  +HK+    S +L+  I + V+ FQ L      G +SE                PK + D+ ESLAGAI++DSG + E V+Q   P++ P+I   +  V   PV+EL E+ + E      P     DG   +T+EV   GK FK    +    +AK  A++  L+SLK 
Sbjct: 1551 GERAAQLFLCSLGLKVLPPEKQSSGGSAELQYGWLKIPPRCMFEHPDAERTLNHLISGFLNFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQ-FQ-LEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM-EPETAKF-SPAERTYDGKVRVTVEVVGKGK-FKGVGRS--YRIAKSAAARRALRSLKA 1857
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2U1D5_GOSRA0.000e+093.59Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2SEW2_GOSRA1.800e-17993.59Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2UZA8_GOSRA1.155e-17893.59Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0PZJ0_GOSAR1.012e-17390.78Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0B0Q103_GOSAR4.223e-17390.78Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2NN15_GOSRA4.809e-17190.07Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061F5E0_THECC7.230e-14475.99Dicer-like protein isoform 5 OS=Theobroma cacao GN... [more]
A0A061EXD5_THECC2.580e-14375.99Dicer-like protein isoform 6 OS=Theobroma cacao GN... [more]
A0A061EZA5_THECC1.388e-14275.99Dicer-like protein isoform 3 OS=Theobroma cacao GN... [more]
A0A061EY61_THECC1.012e-14175.99Dicer-like protein isoform 2 OS=Theobroma cacao GN... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
DCL2_ARATH1.474e-11063.80Endoribonuclease Dicer homolog 2 OS=Arabidopsis th... [more]
DCL2A_ORYSJ2.612e-7648.74Endoribonuclease Dicer homolog 2a OS=Oryza sativa ... [more]
DCL2B_ORYSJ1.428e-7248.56Endoribonuclease Dicer homolog 2b OS=Oryza sativa ... [more]
DCL1_ORYSJ7.267e-5040.85Endoribonuclease Dicer homolog 1 OS=Oryza sativa s... [more]
DCL4_ORYSJ1.147e-4837.06Endoribonuclease Dicer homolog 4 OS=Oryza sativa s... [more]
DCL1_ARATH6.059e-4342.06Endoribonuclease Dicer homolog 1 OS=Arabidopsis th... [more]
DCL3B_ORYSJ1.113e-4140.27Endoribonuclease Dicer homolog 3b OS=Oryza sativa ... [more]
DCL4_ARATH2.611e-4034.62Dicer-like protein 4 OS=Arabidopsis thaliana GN=DC... [more]
RTL3_ORYSJ7.955e-4038.17Ribonuclease 3-like protein 3 OS=Oryza sativa subs... [more]
DICER_DANRE2.036e-3836.94Endoribonuclease Dicer OS=Danio rerio GN=dicer1 PE... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000999Ribonuclease III domainSMARTSM00535riboneu5coord: 44..199
e-value: 4.3E-38
score: 142.6
IPR000999Ribonuclease III domainPFAMPF00636Ribonuclease_3coord: 65..176
e-value: 6.0E-21
score: 74.9
IPR000999Ribonuclease III domainGENE3D1.10.1520.10coord: 28..195
e-value: 2.6E-42
score: 143.2
IPR000999Ribonuclease III domainPROSITEPS00517RNASE_3_1coord: 65..73
IPR000999Ribonuclease III domainPROSITEPS50142RNASE_3_2coord: 29..176
score: 33.522
IPR000999Ribonuclease III domainSUPERFAMILY69065RNase III domain-likecoord: 28..122
coord: 156..196
IPR014720Double-stranded RNA-binding domainPFAMPF00035dsrmcoord: 203..267
e-value: 5.2E-6
score: 26.9
IPR014720Double-stranded RNA-binding domainGENE3D3.30.160.20coord: 202..268
e-value: 5.9E-5
score: 22.7
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 202..269
score: 9.392
NoneNo IPR availablePANTHERPTHR14950:SF19ENDORIBONUCLEASE DICER HOMOLOG 2coord: 1..268
NoneNo IPR availablePANTHERPTHR14950HELICASE-RELATEDcoord: 1..268
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 158..267

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001626 ID=g.arboreum_cottongen_reftransV1_0001626; Name=g.arboreum_cottongen_reftransV1_0001626; organism=Gossypium arboreum; type=contig; length=1214bp
CCATTAAGATAGAATAACAGTAGTGTTTAAAAGTGCAAGAACAAGATTTA
CAAAGATGAGCAAAAGACCTTATGATGTGTTCCAACCCAAATGGCAGATC
AATTAGTACCAAAAATGAACCAGCAACAACATTAAACAAAAAATTACCTG
CTCTCAACTTCTTGAAGCATTGCATGCAGCAACGAGTAAGATGCATTAAT
GGACACCGTTCTCATCACTAAAACAAGCTTTTTCAGATGCCAGAAAAAAT
GATGAAGATGCATTTTTCCTTTTCTTTTCTGATCAAGTAGTTTCTACTGA
GAAGAAGGCTGAATGTCTAAACCAAGCTCTTTGAGTAGCTAACATTGAGG
TCAACTGCAAAATCTAGCAAAAATTGGCTCCCTTTAGGGACTTCAAAATT
TCTTTGGAAGCCAGTTTCTTGGCCATCTCCTTATCACAAGCTGTGGATGT
GTGCTTGAATACCTTCCCATTTGCTTCAACCTCTATCGTAATAGAAGAAA
CGCCATCCTCATGTGAAACAATGGGTTTTCTTAGGTCATAATGCTCCTTT
TGACAGAGCTCATATAGCTCTTTGACAGGTTGAACCGTCATAGTCTCCAG
AGTAATCATGGGCTCCAACAGTGGCCTTATACTCTGGAATACGATTTCCT
TATTGTATCCTGAATCAACAAAAATAGCTCCAGCAAGTGACTCCATCACG
TCAGCAAGTACCTTGGGGAAAGATTTTTCAGATTCCCAGCCGAAAGTGTA
TTCCAATGATAATTCCTGAAAACTTTCGACGGTTTCTTTTATATCCTTGT
AAAGCTTCTGTGAACTTTGGAGAATGTGCTTATGAAATCCAGCCTTTACA
GCTGATAATGCATAGCAATTGTTGTTAACAGATGCTGACCTAAGATCCGT
TAATAATCTTGGCGTGATCCCAGGATATTTATTATATAAATGCAGAGTAA
TAAGATAATCTAAAACGGAGTCCCCTAGAAATTCCAGCCGCTGATAACAT
CCTGGAATTTCAGCAAGCATGTAAGAACCATGTGTTAGTGCTTCCACTAA
AAAAGAAGGGTCTTGAAATGAATAGTTAAGAAGAGACTCTAAATGTTGGA
CATTAACAAACTTTTCAGCCTGCACTTCGAAATGTCTTTCGTACGGTATA
TTTCTAAAATCAATAGTTATACCAATCCAATTCAAAAATAATAATGCAGC
AGCTTCACCTCCCA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR000999RNase_III_dom
IPR014720dsRBD_dom
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0004525ribonuclease III activity