g.arboreum_cottongen_reftransV1_0000951, g.arboreum_cottongen_reftransV1_0000951 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0000951
Unique Nameg.arboreum_cottongen_reftransV1_0000951
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length348
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A0B0MGV2_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_11887 PE=4 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.090e-41
Identity = 116/127 (91.34%), Postives = 116/127 (91.34%), Query Frame = 1 
Query:    1 QPSTVQ-----------KKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            QPSTVQ           KKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGILLPFIAPPSSPASFLLSDPPSATQSPAGLLSLASLSVNAYSPRGPASIFAIGPYAHETQ
Sbjct:   26 QPSTVQAIQFAELVSVKKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGILLPFIAPPSSPASFLLSDPPSATQSPAGLLSLASLSVNAYSPRGPASIFAIGPYAHETQ 152
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BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A0D2TDX5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G275500 PE=4 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.066e-39
Identity = 102/116 (87.93%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:    1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            QP+TVQKKRWGSCWSFYWCFGSH+SSKRIGHAVLVPE +VPG  V  A+NASNPTGI++PFIAPPSSPASFL SDPPSATQSPAGLLSL +LSVNAYSPRGPASIFAIGPYAHETQ
Sbjct:   26 QPTTVQKKRWGSCWSFYWCFGSHKSSKRIGHAVLVPEPVVPGALVSTAENASNPTGIVMPFIAPPSSPASFLQSDPPSATQSPAGLLSLTALSVNAYSPRGPASIFAIGPYAHETQ 141
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A0B0NFQ9_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_13171 PE=4 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.164e-39
Identity = 101/116 (87.07%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:    1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            QP+TVQKKRWGSCWSFYWCFGSH+SSKRIGHAVLVPE +VPG +V  A+NASNPTGI++PFIAPPSSPASFL SDPPSATQSPAGLLSL +LSVNAYSPRGPASIF+IGPYAHETQ
Sbjct:   26 QPTTVQKKRWGSCWSFYWCFGSHKSSKRIGHAVLVPEPVVPGASVSTAENASNPTGIVMPFIAPPSSPASFLQSDPPSATQSPAGLLSLTALSVNAYSPRGPASIFSIGPYAHETQ 141
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A0D2Q307_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G275500 PE=4 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.353e-37
Identity = 101/116 (87.07%), Postives = 108/116 (93.10%), Query Frame = 1 
Query:    1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            QP+TVQK RWGSCWSFYWCFGSH+SSKRIGHAVLVPE +VPG  V  A+NASNPTGI++PFIAPPSSPASFL SDPPSATQSPAGLLSL +LSVNAYSPRGPASIFAIGPYAHETQ
Sbjct:   26 QPTTVQK-RWGSCWSFYWCFGSHKSSKRIGHAVLVPEPVVPGALVSTAENASNPTGIVMPFIAPPSSPASFLQSDPPSATQSPAGLLSLTALSVNAYSPRGPASIFAIGPYAHETQ 140
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A0D2QDD4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G198500 PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.237e-36
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 1 
Query:    1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEA+VPGVAVVAAQNASNPTGILLPFIAPPSSPASFL SDP SATQSPAGLLSLASLSVNAYSPRGPASIFAIGPYAHETQ
Sbjct:   26 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEAVVPGVAVVAAQNASNPTGILLPFIAPPSSPASFLQSDPSSATQSPAGLLSLASLSVNAYSPRGPASIFAIGPYAHETQ 141
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A061G128_THECC (Hydroxyproline-rich glycoprotein family protein isoform 1 OS=Theobroma cacao GN=TCM_015219 PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.379e-36
Identity = 99/116 (85.34%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:    1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            QP+TVQKKRWGSCW  YWCFGS ++SKRIGHAVLVPE +VPG +V  A+N SNPTGI+LPFIAPPSSPASFL SDPPSATQSPAGLLSL SLSVNAYSPRGPASIFAIGPYAHETQ
Sbjct:   26 QPTTVQKKRWGSCWGLYWCFGSQKNSKRIGHAVLVPEPVVPGASVSTAENVSNPTGIILPFIAPPSSPASFLQSDPPSATQSPAGLLSLTSLSVNAYSPRGPASIFAIGPYAHETQ 141
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A0D2T150_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G198500 PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.517e-36
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 1 
Query:    1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEA+VPGVAVVAAQNASNPTGILLPFIAPPSSPASFL SDP SATQSPAGLLSLASLSVNAYSPRGPASIFAIGPYAHETQ
Sbjct:   26 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEAVVPGVAVVAAQNASNPTGILLPFIAPPSSPASFLQSDPSSATQSPAGLLSLASLSVNAYSPRGPASIFAIGPYAHETQ 141
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A0D2S6H4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G198500 PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.487e-36
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 1 
Query:    1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEA+VPGVAVVAAQNASNPTGILLPFIAPPSSPASFL SDP SATQSPAGLLSLASLSVNAYSPRGPASIFAIGPYAHETQ
Sbjct:   26 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEAVVPGVAVVAAQNASNPTGILLPFIAPPSSPASFLQSDPSSATQSPAGLLSLASLSVNAYSPRGPASIFAIGPYAHETQ 141
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A061G255_THECC (Hydroxyproline-rich glycoprotein family protein isoform 2 OS=Theobroma cacao GN=TCM_015219 PE=4 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.803e-34
Identity = 99/120 (82.50%), Postives = 106/120 (88.33%), Query Frame = 1 
Query:    1 QPSTVQ----KKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            QP+TVQ    KKRWGSCW  YWCFGS ++SKRIGHAVLVPE +VPG +V  A+N SNPTGI+LPFIAPPSSPASFL SDPPSATQSPAGLLSL SLSVNAYSPRGPASIFAIGPYAHETQ
Sbjct:   26 QPTTVQVHVYKKRWGSCWGLYWCFGSQKNSKRIGHAVLVPEPVVPGASVSTAENVSNPTGIILPFIAPPSSPASFLQSDPPSATQSPAGLLSLTSLSVNAYSPRGPASIFAIGPYAHETQ 145
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: F6H6K3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g00790 PE=4 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.804e-30
Identity = 90/116 (77.59%), Postives = 100/116 (86.21%), Query Frame = 1 
Query:    1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            QP+TVQK+RWGSC S YWCFGSHR SKRIGHAVLVPE +VPG    A++N +  T I+LPFIAPPSSPASFL SDPPS+TQSPAG LSL +LSVNAYSP GPAS+FAIGPYAHETQ
Sbjct:   26 QPTTVQKRRWGSCLSLYWCFGSHRHSKRIGHAVLVPEPMVPGAVAPASENLNLSTSIVLPFIAPPSSPASFLQSDPPSSTQSPAGFLSLTALSVNAYSPSGPASMFAIGPYAHETQ 141
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0MGV2_GOSAR2.090e-4191.34Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2TDX5_GOSRA2.066e-3987.93Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0NFQ9_GOSAR3.164e-3987.07Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2Q307_GOSRA5.353e-3787.07Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QDD4_GOSRA2.237e-3697.41Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061G128_THECC2.379e-3685.34Hydroxyproline-rich glycoprotein family protein is... [more]
A0A0D2T150_GOSRA2.517e-3697.41Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2S6H4_GOSRA3.487e-3697.41Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061G255_THECC2.803e-3482.50Hydroxyproline-rich glycoprotein family protein is... [more]
F6H6K3_VITVI3.804e-3077.59Putative uncharacterized protein OS=Vitis vinifera... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31798FAMILY NOT NAMEDcoord: 1..78
NoneNo IPR availablePANTHERPTHR31798:SF4SUBFAMILY NOT NAMEDcoord: 1..78

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0000951 ID=g.arboreum_cottongen_reftransV1_0000951; Name=g.arboreum_cottongen_reftransV1_0000951; organism=Gossypium arboreum; type=contig; length=348bp
CAGCCTTCAACCGTTCAGAAGAAAAGATGGGGAAGCTGCTGGAGTTTTTA
CTGGTGTTTTGGATCTCACAGAAGCAGTAAGCGAATAGGTCATGCTGTTC
TTGTCCCCGAAGCATTGGTACCTGGAGTTGCAGTTGTAGCTGCACAAAAT
GCAAGTAATCCAACTGGCATTCTATTGCCCTTTATTGCCCCTCCCTCATC
TCCTGCATCATTTCTCCTATCAGATCCTCCTTCTGCCACCCAGTCGCCTG
CTGGATTGCTATCCCTAGCATCGCTTTCAGTTAATGCCTACTCCCCCCGT
GGACCTGCATCTATTTTTGCCATTGGCCCTTATGCACATGAAACCCAG
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