g.arboreum_cottongen_reftransV1_0015138, g.arboreum_cottongen_reftransV1_0015138 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0015138
Unique Nameg.arboreum_cottongen_reftransV1_0015138
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr10chromosomeg.arboreum_cottongen_reftransV1_0015138:1..303 .
Chr10:88738030..88738332 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A0D2RXD9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G099300 PE=4 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.518e-56
Identity = 93/101 (92.08%), Postives = 96/101 (95.05%), Query Frame = 1
Query:    1 GSNCDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDKPAWMNLQAHSEFLALELEDLVF 303
            GSNCDHQLVFDLVNEALLEIN MSPEYFPNPFSFNSRISLV KGNNV QQVW+KVSKNLASQ +HDQSLDDIIARDLDKPAWMNLQA SEF+ALELEDLVF
Sbjct:  663 GSNCDHQLVFDLVNEALLEINGMSPEYFPNPFSFNSRISLVPKGNNVVQQVWSKVSKNLASQPQHDQSLDDIIARDLDKPAWMNLQADSEFVALELEDLVF 763          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A061GX28_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_041843 PE=4 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.826e-42
Identity = 76/102 (74.51%), Postives = 84/102 (82.35%), Query Frame = 1
Query:    1 GSNCDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDKPA-WMNLQAHSEFLALELEDLVF 303
            GSNCDHQLVFDLVNEALLEI E    YFPNP+ FN R+  +LKGNNV Q+VWTKVSKNLASQ E DQSLDDI+A D  K A WMNLQA +EF+ALELE+LVF
Sbjct:  155 GSNCDHQLVFDLVNEALLEITEKPYIYFPNPYFFNRRLGPMLKGNNVLQEVWTKVSKNLASQPETDQSLDDIVAPDFAKDASWMNLQAEAEFVALELEELVF 256          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A061GW74_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_041612 PE=4 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.407e-35
Identity = 66/93 (70.97%), Postives = 73/93 (78.49%), Query Frame = 1
Query:    1 GSNCDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDKPAWMNLQAHSEFLA 279
            GSN D QLV+DLVNEA LE NE S  YFP PFSFN RIS +LK NNV Q+ WTKVS+NLAS+ EHDQSLDDI+ARD  K AWMN QA  EF+A
Sbjct:  766 GSNYDQQLVYDLVNEAFLESNEKSSIYFPKPFSFNCRISPMLKENNVLQETWTKVSRNLASRPEHDQSLDDIVARDFAKDAWMNPQAEEEFVA 858          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: V4RTS1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027797mg PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.039e-25
Identity = 52/99 (52.53%), Postives = 74/99 (74.75%), Query Frame = 1
Query:   10 CDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDKP-AWMNLQAHSEFLALELEDLVF 303
            CDHQL+FDL+NE LLE+NE S  YFP  FSFN R+  + KG+ + ++VW+++   L+ ++E D+SLDDI+A+DL K   WMN +  +E +ALELEDL+F
Sbjct:  752 CDHQLLFDLINELLLEMNETSFTYFPRAFSFNHRMRPMPKGHRLIEEVWSRICYYLSFRSEADRSLDDIVAQDLTKGDGWMNHEFETECVALELEDLIF 850          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A067GBV6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002967mg PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.099e-25
Identity = 52/99 (52.53%), Postives = 74/99 (74.75%), Query Frame = 1
Query:   10 CDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDKP-AWMNLQAHSEFLALELEDLVF 303
            CDHQL+FDL+NE LLE+NE S  YFP  FSFN R+  + KG+ + ++VW+++   L+ ++E D+SLDDI+A+DL K   WMN +  +E +ALELEDL+F
Sbjct:  752 CDHQLLFDLINELLLEMNETSFTYFPRAFSFNHRMRPMPKGHRLIEEVWSRICYYLSFRSEADRSLDDIVAQDLTKGDGWMNHEFETECVALELEDLIF 850          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A067GBH7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002967mg PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.134e-25
Identity = 52/99 (52.53%), Postives = 74/99 (74.75%), Query Frame = 1
Query:   10 CDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDKP-AWMNLQAHSEFLALELEDLVF 303
            CDHQL+FDL+NE LLE+NE S  YFP  FSFN R+  + KG+ + ++VW+++   L+ ++E D+SLDDI+A+DL K   WMN +  +E +ALELEDL+F
Sbjct:  753 CDHQLLFDLINELLLEMNETSFTYFPRAFSFNHRMRPMPKGHRLIEEVWSRICYYLSFRSEADRSLDDIVAQDLTKGDGWMNHEFETECVALELEDLIF 851          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A072VCX1_MEDTR (GTP-binding protein Obg/CgtA protein OS=Medicago truncatula GN=MTR_2g096870 PE=4 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.066e-24
Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 1
Query:   10 CDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303
            CDHQL+F+LVNE L +I E SP YFP PF+FN ++  + KGN + ++VW  VS  L  + E DQ+LDD++ RDL K   WMNLQ   E ++LELE+++ 
Sbjct:  584 CDHQLLFNLVNEVLFQIYENSPTYFPKPFAFNYKLKPMPKGNYLVKEVWDSVSSYLRLRPELDQTLDDVVGRDLTKGSGWMNLQQEEECVSLELEEMII 682          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A072VCE5_MEDTR (GTP-binding protein Obg/CgtA protein OS=Medicago truncatula GN=MTR_2g096870 PE=4 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.143e-24
Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 1
Query:   10 CDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303
            CDHQL+F+LVNE L +I E SP YFP PF+FN ++  + KGN + ++VW  VS  L  + E DQ+LDD++ RDL K   WMNLQ   E ++LELE+++ 
Sbjct:  622 CDHQLLFNLVNEVLFQIYENSPTYFPKPFAFNYKLKPMPKGNYLVKEVWDSVSSYLRLRPELDQTLDDVVGRDLTKGSGWMNLQQEEECVSLELEEMII 720          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A0D2QSX5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G132000 PE=4 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.565e-24
Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 1
Query:   13 DHQLVFDLVNEALLEINEMSPEY-FPNPFSFNSRISLVLKGNNVF-QQVWTKVSKNLASQAEHDQSLDDIIARDLDKPAWMNLQAHSEFLALELEDLVF 303
            DHQLVFDLVNEAL+ ++E +  + FP PF  N  I L+ KGN V  Q+VW  VS N+  Q EHD SLDDI+ RD++K AWM LQ   +F+ALEL++LVF
Sbjct:  409 DHQLVFDLVNEALVGMSEKACVHKFPKPF--NRGIGLMFKGNAVLLQEVWRYVSGNMGFQQEHDGSLDDIVGRDMEKDAWMFLQGEDDFVALELQELVF 505          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A0D2RLZ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G132000 PE=4 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.656e-24
Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 1
Query:   13 DHQLVFDLVNEALLEINEMSPEY-FPNPFSFNSRISLVLKGNNVF-QQVWTKVSKNLASQAEHDQSLDDIIARDLDKPAWMNLQAHSEFLALELEDLVF 303
            DHQLVFDLVNEAL+ ++E +  + FP PF  N  I L+ KGN V  Q+VW  VS N+  Q EHD SLDDI+ RD++K AWM LQ   +F+ALEL++LVF
Sbjct:  414 DHQLVFDLVNEALVGMSEKACVHKFPKPF--NRGIGLMFKGNAVLLQEVWRYVSGNMGFQQEHDGSLDDIVGRDMEKDAWMFLQGEDDFVALELQELVF 510          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy Swiss-Prot
Match: TRM32_ARATH (Protein TRM32 OS=Arabidopsis thaliana GN=TRM32 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.636e-16
Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 1
Query:   13 DHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLAS-QAE-HDQSLDDIIARDL--DKPAWMNLQAHSEFLALELEDLVF 303
            D +L+FDLVNEA++E    S  YFP  F +         G     +VW +V  +L+   AE  D+SLDDI+ RDL      WMNLQ  SE+L LELEDL+F
Sbjct:  450 DKELLFDLVNEAIVETQNHSQIYFPKTFPY---------GKRYLDEVWGRVEWSLSGLGAENRDRSLDDIVGRDLLTKSDGWMNLQGESEWLTLELEDLIF 541          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2RXD9_GOSRA4.518e-5692.08Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061GX28_THECC2.826e-4274.51Uncharacterized protein OS=Theobroma cacao GN=TCM_... [more]
A0A061GW74_THECC6.407e-3570.97Uncharacterized protein OS=Theobroma cacao GN=TCM_... [more]
V4RTS1_9ROSI3.039e-2552.53Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A067GBV6_CITSI3.099e-2552.53Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067GBH7_CITSI3.134e-2552.53Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A072VCX1_MEDTR1.066e-2450.51GTP-binding protein Obg/CgtA protein OS=Medicago t... [more]
A0A072VCE5_MEDTR1.143e-2450.51GTP-binding protein Obg/CgtA protein OS=Medicago t... [more]
A0A0D2QSX5_GOSRA1.565e-2456.57Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RLZ1_GOSRA1.656e-2456.57Uncharacterized protein OS=Gossypium raimondii GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TRM32_ARATH1.636e-1645.54Protein TRM32 OS=Arabidopsis thaliana GN=TRM32 PE=... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025486Domain of unknown function DUF4378PFAMPF14309DUF4378coord: 1..94
e-value: 2.2E-13
score: 50.9
NoneNo IPR availablePANTHERPTHR21726PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATEDcoord: 1..94
NoneNo IPR availablePANTHERPTHR21726:SF39SUBFAMILY NOT NAMEDcoord: 1..94

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0015138 ID=g.arboreum_cottongen_reftransV1_0015138; Name=g.arboreum_cottongen_reftransV1_0015138; organism=Gossypium arboreum; type=contig; length=303bp
GGAAGCAACTGTGATCACCAACTGGTTTTTGATCTAGTTAATGAGGCACT
ACTTGAGATCAATGAAATGTCACCTGAATATTTCCCCAACCCCTTCTCTT
TCAACTCTCGCATTAGTTTAGTGCTCAAGGGAAACAATGTTTTTCAACAA
GTGTGGACCAAAGTCAGCAAAAACTTGGCATCCCAAGCTGAACATGACCA
GTCATTGGATGATATTATTGCTCGAGATTTGGACAAACCCGCTTGGATGA
ACCTTCAAGCCCATTCAGAATTTTTGGCACTTGAGCTAGAAGATTTGGTT
TTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR025486DUF4378