g.arboreum_cottongen_reftransV1_0015169, g.arboreum_cottongen_reftransV1_0015169 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0015169
Unique Nameg.arboreum_cottongen_reftransV1_0015169
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length908
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0015169:1..908 .
Chr11:21023303..21024288 -
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A0B0PLX3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_06750 PE=4 SV=1)

HSP 1 Score: 374.785 bits (961), Expect = 6.124e-122
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = -3 
Query:  370 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR 906
            STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR
Sbjct:  441 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR 619
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BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A0D2SZY2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G180100 PE=4 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 2.225e-118
Identity = 175/179 (97.77%), Postives = 177/179 (98.88%), Query Frame = -3 
Query:  370 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR 906
            STTPVYIVAGEIYGSNSMATLRA+YPNIFSHSTLATEEELELVK YQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINP+RQNFVKLIDQLDAGVI WEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR
Sbjct:  451 STTPVYIVAGEIYGSNSMATLRAEYPNIFSHSTLATEEELELVKPYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPDRQNFVKLIDQLDAGVIYWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR 629
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BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A0D2QC51_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G180100 PE=4 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 2.663e-118
Identity = 175/179 (97.77%), Postives = 177/179 (98.88%), Query Frame = -3 
Query:  370 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR 906
            STTPVYIVAGEIYGSNSMATLRA+YPNIFSHSTLATEEELELVK YQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINP+RQNFVKLIDQLDAGVI WEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR
Sbjct:  451 STTPVYIVAGEIYGSNSMATLRAEYPNIFSHSTLATEEELELVKPYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPDRQNFVKLIDQLDAGVIYWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR 629
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BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A0D2RY79_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G180100 PE=4 SV=1)

HSP 1 Score: 365.54 bits (937), Expect = 3.231e-118
Identity = 175/179 (97.77%), Postives = 177/179 (98.88%), Query Frame = -3 
Query:  370 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR 906
            STTPVYIVAGEIYGSNSMATLRA+YPNIFSHSTLATEEELELVK YQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINP+RQNFVKLIDQLDAGVI WEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR
Sbjct:  449 STTPVYIVAGEIYGSNSMATLRAEYPNIFSHSTLATEEELELVKPYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPDRQNFVKLIDQLDAGVIYWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR 627
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BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A0B0PAP0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_05466 PE=4 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 1.150e-95
Identity = 143/175 (81.71%), Postives = 158/175 (90.29%), Query Frame = -3 
Query:  382 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQR 906
            S+TP+YIVAGEIYGSNSMA  R+++PN++SHSTLATEEELEL K YQNRLAALDYIVA ESDVFVYT+DGNMAKA QGHRRFEGFRKTINP+RQNFVKLIDQLD GVI+WE FS EVKSLH DRLGAPY+RQ GESPRLEENFYANPLPGCICK SQ ++ S  K ++TLSSVQR
Sbjct:  459 SSTPIYIVAGEIYGSNSMAAFRSEFPNVYSHSTLATEEELELFKPYQNRLAALDYIVALESDVFVYTHDGNMAKAVQGHRRFEGFRKTINPDRQNFVKLIDQLDEGVITWEMFSSEVKSLHSDRLGAPYMRQTGESPRLEENFYANPLPGCICKTSQVQKISGPKFDQTLSSVQR 633
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BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A0D2VY07_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G110800 PE=4 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 3.332e-94
Identity = 141/175 (80.57%), Postives = 157/175 (89.71%), Query Frame = -3 
Query:  382 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQR 906
            S+TP+YIVAGEIYGSNSMA  R+++PN++SHSTLATEEELEL K YQNRLAALDYIVA ESDVFVYT+DGNMAKA QGHRRFEGFRKTINP+RQNFVKLIDQLD G I+WE FS EVKSLH DRLGAPY+RQ GESPRLEENFYANPLPGCICK SQ ++ S  K ++TLSSV+R
Sbjct:  459 SSTPIYIVAGEIYGSNSMAAFRSEFPNVYSHSTLATEEELELFKPYQNRLAALDYIVALESDVFVYTHDGNMAKAVQGHRRFEGFRKTINPDRQNFVKLIDQLDEGFITWEMFSSEVKSLHSDRLGAPYMRQTGESPRLEENFYANPLPGCICKTSQVQKISGPKFDQTLSSVRR 633
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BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A061ESF6_THECC (O-fucosyltransferase family protein isoform 2 OS=Theobroma cacao GN=TCM_021783 PE=4 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 7.499e-91
Identity = 144/175 (82.29%), Postives = 160/175 (91.43%), Query Frame = -3 
Query:  382 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQR 906
            S+TP+YIVAGEIYG NSMA  RA+YPN+F+HSTLATEEELEL+K YQNRLAALDYIVA ESDVFVYTYDGNMAKA QGHRRFEGFRKTINP+R NFV+LIDQLD GVISWE+FS EVKSLH DRLGAPYLR+PGESPRLEENFYANPLPGCIC RS+E+Q  SLK ++ L+SV+R
Sbjct:  344 SSTPIYIVAGEIYGQNSMAAFRAEYPNVFTHSTLATEEELELLKPYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFRKTINPDRVNFVRLIDQLDGGVISWEQFSSEVKSLHSDRLGAPYLRRPGESPRLEENFYANPLPGCICNRSREQQIISLKFDKNLNSVRR 518
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BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A0D2SX24_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G377900 PE=4 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 7.689e-91
Identity = 137/175 (78.29%), Postives = 153/175 (87.43%), Query Frame = -3 
Query:  382 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQR 906
            S+TP+YIVAG+IYG +SMA  R++YPN+FSHSTLATE+EL+L++ YQNRLAALDYIVA ESDVFVYTYDGNM K+ QGHRRFEGFRKTI P+RQN VKLIDQLD GVISWE+FS EVK LH DRLGAPYLRQPGESPRLEENFYANPLPGCIC R       SL+LE+ LSSVQR
Sbjct:  450 SSTPIYIVAGDIYGRDSMAAFRSEYPNVFSHSTLATEQELKLLEPYQNRLAALDYIVALESDVFVYTYDGNMGKSVQGHRRFEGFRKTIKPDRQNVVKLIDQLDEGVISWEQFSTEVKHLHLDRLGAPYLRQPGESPRLEENFYANPLPGCICSR-------SLELEQNLSSVQR 617
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A061ER49_THECC (O-fucosyltransferase family protein isoform 1 OS=Theobroma cacao GN=TCM_021783 PE=4 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 2.500e-89
Identity = 144/175 (82.29%), Postives = 160/175 (91.43%), Query Frame = -3 
Query:  382 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQR 906
            S+TP+YIVAGEIYG NSMA  RA+YPN+F+HSTLATEEELEL+K YQNRLAALDYIVA ESDVFVYTYDGNMAKA QGHRRFEGFRKTINP+R NFV+LIDQLD GVISWE+FS EVKSLH DRLGAPYLR+PGESPRLEENFYANPLPGCIC RS+E+Q  SLK ++ L+SV+R
Sbjct:  470 SSTPIYIVAGEIYGQNSMAAFRAEYPNVFTHSTLATEEELELLKPYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFRKTINPDRVNFVRLIDQLDGGVISWEQFSSEVKSLHSDRLGAPYLRRPGESPRLEENFYANPLPGCICNRSREQQIISLKFDKNLNSVRR 644
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BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: V4SU21_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011279mg PE=4 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 6.672e-89
Identity = 136/172 (79.07%), Postives = 150/172 (87.21%), Query Frame = -3 
Query:  391 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSS 906
            STT +YIVAGEIYGS+SMA  R ++PN+FSHSTLATEEELE  K YQNRLAALDY+VA ESDVFV+TYDGNMAKA QGHRRFEGFRK+INP++QN V+LIDQLD G ISWEEFS EVKSLH DRLG PYLRQPGESPRLEENFYANP PGCIC RSQE+  + LKL+  LSS
Sbjct:  457 STTTIYIVAGEIYGSSSMAAFREEFPNVFSHSTLATEEELEPFKPYQNRLAALDYLVALESDVFVHTYDGNMAKAVQGHRRFEGFRKSINPDKQNIVRLIDQLDEGAISWEEFSSEVKSLHSDRLGGPYLRQPGESPRLEENFYANPFPGCICDRSQER-VAGLKLDERLSS 627
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BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.478e-15
Identity = 54/165 (32.73%), Postives = 87/165 (52.73%), Query Frame = -3 
Query:  424 STTPVYIVAGEIYGSNS-MATLRADYPNIFSHSTLATEEELELVKSYQNRL-AALDYIVAFESDVFVYTYDG--NMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQT 906
            ++T +Y+ AGE++G    M   R  +P + +HS++   EEL    + Q  + +A+DY+V   SD+F+ TYDG  N A    GHR + GFR TI P+R+    +    + G  +  E ++    L  +  G P+ R    SP   E+FY N  P C C+ + +K +
Sbjct:  327 NSTRIYLAAGELFGGEQFMKPFRTLFPRLDNHSSVDPSEELS--ATSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTN-FGGPHKRV---SP---ESFYTNSWPECFCQMNPKKSS 482
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0PLX3_GOSAR6.124e-122100.00Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2SZY2_GOSRA2.225e-11897.77Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QC51_GOSRA2.663e-11897.77Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RY79_GOSRA3.231e-11897.77Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0PAP0_GOSAR1.150e-9581.71Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2VY07_GOSRA3.332e-9480.57Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061ESF6_THECC7.499e-9182.29O-fucosyltransferase family protein isoform 2 OS=T... [more]
A0A0D2SX24_GOSRA7.689e-9178.29Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061ER49_THECC2.500e-8982.29O-fucosyltransferase family protein isoform 1 OS=T... [more]
V4SU21_9ROSI6.672e-8979.07Uncharacterized protein OS=Citrus clementina GN=CI... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1491_ARATH3.478e-1532.73Uncharacterized protein At1g04910 OS=Arabidopsis t... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019378GDP-fucose protein O-fucosyltransferasePFAMPF10250O-FucTcoord: 1..65
e-value: 4.2E-12
score: 46.3
NoneNo IPR availablePANTHERPTHR31741:SF4O-FUCOSYLTRANSFERASE FAMILY PROTEINcoord: 1..158
NoneNo IPR availablePANTHERPTHR31741FAMILY NOT NAMEDcoord: 1..158

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0015169 ID=g.arboreum_cottongen_reftransV1_0015169; Name=g.arboreum_cottongen_reftransV1_0015169; organism=Gossypium arboreum; type=contig; length=908bp
GGAAAATCGAGAACTAGTCTCCGTTATGTAAGAGACTAATTTGGCAAATG
TTATGTTTCTACAATCAATTATTGAAAGAATAACGAATAAATCAATATCA
TGATTCCAGTGTGACATATATGGTCGTGTGCCTGTAGAACTAGCCTGATT
TGCCCCAGAATTATACATCATCTTCTCTGCTTACCTAAGTTGCTGGTTTC
GGTCCTCTAACAAAAACTCAAATAGCTACTGTATAATTCAAGTGAGAAAT
CGGAAACCACAAGATTTCACAGCCTAGTAGGTGATTGCTGCAAGTCTCTT
TACCAGGGGAAACCACCAGAATCAAAGAATTTAAAATGCAGTGTATAATT
CAACTGACACGATTGACTACCTTAAATACCGTCTTTGAACTGAACTCAAG
GTCCGCTCAAGCTTCAGGCTGCTAGTTTGCTTTTCCTGGGATCTTTTGCA
GATGCATCCAGGAAGAGGATTTGCATAAAAATTCTCCTCCAGTCGTGGTG
ACTCCCCCGGCTGTCTTAGGTACGGCGCTCCAAGCCTGTCGAAATGTAAA
CTCTTTACTTCCAAAGAAAACTCTTCCCAAGATATTACACCCGCATCTAG
CTGATCGATGAGTTTGACAAAATTTTGTCTGTTGGGGTTGATTGTCTTTC
GAAATCCTTCAAACCTTCGGTGACCCTGCGTTGCTTTAGCCATATTCCCA
TCATATGTATAAACAAAGACATCGCTTTCAAATGCCACAATATAATCCAA
TGCAGCTAGGCGATTCTGGTATGACTTGACCAATTCCAACTCTTCCTCAG
TTGCCAAAGTAGAATGAGAAAAGATATTTGGATAATCGGCACGTAGTGTT
GCCATGCTGTTGCTGCCATAAATTTCTCCGGCAACAATATAGACAGGCGT
GGTGGAAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR019378GDP-Fuc_O-FucTrfase