g.arboreum_cottongen_reftransV1_0011002, g.arboreum_cottongen_reftransV1_0011002 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011002
Unique Nameg.arboreum_cottongen_reftransV1_0011002
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length315
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr7chromosomeg.arboreum_cottongen_reftransV1_0011002:1..315 .
Chr7:71207990..71208604 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: A0A0B0P2H4_GOSAR (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like protein OS=Gossypium arboreum GN=F383_28327 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 8.755e-51
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKPFDGXXXXXXXXXXXXXXXASKSGAKSSLQKK 315
            VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKPFDGPRLLPAERRPPLKLPASKSGAKSSLQKK
Sbjct:  706 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKPFDGPRLLPAERRPPLKLPASKSGAKSSLQKK 810
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: A0A0D2TXZ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G362600 PE=4 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.819e-49
Identity = 102/104 (98.08%), Postives = 102/104 (98.08%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKPFDGXXXXXXXXXXXXXXXASKSGAKSSLQK 312
            VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKPFDGPRLLPAER PPLKLPASKSGAKSSL K
Sbjct:  712 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKPFDGPRLLPAERSPPLKLPASKSGAKSSLHK 815
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: A0A0D2UZ11_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G362600 PE=4 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.813e-41
Identity = 94/104 (90.38%), Postives = 94/104 (90.38%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKPFDGXXXXXXXXXXXXXXXASKSGAKSSLQK 312
            VVQGSRSVE        GAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKPFDGPRLLPAER PPLKLPASKSGAKSSL K
Sbjct:  712 VVQGSRSVE--------GAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKPFDGPRLLPAERSPPLKLPASKSGAKSSLHK 807
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: A0A061F834_THECC (Trehalose-6-phosphate synthase isoform 2 OS=Theobroma cacao GN=TCM_032130 PE=4 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.728e-40
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKPFDGXXXXXXXXXXXXXXXASKSGAKSSLQK 312
            VVQGSRSVEVRAVGVTKGAAIDRILGEIVH+ SMTTPIDYVLC+GHFLGKDEDVYTFFEPELP D  SI R+KP DG   LPAERR  LKLPAS+SGAKSS  K
Sbjct:  727 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCVGHFLGKDEDVYTFFEPELPSDVTSITRTKPTDG-PRLPAERRAALKLPASRSGAKSSQTK 829
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: A0A061FGD6_THECC (Trehalose-6-phosphate synthase isoform 1 OS=Theobroma cacao GN=TCM_032130 PE=4 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.642e-40
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKPFDGXXXXXXXXXXXXXXXASKSGAKSSLQK 312
            VVQGSRSVEVRAVGVTKGAAIDRILGEIVH+ SMTTPIDYVLC+GHFLGKDEDVYTFFEPELP D  SI R+KP DG   LPAERR  LKLPAS+SGAKSS  K
Sbjct:  761 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCVGHFLGKDEDVYTFFEPELPSDVTSITRTKPTDG-PRLPAERRAALKLPASRSGAKSSQTK 863
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: A0A059BUH5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03232 PE=4 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.814e-39
Identity = 83/104 (79.81%), Postives = 88/104 (84.62%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKPFDGXXXXXXXXXXXXXXXASKSGAKSSLQK 312
            VVQGSRSVEVRAVGVTKGAAIDRILGEIVH+ SMTTPIDYVLCIGHFLGKDEDVYTFFEPELP DAL I R+K  DG    P E+R  LKL ASKSG+K+S  K
Sbjct:  746 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPCDALGIPRTKATDG-LKSPGEKRSSLKLQASKSGSKASAVK 848
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: B9I078_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10490g PE=4 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 7.787e-38
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKPFDG 231
            VVQG+RSVEVRAVGVTKGAAIDRILGEIVH+ SMTTPIDYVLCIGHFLGKDEDVYTFFEPELP D+L++AR+K  DG
Sbjct:  746 VVQGNRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDSLAVARTKQNDG 822
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: U5GW69_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s39220g PE=4 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.108e-37
Identity = 85/104 (81.73%), Postives = 90/104 (86.54%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKPFDGXXXXXXXXXXXXXXXASKSGAKSSLQK 312
            VVQGSRSVEVR+VGVTKGAAIDRILGEIVH+ SMTTPIDYVLCIGHFLGKDEDVYTFFEPELP D L  AR+K  DG   LP ERRPP+KLPAS+SG KSS  K
Sbjct:  746 VVQGSRSVEVRSVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDGLVAARTKQNDG-PKLPNERRPPMKLPASRSGPKSSQGK 848
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: W8PVS8_ARATH (Glycosyltransferase (Fragment) OS=Arabidopsis thaliana GN=AT1G78580 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.284e-37
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKP 222
            VVQGSRSVEVRAVGVTKGAAIDRILGEIVH+ SMTTPIDYVLCIGHFLGKDEDVYTFFEPELP D  +IARS+P
Sbjct:  751 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDMPAIARSRP 824
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: V4K8B2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018081mg PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.919e-37
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKP 222
            VVQGSRSVEVRAVGVTKGAAIDRILGEIVH+ SMTTPIDYVLCIGHFLGKDEDVYTFFEPELP D  +IARS+P
Sbjct:  751 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDIPAIARSRP 824
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy Swiss-Prot
Match: TPS1_ARATH (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 OS=Arabidopsis thaliana GN=TPS1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.648e-39
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKP 222
            VVQGSRSVEVRAVGVTKGAAIDRILGEIVH+ SMTTPIDYVLCIGHFLGKDEDVYTFFEPELP D  +IARS+P
Sbjct:  751 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDMPAIARSRP 824
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy Swiss-Prot
Match: TPS4_ARATH (Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 4 OS=Arabidopsis thaliana GN=TPS4 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.012e-27
Identity = 51/62 (82.26%), Postives = 56/62 (90.32%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPEL 186
            VV+G +SVEV AVGVTKG+A++RILGEIVH  SM TPIDYVLCIG FLGKDEDVYTFFEPEL
Sbjct:  669 VVRGGQSVEVHAVGVTKGSAMERILGEIVHNKSMATPIDYVLCIGCFLGKDEDVYTFFEPEL 730
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy Swiss-Prot
Match: TPS2_ARATH (Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 2 OS=Arabidopsis thaliana GN=TPS2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.622e-23
Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPEL 186
            VV+G+ SVEV A+G TKGAAI RILGEIVH  SMTTPID+V C G+FL KDED+YTFFE ++
Sbjct:  665 VVRGNHSVEVHAIGETKGAAIGRILGEIVHRKSMTTPIDFVFCSGYFLEKDEDIYTFFESKI 726
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy Swiss-Prot
Match: TPS3_ARATH (Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3 OS=Arabidopsis thaliana GN=TPS3 PE=3 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 7.976e-21
Identity = 44/68 (64.71%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALS 204
            VV+G  SVEV A+GVTK   I  ILGEIVH  +MTTPIDYV C G+FL KDED+YTFFE E+    LS
Sbjct:  642 VVRGKYSVEVHAIGVTKEPEIGHILGEIVHKKAMTTPIDYVFCSGYFLEKDEDIYTFFESEILSPKLS 709
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0P2H4_GOSAR8.755e-51100.00Alpha,alpha-trehalose-phosphate synthase [UDP-form... [more]
A0A0D2TXZ4_GOSRA2.819e-4998.08Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2UZ11_GOSRA1.813e-4190.38Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061F834_THECC3.728e-4083.65Trehalose-6-phosphate synthase isoform 2 OS=Theobr... [more]
A0A061FGD6_THECC4.642e-4083.65Trehalose-6-phosphate synthase isoform 1 OS=Theobr... [more]
A0A059BUH5_EUCGR1.814e-3979.81Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
B9I078_POPTR7.787e-3887.01Uncharacterized protein OS=Populus trichocarpa GN=... [more]
U5GW69_POPTR1.108e-3781.73Uncharacterized protein OS=Populus trichocarpa GN=... [more]
W8PVS8_ARATH2.284e-3790.54Glycosyltransferase (Fragment) OS=Arabidopsis thal... [more]
V4K8B2_EUTSA2.919e-3790.54Uncharacterized protein OS=Eutrema salsugineum GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TPS1_ARATH2.648e-3990.54Alpha,alpha-trehalose-phosphate synthase [UDP-form... [more]
TPS4_ARATH1.012e-2782.26Probable alpha,alpha-trehalose-phosphate synthase ... [more]
TPS2_ARATH9.622e-2370.97Probable alpha,alpha-trehalose-phosphate synthase ... [more]
TPS3_ARATH7.976e-2164.71Probable alpha,alpha-trehalose-phosphate synthase ... [more]
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011002 ID=g.arboreum_cottongen_reftransV1_0011002; Name=g.arboreum_cottongen_reftransV1_0011002; organism=Gossypium arboreum; type=contig; length=315bp
GTCGTTCAAGGAAGCCGATCGGTTGAGGTACGAGCAGTTGGCGTTACAAA
GGGGGCAGCCATTGATCGTATTTTGGGAGAGATTGTTCACACTACATCAA
TGACAACTCCGATCGACTATGTTCTTTGCATCGGACATTTTCTGGGGAAG
GATGAAGATGTTTACACCTTTTTCGAACCCGAGCTGCCTTTTGATGCATT
GAGCATAGCAAGAAGCAAGCCATTTGATGGACCACGGTTATTACCTGCTG
AAAGAAGGCCTCCATTGAAGCTCCCAGCAAGCAAAAGTGGAGCTAAATCG
TCATTACAAAAAAAG
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