g.arboreum_cottongen_reftransV1_0005970, g.arboreum_cottongen_reftransV1_0005970 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0005970
Unique Nameg.arboreum_cottongen_reftransV1_0005970
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length491
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0005970:1..491 .
Chr1:3158847..3159337 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A0B0NZG4_GOSAR (Receptor-like protein kinase HSL1 OS=Gossypium arboreum GN=F383_05889 PE=4 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 2.562e-55
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = -3
Query:    1 MSKTRXXXXXXXXXXXTVIYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 372
            MSKTRFTFLFFIFFFITVIYSQSINHNERTLLLNVKQQLGNPPSISSWNSSSSPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY
Sbjct:    1 MSKTRFTFLFFIFFFITVIYSQSINHNERTLLLNVKQQLGNPPSISSWNSSSSPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 124          
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A0D2PTU5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G026000 PE=4 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.004e-52
Identity = 121/124 (97.58%), Postives = 122/124 (98.39%), Query Frame = -3
Query:    1 MSKTRXXXXXXXXXXXTVIYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 372
            MSKTRFTFLFFIFFFITVIYSQS+NHNERTLLLNVKQQL NPPSISSWNSSSSPCDWPEIICTAGSVT LHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY
Sbjct:    1 MSKTRFTFLFFIFFFITVIYSQSVNHNERTLLLNVKQQLDNPPSISSWNSSSSPCDWPEIICTAGSVTRLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 124          
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A0D2Q963_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G048200 PE=4 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.050e-32
Identity = 79/106 (74.53%), Postives = 89/106 (83.96%), Query Frame = -3
Query:    1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318
            + SQ IN  ER +LLN KQQLGNPP + SWNSSSSPCDWPEI CTA SVT +HLRDKNI T IP +ICDLKNLTFLDL+ N+IPGEFP+ LYNCSKLQ L++SQNY
Sbjct:   20 VTSQDINA-ERDVLLNFKQQLGNPPFLQSWNSSSSPCDWPEINCTANSVTEVHLRDKNITTPIPSTICDLKNLTFLDLAFNYIPGEFPA-LYNCSKLQTLDLSQNY 123          
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A0D2TJM0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G048200 PE=4 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.061e-32
Identity = 79/106 (74.53%), Postives = 89/106 (83.96%), Query Frame = -3
Query:    1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318
            + SQ IN  ER +LLN KQQLGNPP + SWNSSSSPCDWPEI CTA SVT +HLRDKNI T IP +ICDLKNLTFLDL+ N+IPGEFP+ LYNCSKLQ L++SQNY
Sbjct:   20 VTSQDINA-ERDVLLNFKQQLGNPPFLQSWNSSSSPCDWPEINCTANSVTEVHLRDKNITTPIPSTICDLKNLTFLDLAFNYIPGEFPA-LYNCSKLQTLDLSQNY 123          
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A067GMK7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001706mg PE=4 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.728e-30
Identity = 73/106 (68.87%), Postives = 84/106 (79.25%), Query Frame = -3
Query:    1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318
            +  QS N  ERT+LLN+KQQLGNPPS+ SW S+SSPCDWPEI CT  SVTG+ LR K+I   IPP ICDLKNLT +DLS N IPGEFP  LYNC+KLQ L++SQNY
Sbjct:   27 VIPQSPNTEERTILLNLKQQLGNPPSLQSWTSTSSPCDWPEITCTFNSVTGISLRHKDITQKIPPIICDLKNLTTIDLSSNSIPGEFPEFLYNCTKLQNLDLSQNY 132          
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A067GX52_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001706mg PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.746e-30
Identity = 73/106 (68.87%), Postives = 84/106 (79.25%), Query Frame = -3
Query:    1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318
            +  QS N  ERT+LLN+KQQLGNPPS+ SW S+SSPCDWPEI CT  SVTG+ LR K+I   IPP ICDLKNLT +DLS N IPGEFP  LYNC+KLQ L++SQNY
Sbjct:   27 VIPQSPNTEERTILLNLKQQLGNPPSLQSWTSTSSPCDWPEITCTFNSVTGISLRHKDITQKIPPIICDLKNLTTIDLSSNSIPGEFPEFLYNCTKLQNLDLSQNY 132          
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A0B0PIY8_GOSAR (Receptor-like protein kinase HSL1 OS=Gossypium arboreum GN=F383_03081 PE=4 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.838e-30
Identity = 76/106 (71.70%), Postives = 87/106 (82.08%), Query Frame = -3
Query:    1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318
            + SQ IN  ER +LLN KQ+LGNPP + SWNSSSSPCDWPEI CTA SVT +HL DKNI T IP +ICDLKNLT LDL+ N+IPGEFP+ LYNCSKLQ L++SQNY
Sbjct:   20 VISQDINA-ERDVLLNFKQRLGNPPFLQSWNSSSSPCDWPEINCTANSVTEVHLHDKNITTPIPSTICDLKNLTLLDLAFNYIPGEFPA-LYNCSKLQTLDLSQNY 123          
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: B9INH9_POPTR (Leucine-rich repeat family protein OS=Populus trichocarpa GN=POPTR_0018s04880g PE=4 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.682e-28
Identity = 68/106 (64.15%), Postives = 86/106 (81.13%), Query Frame = -3
Query:    1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318
            + SQ +N  E+T+LLN+KQQLGNP SI SWNSSSSPC+WP++ C  G+VTGL L +KNI  TIP S+CDLKNLT+L+L+ N+IPG FP  LYNC KL+ L++SQNY
Sbjct:   21 VISQDVNA-EKTILLNLKQQLGNPSSIQSWNSSSSPCEWPDVYCVEGAVTGLDLGNKNITQTIPASVCDLKNLTYLNLNWNYIPGGFPKLLYNCKKLEELDLSQNY 125          
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: B9RS14_RICCO (Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0801630 PE=4 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.074e-27
Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = -3
Query:    1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTA-GSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318
            + SQ  N  E+++LLN+KQQLGNPPS+ SW +S+SPC WPEI C+  GSVT L LRDKNI   IP  ICDLKNLT LDL+ N+IPG FP+ LYNCS L+ L++SQNY
Sbjct:   27 VISQITNTQEQSILLNIKQQLGNPPSLQSWTTSTSPCTWPEISCSDDGSVTALGLRDKNITVAIPARICDLKNLTVLDLAYNYIPGGFPTFLYNCSSLERLDLSQNY 133          
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A061GIW0_THECC (Kinase family protein with leucine-rich repeat domain, putative OS=Theobroma cacao GN=TCM_037228 PE=4 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.217e-27
Identity = 73/105 (69.52%), Postives = 83/105 (79.05%), Query Frame = -3
Query:    4 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 318
            + SQ IN  ERT+LLN+K+QLGNPPS+  WNSSSSPCDW EI CT  SVT + LR   I   IPP+ICDLKNL  LDLS N IPGEFP+TLYNCSKL+YL+ISQN
Sbjct:   20 VISQDIN-TERTVLLNLKRQLGNPPSLGHWNSSSSPCDWQEIGCTNNSVTAVILRKIPITVRIPPTICDLKNLIGLDLSFNMIPGEFPTTLYNCSKLKYLDISQN 123          
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: Y1743_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.334e-9
Identity = 32/71 (45.07%), Postives = 40/71 (56.34%), Query Frame = -3
Query:    4 CDWPEIICT--AGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210
            C WP IICT     VTG++L D  I   +  +   L  LT+LDLS N I GE P  L  C  L++LN+S N
Sbjct:   75 CQWPGIICTPQRSRVTGINLTDSTISGPLFKNFSALTELTYLDLSRNTIEGEIPDDLSRCHNLKHLNLSHN 145          
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 1.594e-7
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = -3
Query:    4 CDWPEIIC--TAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210
            C W  + C   + SV  L+L   N+   I P+I DL+NL  +DL  N + G+ P  + NC+ L YL++S+N
Sbjct:   59 CSWRGVFCDNVSYSVVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSEN 129          
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: Y5694_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 4.648e-7
Identity = 31/72 (43.06%), Postives = 39/72 (54.17%), Query Frame = -3
Query:    4 CDWPEIICTAGS---VTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210
            C+W  I CT      V+ ++L+  N+   I  SICDL  LT LDLSLNF     P  L  C  L+ LN+S N
Sbjct:   62 CNWTGITCTRAPTLYVSSINLQSLNLSGEISDSICDLPYLTHLDLSLNFFNQPIPLQLSRCVTLETLNLSSN 133          
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: PEPR1_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 8.074e-7
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = -3
Query:    4 CDWPEIICT-AGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210
            C+W  I C  + +V  L+     +   + P I +LK+L  LDLS N   G  PSTL NC+KL  L++S+N
Sbjct:   64 CNWFGITCDDSKNVASLNFTRSRVSGQLGPEIGELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSEN 133          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0NZG4_GOSAR2.562e-55100.00Receptor-like protein kinase HSL1 OS=Gossypium arb... [more]
A0A0D2PTU5_GOSRA1.004e-5297.58Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2Q963_GOSRA1.050e-3274.53Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2TJM0_GOSRA1.061e-3274.53Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A067GMK7_CITSI1.728e-3068.87Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067GX52_CITSI1.746e-3068.87Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A0B0PIY8_GOSAR1.838e-3071.70Receptor-like protein kinase HSL1 OS=Gossypium arb... [more]
B9INH9_POPTR9.682e-2864.15Leucine-rich repeat family protein OS=Populus tric... [more]
B9RS14_RICCO1.074e-2763.55Serine-threonine protein kinase, plant-type, putat... [more]
A0A061GIW0_THECC1.217e-2769.52Kinase family protein with leucine-rich repeat dom... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
Y1743_ARATH2.334e-945.07Probable LRR receptor-like serine/threonine-protei... [more]
ERL1_ARATH1.594e-738.03LRR receptor-like serine/threonine-protein kinase ... [more]
Y5694_ARATH4.648e-743.06Probably inactive leucine-rich repeat receptor-lik... [more]
PEPR1_ARATH8.074e-740.00Leucine-rich repeat receptor-like protein kinase P... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 26..123
e-value: 4.7E-18
score: 64.4
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 26..123
IPR013210Leucine-rich repeat-containing N-terminal, plant-typePFAMPF08263LRRNT_2coord: 27..62
e-value: 3.5E-8
score: 33.4
NoneNo IPR availablePANTHERPTHR27000FAMILY NOT NAMEDcoord: 1..124
NoneNo IPR availablePANTHERPTHR27000:SF78SUBFAMILY NOT NAMEDcoord: 1..124
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..124
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.893
NoneNo IPR availableTMHMMTMhelixcoord: 7..24

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0005970 ID=g.arboreum_cottongen_reftransV1_0005970; Name=g.arboreum_cottongen_reftransV1_0005970; organism=Gossypium arboreum; type=contig; length=491bp
ATAGTTTTGAGAAATGTTTAGGTATTGAAGCTTTGAACAATTGTAAAGCG
TACTAGGGAATTCCCCGGGGATGAAATTCAAGGAAAGGTCTAGGAAAGTG
AGGTTTTTGAGGTCACATATCGACGGCGGAATCGTTGTCATGATGTTTTT
GTCACGGAGGTGGAGTCCGGTGACGGAACCGGCGGTGCAGATTATCTCCG
GCCAATCACACGGCGAAGATGATGAGTTCCATGAAGAAATGGACGGTGGA
TTGCCCAGTTGCTGCTTAACGTTGAGAAGAAGGGTTCGTTCATTGTGGTT
TATGGACTGTGAATAAATCACTGTGATGAAGAAGAAGATGAAGAAGAGAA
ATGTGAACCGGGTTTTAGACATGGGAACCGAACTTTAAGGCCGTTTATTT
GTTCCGGTTTGGTTCTGTTTCGCCGGGGAATTTGATCGGGTTTATTCTTA
ACGGTTGCGGGTTTTCAAAGTTTCATTTGTGACTGAGTTTG
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR013210LRR_N_plant-typ