g.arboreum_cottongen_reftransV1_0019162, g.arboreum_cottongen_reftransV1_0019162 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019162
Unique Nameg.arboreum_cottongen_reftransV1_0019162
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length886
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr2chromosomeg.arboreum_cottongen_reftransV1_0019162:1..886 .
Chr2:49171671..49174355 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A0D2MCZ8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G190800 PE=4 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 2.780e-89
Identity = 136/142 (95.77%), Postives = 138/142 (97.18%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDAP 427
            RWLLDIENCKVWKLDAMYSSAVF VDTCEKTHDCNVAQQTT LQERI DYF+GD+NLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSS WSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDAP
Sbjct:  820 RWLLDIENCKVWKLDAMYSSAVFVVDTCEKTHDCNVAQQTTCLQERILDYFKGDSNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSTWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDAP 961          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A0D2QFF9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G190800 PE=4 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 5.660e-89
Identity = 136/142 (95.77%), Postives = 138/142 (97.18%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDAP 427
            RWLLDIENCKVWKLDAMYSSAVF VDTCEKTHDCNVAQQTT LQERI DYF+GD+NLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSS WSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDAP
Sbjct:  838 RWLLDIENCKVWKLDAMYSSAVFVVDTCEKTHDCNVAQQTTCLQERILDYFKGDSNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSTWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDAP 979          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A061E749_THECC (DEAD/DEAH box RNA helicase family protein isoform 2 OS=Theobroma cacao GN=TCM_010767 PE=4 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 3.165e-78
Identity = 119/146 (81.51%), Postives = 133/146 (91.10%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDAP*IFA 439
            RWLLDIENCKVWKLD +YS+ VFAVD CEK H CNV+QQT+ LQ+R+ DYF+GDNN DVLDKM  NSPFLRADIKVFLQSNS++KFTPRA+ARIMHGIGSPAYPSS WS++HFWGRY QIDFKAVMNAAKAELM+FVGKDAP +FA
Sbjct:  781 RWLLDIENCKVWKLDTVYSAVVFAVDACEKAHGCNVSQQTSCLQQRVLDYFKGDNNPDVLDKMTHNSPFLRADIKVFLQSNSHIKFTPRAVARIMHGIGSPAYPSSTWSKSHFWGRYTQIDFKAVMNAAKAELMSFVGKDAP-LFA 925          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A061EEY2_THECC (DEAD/DEAH box RNA helicase family protein isoform 1 OS=Theobroma cacao GN=TCM_010767 PE=4 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 8.795e-78
Identity = 117/142 (82.39%), Postives = 130/142 (91.55%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDAP 427
            RWLLDIENCKVWKLD +YS+ VFAVD CEK H CNV+QQT+ LQ+R+ DYF+GDNN DVLDKM  NSPFLRADIKVFLQSNS++KFTPRA+ARIMHGIGSPAYPSS WS++HFWGRY QIDFKAVMNAAKAELM+FVGKDAP
Sbjct:  781 RWLLDIENCKVWKLDTVYSAVVFAVDACEKAHGCNVSQQTSCLQQRVLDYFKGDNNPDVLDKMTHNSPFLRADIKVFLQSNSHIKFTPRAVARIMHGIGSPAYPSSTWSKSHFWGRYTQIDFKAVMNAAKAELMSFVGKDAP 922          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: V4VFR2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030662mg PE=4 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 2.656e-64
Identity = 100/140 (71.43%), Postives = 119/140 (85.00%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKD 421
            +WL ++ENCKV KLD M+ +AVFAVD CEKTH CN +  T  LQ+ I DYFRGD+N DV +K+GQ+SPFLRADIKVFLQSN N KFTPRA+ARI+HGI SPAYPS+IWS+THFWGRY+QI+F+ VM AAKAEL+NF GKD
Sbjct:  753 KWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHFWGRYVQINFQVVMEAAKAELLNFAGKD 892          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: D7TAN9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g02590 PE=4 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.512e-62
Identity = 100/141 (70.92%), Postives = 117/141 (82.98%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424
            +WL ++E+CKV KLD M+++AV AV+ CEK   C  AQ T  LQ +ISDYF GD N D+ +KM Q+SPFLRADIKVFLQSNS VKFTPRA+ARIMHGI SPAYPS+ WSRTHFWGRY+Q+DF+ VM AAKAELMNFVGKDA
Sbjct:  547 KWLSEVESCKVQKLDTMFNAAVSAVELCEKKCGCLGAQHTPCLQRKISDYFSGDGNGDIPNKMDQSSPFLRADIKVFLQSNSQVKFTPRAVARIMHGIASPAYPSATWSRTHFWGRYMQMDFQVVMKAAKAELMNFVGKDA 687          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A061E794_THECC (DEAD/DEAH box RNA helicase family protein isoform 3 OS=Theobroma cacao GN=TCM_010767 PE=4 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.976e-60
Identity = 94/136 (69.12%), Postives = 111/136 (81.62%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNF 409
            RWLLDIENCKVWKLD +YS+ VFAVD CEK H CNV+QQT+ LQ+R+ DYF+GDNN DVLDKM  NSPFLRADIKVFLQSNS++KFTPRA+ARIMHGIGSPAYPSS WS++HFWG+     F++    ++     F
Sbjct:  781 RWLLDIENCKVWKLDTVYSAVVFAVDACEKAHGCNVSQQTSCLQQRVLDYFKGDNNPDVLDKMTHNSPFLRADIKVFLQSNSHIKFTPRAVARIMHGIGSPAYPSSTWSKSHFWGKVYTDRFQSSYECSEGRTYEF 916          

HSP 2 Score: 63.929 bits (154), Expect = 4.400e-8
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1
Query:  328 KNSFLGKVYTNRFQGGNECSKGRTHEFCWERCTLDLCLM 444
            K+ F GKVYT+RFQ   ECS+GRT+EFCWERCT  +CL+
Sbjct:  890 KSHFWGKVYTDRFQSSYECSEGRTYEFCWERCTF-VCLV 927          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: B9HTB0_POPTR (ATP-dependent DNA helicase family protein OS=Populus trichocarpa GN=POPTR_0010s06660g PE=4 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 7.593e-60
Identity = 97/141 (68.79%), Postives = 113/141 (80.14%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424
            +WLL++E  KV KLDAM+++A+FAV+ CEK   C+  Q T  LQ +I DYF+ D   D+ +KMGQ+SPFLRADIKVFLQ NS  KFTPRAIARIMHGI SPAYPS+ WSRTHFWGRY QIDF+ VM AAK ELMNFVGKDA
Sbjct:  780 KWLLEVECFKVQKLDAMFNAAIFAVNDCEKMQGCHGTQHTPCLQRKILDYFKDDGRRDIPNKMGQSSPFLRADIKVFLQGNSQAKFTPRAIARIMHGIASPAYPSATWSRTHFWGRYTQIDFQVVMEAAKVELMNFVGKDA 920          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A067K3E5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17918 PE=4 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 7.704e-60
Identity = 94/141 (66.67%), Postives = 112/141 (79.43%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424
            RWL +IE+ KV KLDAM+++A FAV+ CEK   CN A  T  LQ +I DYF+ D   D+L+KM Q+SPFLRAD+KVFLQSNS+ KFTPRAIARIMHGI SPAYPS+ WS++HFWGRY  IDF  VM AA+ ELMNFVGK+A
Sbjct:  218 RWLSEIESYKVRKLDAMFNAAAFAVNDCEKMQGCNDAHHTPCLQRKIMDYFKEDGTHDILNKMCQSSPFLRADVKVFLQSNSHAKFTPRAIARIMHGIPSPAYPSTTWSKSHFWGRYTHIDFPVVMEAARTELMNFVGKEA 358          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: K7KQ98_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.282e-59
Identity = 89/140 (63.57%), Postives = 109/140 (77.86%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKD 421
            RWL ++ENCKV K+DAM+++A FA++ C+    C  A  T  LQ +I DYF G +N D   K+GQ+SPFLRAD+KVFLQSNS+ +FTPRA+AR+MHGI SPAYPS+ WS+THFWGRY  IDFK VM AAK EL NFVGKD
Sbjct:   50 RWLSEVENCKVRKMDAMFNAAYFALNLCDNMQGCGGANHTPCLQRKILDYFSGVDNADFCKKIGQSSPFLRADLKVFLQSNSHARFTPRAVARVMHGIASPAYPSTAWSKTHFWGRYTHIDFKEVMEAAKEELKNFVGKD 189          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Match: RQL5_ARATH (ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana GN=RECQL5 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 2.906e-50
Identity = 83/141 (58.87%), Postives = 103/141 (73.05%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424
            +WL +IE+CKV KLD M S+AV A+     +   + A+QT  LQ RI DYF GD   D   K  QN  FLRADIKVFLQSN   KFTPRAIARIMHG+GSPA+P+S+WS+THFWGRY+ +DF+ +M AA+ EL NFV ++A
Sbjct:  767 KWLTEIESCKVRKLDIMSSAAVAAISVSNTSELSSGAKQTRSLQSRIFDYFNGDEKCDSPSKATQNCAFLRADIKVFLQSNRQAKFTPRAIARIMHGVGSPAFPNSVWSKTHFWGRYMNVDFRVIMEAAQTELFNFVDRNA 907          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Match: RECQ4_HUMAN (ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.398e-10
Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 2
Query:  209 LRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRT-HFWGRYIQIDFKAVMNAAKAELM 403
            +R DI+ FL      KF+ RA+ARI HGIGSP YP+ ++ +   FW +Y+ + F A++  A  EL+
Sbjct: 1139 VRCDIRQFLSLRPEEKFSSRAVARIFHGIGSPCYPAQVYGQDRRFWRKYLHLSFHALVGLATEELL 1204          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Match: RECQ4_MOUSE (ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 1.510e-9
Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 2
Query:  209 LRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWS-RTHFWGRYIQIDFKAVMNAAKAELM 403
            +R D++  L      +F+ RA+ARI HGI SP YP+ ++     FW +Y+ +DF A+M+ A  EL+
Sbjct: 1147 IRRDVRQLLSLRPEERFSGRAVARIFHGIASPCYPAQVYGLDRRFWRKYLHLDFHALMHLATEELL 1212          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2MCZ8_GOSRA2.780e-8995.77Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QFF9_GOSRA5.660e-8995.77Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061E749_THECC3.165e-7881.51DEAD/DEAH box RNA helicase family protein isoform ... [more]
A0A061EEY2_THECC8.795e-7882.39DEAD/DEAH box RNA helicase family protein isoform ... [more]
V4VFR2_9ROSI2.656e-6471.43Uncharacterized protein OS=Citrus clementina GN=CI... [more]
D7TAN9_VITVI1.512e-6270.92Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A061E794_THECC2.976e-6069.12DEAD/DEAH box RNA helicase family protein isoform ... [more]
B9HTB0_POPTR7.593e-6068.79ATP-dependent DNA helicase family protein OS=Popul... [more]
A0A067K3E5_JATCU7.704e-6066.67Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
K7KQ98_SOYBN1.282e-5963.57Uncharacterized protein OS=Glycine max PE=4 SV=1[more]

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BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RQL5_ARATH2.906e-5058.87ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis... [more]
RECQ4_HUMAN1.398e-1042.42ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=R... [more]
RECQ4_MOUSE1.510e-939.39ATP-dependent DNA helicase Q4 OS=Mus musculus GN=R... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR13710DNA HELICASE RECQ FAMILY MEMBERcoord: 2..137
NoneNo IPR availablePANTHERPTHR13710:SF76ATP-DEPENDENT DNA HELICASE Q4coord: 2..137

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019162 ID=g.arboreum_cottongen_reftransV1_0019162; Name=g.arboreum_cottongen_reftransV1_0019162; organism=Gossypium arboreum; type=contig; length=886bp
CAGATGGTTACTGGATATTGAAAATTGCAAGGTATGGAAATTGGATGCCA
TGTACAGTTCTGCAGTTTTTGCAGTGGATACATGTGAGAAGACACATGAT
TGCAATGTTGCTCAGCAGACAACATACTTGCAAGAGAGAATTTCGGATTA
TTTTAGGGGGGACAATAACCTTGACGTCCTTGATAAGATGGGTCAGAACA
GCCCTTTTCTTCGAGCAGATATAAAGGTCTTTCTGCAGAGCAACTCAAAT
GTCAAGTTTACTCCAAGAGCTATTGCAAGGATAATGCATGGAATTGGAAG
CCCAGCGTATCCTTCTTCAATTTGGTCAAGAACTCATTTCTGGGGAAGGT
ATATACAAATAGATTTCAAGGCGGTAATGAATGCAGCAAAGGCAGAACTC
ATGAATTTTGTTGGGAAAGATGCACCTTAGATCTTTGCCTCATGGACGAT
ATGCAAGCAACTTTATTTGAGAGCCATATCAAGAAGTTGGTTTGCAGAGT
AGAGAAAACATGATAAAAATGCAGTCGCATGTGTAATTTATATGACAGGT
CAAGGAACAGCTGCATATCTAAAATGAATTAGGGCTTTGAACTTCCAAAG
GATACTAGGAATGCAAATAGTTACTATATTGCAAACAAGCATGCGGCATG
ATGAACTTGTCCCTTTGCTCCCTGCATAACATTTACGGGAGGCAATGCCA
TTTGCAATTTTTCATGCATGATGGTCAGCATGTTTACTATTTGCAATTTA
GCCTATTTTATTTGGCTCCAAGAATGGACATGACTCATGAGTGATCCTTT
CCCTTTTATGGTCTATGACATTTCCGCCCATTGTTGTCTTCCAAGTTACA
ACAACGATGAATTGATAGTAAATTTTAAACTTAGGG
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