g.arboreum_cottongen_reftransV1_0019162, g.arboreum_cottongen_reftransV1_0019162 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A0D2MCZ8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G190800 PE=4 SV=1) HSP 1 Score: 296.975 bits (759), Expect = 2.780e-89 Identity = 136/142 (95.77%), Postives = 138/142 (97.18%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDAP 427 RWLLDIENCKVWKLDAMYSSAVF VDTCEKTHDCNVAQQTT LQERI DYF+GD+NLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSS WSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDAP Sbjct: 820 RWLLDIENCKVWKLDAMYSSAVFVVDTCEKTHDCNVAQQTTCLQERILDYFKGDSNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSTWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDAP 961
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A0D2QFF9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G190800 PE=4 SV=1) HSP 1 Score: 296.59 bits (758), Expect = 5.660e-89 Identity = 136/142 (95.77%), Postives = 138/142 (97.18%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDAP 427 RWLLDIENCKVWKLDAMYSSAVF VDTCEKTHDCNVAQQTT LQERI DYF+GD+NLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSS WSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDAP Sbjct: 838 RWLLDIENCKVWKLDAMYSSAVFVVDTCEKTHDCNVAQQTTCLQERILDYFKGDSNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSTWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDAP 979
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A061E749_THECC (DEAD/DEAH box RNA helicase family protein isoform 2 OS=Theobroma cacao GN=TCM_010767 PE=4 SV=1) HSP 1 Score: 266.544 bits (680), Expect = 3.165e-78 Identity = 119/146 (81.51%), Postives = 133/146 (91.10%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDAP*IFA 439 RWLLDIENCKVWKLD +YS+ VFAVD CEK H CNV+QQT+ LQ+R+ DYF+GDNN DVLDKM NSPFLRADIKVFLQSNS++KFTPRA+ARIMHGIGSPAYPSS WS++HFWGRY QIDFKAVMNAAKAELM+FVGKDAP +FA Sbjct: 781 RWLLDIENCKVWKLDTVYSAVVFAVDACEKAHGCNVSQQTSCLQQRVLDYFKGDNNPDVLDKMTHNSPFLRADIKVFLQSNSHIKFTPRAVARIMHGIGSPAYPSSTWSKSHFWGRYTQIDFKAVMNAAKAELMSFVGKDAP-LFA 925
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A061EEY2_THECC (DEAD/DEAH box RNA helicase family protein isoform 1 OS=Theobroma cacao GN=TCM_010767 PE=4 SV=1) HSP 1 Score: 266.544 bits (680), Expect = 8.795e-78 Identity = 117/142 (82.39%), Postives = 130/142 (91.55%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDAP 427 RWLLDIENCKVWKLD +YS+ VFAVD CEK H CNV+QQT+ LQ+R+ DYF+GDNN DVLDKM NSPFLRADIKVFLQSNS++KFTPRA+ARIMHGIGSPAYPSS WS++HFWGRY QIDFKAVMNAAKAELM+FVGKDAP Sbjct: 781 RWLLDIENCKVWKLDTVYSAVVFAVDACEKAHGCNVSQQTSCLQQRVLDYFKGDNNPDVLDKMTHNSPFLRADIKVFLQSNSHIKFTPRAVARIMHGIGSPAYPSSTWSKSHFWGRYTQIDFKAVMNAAKAELMSFVGKDAP 922
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: V4VFR2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030662mg PE=4 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 2.656e-64 Identity = 100/140 (71.43%), Postives = 119/140 (85.00%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKD 421 +WL ++ENCKV KLD M+ +AVFAVD CEKTH CN + T LQ+ I DYFRGD+N DV +K+GQ+SPFLRADIKVFLQSN N KFTPRA+ARI+HGI SPAYPS+IWS+THFWGRY+QI+F+ VM AAKAEL+NF GKD Sbjct: 753 KWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHFWGRYVQINFQVVMEAAKAELLNFAGKD 892
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: D7TAN9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g02590 PE=4 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 1.512e-62 Identity = 100/141 (70.92%), Postives = 117/141 (82.98%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424 +WL ++E+CKV KLD M+++AV AV+ CEK C AQ T LQ +ISDYF GD N D+ +KM Q+SPFLRADIKVFLQSNS VKFTPRA+ARIMHGI SPAYPS+ WSRTHFWGRY+Q+DF+ VM AAKAELMNFVGKDA Sbjct: 547 KWLSEVESCKVQKLDTMFNAAVSAVELCEKKCGCLGAQHTPCLQRKISDYFSGDGNGDIPNKMDQSSPFLRADIKVFLQSNSQVKFTPRAVARIMHGIASPAYPSATWSRTHFWGRYMQMDFQVVMKAAKAELMNFVGKDA 687
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A061E794_THECC (DEAD/DEAH box RNA helicase family protein isoform 3 OS=Theobroma cacao GN=TCM_010767 PE=4 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 2.976e-60 Identity = 94/136 (69.12%), Postives = 111/136 (81.62%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNF 409 RWLLDIENCKVWKLD +YS+ VFAVD CEK H CNV+QQT+ LQ+R+ DYF+GDNN DVLDKM NSPFLRADIKVFLQSNS++KFTPRA+ARIMHGIGSPAYPSS WS++HFWG+ F++ ++ F Sbjct: 781 RWLLDIENCKVWKLDTVYSAVVFAVDACEKAHGCNVSQQTSCLQQRVLDYFKGDNNPDVLDKMTHNSPFLRADIKVFLQSNSHIKFTPRAVARIMHGIGSPAYPSSTWSKSHFWGKVYTDRFQSSYECSEGRTYEF 916 HSP 2 Score: 63.929 bits (154), Expect = 4.400e-8 Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1 Query: 328 KNSFLGKVYTNRFQGGNECSKGRTHEFCWERCTLDLCLM 444 K+ F GKVYT+RFQ ECS+GRT+EFCWERCT +CL+ Sbjct: 890 KSHFWGKVYTDRFQSSYECSEGRTYEFCWERCTF-VCLV 927
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: B9HTB0_POPTR (ATP-dependent DNA helicase family protein OS=Populus trichocarpa GN=POPTR_0010s06660g PE=4 SV=2) HSP 1 Score: 214.927 bits (546), Expect = 7.593e-60 Identity = 97/141 (68.79%), Postives = 113/141 (80.14%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424 +WLL++E KV KLDAM+++A+FAV+ CEK C+ Q T LQ +I DYF+ D D+ +KMGQ+SPFLRADIKVFLQ NS KFTPRAIARIMHGI SPAYPS+ WSRTHFWGRY QIDF+ VM AAK ELMNFVGKDA Sbjct: 780 KWLLEVECFKVQKLDAMFNAAIFAVNDCEKMQGCHGTQHTPCLQRKILDYFKDDGRRDIPNKMGQSSPFLRADIKVFLQGNSQAKFTPRAIARIMHGIASPAYPSATWSRTHFWGRYTQIDFQVVMEAAKVELMNFVGKDA 920
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A067K3E5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17918 PE=4 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 7.704e-60 Identity = 94/141 (66.67%), Postives = 112/141 (79.43%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424 RWL +IE+ KV KLDAM+++A FAV+ CEK CN A T LQ +I DYF+ D D+L+KM Q+SPFLRAD+KVFLQSNS+ KFTPRAIARIMHGI SPAYPS+ WS++HFWGRY IDF VM AA+ ELMNFVGK+A Sbjct: 218 RWLSEIESYKVRKLDAMFNAAAFAVNDCEKMQGCNDAHHTPCLQRKIMDYFKEDGTHDILNKMCQSSPFLRADVKVFLQSNSHAKFTPRAIARIMHGIPSPAYPSTTWSKSHFWGRYTHIDFPVVMEAARTELMNFVGKEA 358
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: K7KQ98_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 1.282e-59 Identity = 89/140 (63.57%), Postives = 109/140 (77.86%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKD 421 RWL ++ENCKV K+DAM+++A FA++ C+ C A T LQ +I DYF G +N D K+GQ+SPFLRAD+KVFLQSNS+ +FTPRA+AR+MHGI SPAYPS+ WS+THFWGRY IDFK VM AAK EL NFVGKD Sbjct: 50 RWLSEVENCKVRKMDAMFNAAYFALNLCDNMQGCGGANHTPCLQRKILDYFSGVDNADFCKKIGQSSPFLRADLKVFLQSNSHARFTPRAVARVMHGIASPAYPSTAWSKTHFWGRYTHIDFKEVMEAAKEELKNFVGKD 189
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Match: RQL5_ARATH (ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana GN=RECQL5 PE=2 SV=2) HSP 1 Score: 182.956 bits (463), Expect = 2.906e-50 Identity = 83/141 (58.87%), Postives = 103/141 (73.05%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424 +WL +IE+CKV KLD M S+AV A+ + + A+QT LQ RI DYF GD D K QN FLRADIKVFLQSN KFTPRAIARIMHG+GSPA+P+S+WS+THFWGRY+ +DF+ +M AA+ EL NFV ++A Sbjct: 767 KWLTEIESCKVRKLDIMSSAAVAAISVSNTSELSSGAKQTRSLQSRIFDYFNGDEKCDSPSKATQNCAFLRADIKVFLQSNRQAKFTPRAIARIMHGVGSPAFPNSVWSKTHFWGRYMNVDFRVIMEAAQTELFNFVDRNA 907
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Match: RECQ4_HUMAN (ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 1.398e-10 Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 2 Query: 209 LRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRT-HFWGRYIQIDFKAVMNAAKAELM 403 +R DI+ FL KF+ RA+ARI HGIGSP YP+ ++ + FW +Y+ + F A++ A EL+ Sbjct: 1139 VRCDIRQFLSLRPEEKFSSRAVARIFHGIGSPCYPAQVYGQDRRFWRKYLHLSFHALVGLATEELL 1204
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Match: RECQ4_MOUSE (ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2) HSP 1 Score: 62.3882 bits (150), Expect = 1.510e-9 Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 2 Query: 209 LRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWS-RTHFWGRYIQIDFKAVMNAAKAELM 403 +R D++ L +F+ RA+ARI HGI SP YP+ ++ FW +Y+ +DF A+M+ A EL+ Sbjct: 1147 IRRDVRQLLSLRPEERFSGRAVARIFHGIASPCYPAQVYGLDRRFWRKYLHLDFHALMHLATEELL 1212 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 3
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0019162 ID=g.arboreum_cottongen_reftransV1_0019162; Name=g.arboreum_cottongen_reftransV1_0019162; organism=Gossypium arboreum; type=contig; length=886bpback to top |