g.arboreum_cottongen_reftransV1_0020674, g.arboreum_cottongen_reftransV1_0020674 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0020674
Unique Nameg.arboreum_cottongen_reftransV1_0020674
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length777
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr8chromosomeg.arboreum_cottongen_reftransV1_0020674:1..777 .
Chr8:4792314..4793713 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: A0A0B0MU63_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_26668 PE=4 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.818e-24
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 3
Query:   99 RSEPSGEFAIRSVYKLLQAETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVWVLNICSTW 428
            R E +GE+++RS YK L          +LQ   + F +RLW+L LPSKI+IT+WR S N++P+ SNL++KRL     C RC  G ET  H+FR CPVA E+ +   C+ W
Sbjct:   39 RGESTGEYSVRSGYKYLHE-----GQNQLQINYKQFYKRLWNLELPSKIKITIWRCSRNYLPNYSNLHYKRLMGLATCRRCHTGAETREHLFRDCPVAKEMMI--TCALW 141          
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: M5XIV5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025799mg PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.583e-11
Identity = 43/154 (27.92%), Postives = 78/154 (50.65%), Query Frame = 3
Query:   57 IPLAKILHDDELV*RSEPSGEFAIRSVYKLLQAETYDPNLEELQTTI--RMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVAS-----------EVW--VLNICSTWQCRISCLTLWDLWTE 473
            IPLA I  +D+L+   + SG+++++S Y +   +    N  E  +T    +  ++LW L + +KI+  +WR    F+PS  NLY +++  + ICPRC   VE++ H    C  ++           E+W  V+ + S  +  +     WD+W +
Sbjct:  644 IPLASIHREDKLICHYDRSGKYSVKSGYMVACMKKQRENGMEGSSTQDGTLLWKKLWRLQVLNKIKFFLWRCIWGFLPSRQNLYHRKILNSPICPRCGKKVESINHAIWACNESANRHEWRITSFKELWQSVIVVSSKEEVDLFAFLCWDIWND 797          
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: M5W5F3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026368mg PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.602e-11
Identity = 40/132 (30.30%), Postives = 71/132 (53.79%), Query Frame = 3
Query:   57 IPLAKILHDDELV*RSEPSGEFAIRSVYKLLQAETYDPNLEELQTTIRM---FCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVWV----LNICSTWQ 431
            IPLA +   D L+   E +G ++++S Y+L   E  D    E    + +   F +++W+L +P+KI+  +WR + +F+P    L+ ++++ T ICP+C    E++ H    C  A EVW      N+C  W+
Sbjct:  693 IPLASLAGHDCLIWHYERNGMYSVKSGYRLAGLEK-DKMSGEPSARVDLNSKFWKKIWALKIPNKIKFFLWRCAWDFLPCGQILFNRKIAPTPICPKCHRKAESVLHAVWLCEAAKEVWRNSAWGNVCEVWR 823          
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: S8BT41_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_17254 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.272e-11
Identity = 39/124 (31.45%), Postives = 57/124 (45.97%), Query Frame = 3
Query:   57 IPLAKILHDDELV*RSEPSGEFAIRSVYKLLQ--AETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVWVLNICS 422
            IPLAK  + D L+      G + I++ Y +L+  AE   P+         +F + LW L LP++I    WR   N +P   NL  +++     C  C  G ET  H F  CP +  VW +   S
Sbjct:   37 IPLAKNAYPDRLIWHFSNHGNYTIKTGYNMLKGRAEMSRPSPSNTNNGRSLFWQSLWKLKLPTRILTFGWRFGKNILPLKDNLTRRKICLDATCEICGGGRETWFHAFISCPFSQAVWRMGGTS 160          
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: C5WWX8_SORBI (Putative uncharacterized protein Sb01g046340 OS=Sorghum bicolor GN=Sb01g046340 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.087e-10
Identity = 33/103 (32.04%), Postives = 59/103 (57.28%), Query Frame = 3
Query:  102 SEPSGEFAIRSVYKLLQAETY--DPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVW 404
            SE +G +++RS YKLL  + +  + NL    +++ ++ + LW L +P K+R+  WR++N+F+P+   L+ K +     C  C D  E++ HV   C +A   W
Sbjct:  924 SEKTGVYSVRSAYKLLYNKKFGWNQNLAPGSSSVGLW-KMLWKLQVPPKVRVFWWRVANDFLPARQVLFKKHIEPVAFCEDCGDPEESIRHVLVDCSIARIFW 1025          
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: O82276_ARATH (Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g31080 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.854e-10
Identity = 36/110 (32.73%), Postives = 52/110 (47.27%), Query Frame = 3
Query:   78 HDDELV*RSEPSGEFAIRSVYKLLQAETYD-PNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVW 404
            + DE+  +    G F +RS Y LLQ +  D PN+         F  R+W L  P ++R+ +W +S N I +      + LS   IC  C    ET+ HV R CP    +W
Sbjct:  866 NGDEISWKGTQDGAFTVRSAYSLLQGDVGDRPNMGS-------FFNRIWKLITPERVRVFIWLVSQNVIMTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIW 968          
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: S8DHS4_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_15915 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.001e-10
Identity = 39/124 (31.45%), Postives = 56/124 (45.16%), Query Frame = 3
Query:   57 IPLAKILHDDELV*RSEPSGEFAIRSVYKLLQA--ETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVWVLNICS 422
            IPLAK  + D L+      G +  ++ Y LL+   E   P+     T   +F + LW + LP +I    WR   N +P   NL  +++     C  C +G ET  H F  CP +  VW L   S
Sbjct:   21 IPLAKNAYPDRLIWHFSNHGNYTTKTGYNLLKGRDEMSRPSSSNTNTGCNLFWQSLWKVKLPVRILTFGWRFGKNILPLKDNLTRRKICLDSTCEICGEGRETWFHAFISCPFSQAVWRLGGTS 144          
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: A2Q2Z7_MEDTR (Contains similarity to reverse trancriptase , related OS=Medicago truncatula GN=MtrDRAFT_AC153128g16v2 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.664e-10
Identity = 36/123 (29.27%), Postives = 66/123 (53.66%), Query Frame = 3
Query:   57 IPLAKILHDDELV*RSEPSGEFAIRSVYKLLQA-ETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVWVL-NIC 419
            IPL    + D L+    P+G ++++S Y  L+  +T   N     +   +  +++WSL+   + ++ +WRI N+ +P  S+L  + +    +CPRC    ET+ H+F  CP++  VW   N+C
Sbjct:  272 IPLVNTTNPDSLMWMHNPTGIYSVKSGYNTLRTWQTQQINNTSTSSDETLIWKKIWSLHTIPRHKVLLWRILNDSLPVRSSLRKRGIQCYPLCPRCHSKTETITHLFMSCPLSKRVWFGSNLC 394          
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: A0A0B2Q742_GLYSO (Putative ribonuclease H protein OS=Glycine soja GN=glysoja_026984 PE=4 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.725e-10
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 3
Query:   84 DELV*RSEPSGEFAIRSVYKLLQAETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLS-RTVICPRCRDGVETLAHVFRGCPVASEVW 404
            D+ V +++PSG++  +S Y +L  E +    EE Q  +      LW L LPSKI I  WR+  + +P+ SNL  K++      CP CR   E+ AH+F  C   + VW
Sbjct:   72 DQWVWKADPSGQYTAKSAYGVLWGEMF----EEQQDGV---FEELWKLKLPSKITIFAWRLIRDRLPTRSNLRRKQIEVDDPRCPFCRSAEESAAHLFFHCSRIAPVW 172          
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: A0A068F472_BRANA (Uncharacterized protein OS=Brassica napus PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.484e-9
Identity = 38/120 (31.67%), Postives = 65/120 (54.17%), Query Frame = 3
Query:  111 SGEFAIRSVYKLLQAETYD-PNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKR--LSRTVICPRCRDGVETLAHVFRGCPVASEVWVLNICSTWQCRISCLTLWD 461
             G F++++ Y  L  +    PN+E+L +       R+W +  P ++R+ +W +++  I  M+N+  KR  +S    CP C+ G ET+ HV R CP A+ +W   +  T Q R   LTL++
Sbjct:  262 DGLFSVKAAYAFLTKDAVPRPNMEDLYS-------RVWRVTAPERVRVFLWLVTHQVI--MTNMERKRRHISENGTCPLCKSGDETILHVLRDCPAAAGLWRKLVLPTRQQRFFNLTLFE 372          
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 5.730e-10
Identity = 36/141 (25.53%), Postives = 65/141 (46.10%), Query Frame = 3
Query:   84 DELV*RSEPSGEFAIRSVYKLLQA-ETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVWVLNICSTWQCRISCLTLWDLWTEEFCPEIRCED 503
            D L  +    G+F++RS Y++L   E   PN+         F   LW + +P +++  +W + N  + +    + + LS + +C  C+ GVE++ HV R CP    +WV  +    Q      +L++   +       CED
Sbjct:  253 DRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMAS-------FFNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFEWLYDNLGDRSGCED 386          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0MU63_GOSAR3.818e-2445.45Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
M5XIV5_PRUPE2.583e-1127.92Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
M5W5F3_PRUPE7.602e-1130.30Uncharacterized protein (Fragment) OS=Prunus persi... [more]
S8BT41_9LAMI9.272e-1131.45Uncharacterized protein OS=Genlisea aurea GN=M569_... [more]
C5WWX8_SORBI1.087e-1032.04Putative uncharacterized protein Sb01g046340 OS=So... [more]
O82276_ARATH1.854e-1032.73Putative non-LTR retroelement reverse transcriptas... [more]
S8DHS4_9LAMI2.001e-1031.45Uncharacterized protein (Fragment) OS=Genlisea aur... [more]
A2Q2Z7_MEDTR4.664e-1029.27Contains similarity to reverse trancriptase , rela... [more]
A0A0B2Q742_GLYSO6.725e-1036.11Putative ribonuclease H protein OS=Glycine soja GN... [more]
A0A068F472_BRANA1.484e-931.67Uncharacterized protein OS=Brassica napus PE=4 SV=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RNHX1_ARATH5.730e-1025.53Putative ribonuclease H protein At1g65750 OS=Arabi... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 3..68
e-value: 1.2E-12
score: 48.3
NoneNo IPR availablePANTHERPTHR33033FAMILY NOT NAMEDcoord: 7..70

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0020674 ID=g.arboreum_cottongen_reftransV1_0020674; Name=g.arboreum_cottongen_reftransV1_0020674; organism=Gossypium arboreum; type=contig; length=777bp
GAAGTGAGATTATTATTGATGTTTTTGATGCTGTTGATGATGCCAGGATT
CTCTGAATTCCGCTCGCAAAAATCCTGCATGATGATGAGCTGGTGTAGAG
AAGTGAACCTTCTGGAGAGTTCGCTATTAGAAGTGTCTATAAACTATTAC
AAGCTGAAACCTATGATCCTAATTTAGAGGAATTACAGACCACGATTAGA
ATGTTCTGTCGAAGACTATGGAGCCTTAATCTACCTTCTAAAATTAGAAT
TACAGTTTGGCGTATTTCAAACAATTTTATCCCATCTATGTCAAACTTGT
ATTTTAAAAGACTATCAAGGACTGTAATATGCCCTAGATGCAGGGATGGA
GTTGAAACCTTAGCGCATGTCTTTCGTGGTTGCCCTGTTGCCAGTGAAGT
CTGGGTTCTTAACATTTGTTCAACATGGCAGTGCCGAATTTCTTGTCTTA
CCCTTTGGGATCTGTGGACTGAGGAGTTCTGTCCCGAGATACGCTGTGAA
GATTCTAGTAGACAATTGGATTCGCGAACCTGATTGAGGCTTGTGGAAGA
GATCAAATTTTGAGTCCTTGTGTGAAAAAAAGGCTTTGCAGATCTGGTCT
TGAGGAAATAAAGCTTCTGGATGCAGGGATGGGAATTTGGAAATTTTTTG
GGAAATGGAAACCGATAGTCATTGGTGCCGACTTAAAGGATGGGACGGGT
AAGGGTTTTCCCTAGGCAACGAGCTATTTCTTTTTCTGTTTCTTTTTCGC
ATTAGGTTTAGGTTGTCTAGTCTTTTG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR026960RVT-Znf