g.arboreum_cottongen_reftransV1_0020674, g.arboreum_cottongen_reftransV1_0020674 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: A0A0B0MU63_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_26668 PE=4 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 3.818e-24 Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 3 Query: 99 RSEPSGEFAIRSVYKLLQAETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVWVLNICSTW 428 R E +GE+++RS YK L +LQ + F +RLW+L LPSKI+IT+WR S N++P+ SNL++KRL C RC G ET H+FR CPVA E+ + C+ W Sbjct: 39 RGESTGEYSVRSGYKYLHE-----GQNQLQINYKQFYKRLWNLELPSKIKITIWRCSRNYLPNYSNLHYKRLMGLATCRRCHTGAETREHLFRDCPVAKEMMI--TCALW 141
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: M5XIV5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025799mg PE=4 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.583e-11 Identity = 43/154 (27.92%), Postives = 78/154 (50.65%), Query Frame = 3 Query: 57 IPLAKILHDDELV*RSEPSGEFAIRSVYKLLQAETYDPNLEELQTTI--RMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVAS-----------EVW--VLNICSTWQCRISCLTLWDLWTE 473 IPLA I +D+L+ + SG+++++S Y + + N E +T + ++LW L + +KI+ +WR F+PS NLY +++ + ICPRC VE++ H C ++ E+W V+ + S + + WD+W + Sbjct: 644 IPLASIHREDKLICHYDRSGKYSVKSGYMVACMKKQRENGMEGSSTQDGTLLWKKLWRLQVLNKIKFFLWRCIWGFLPSRQNLYHRKILNSPICPRCGKKVESINHAIWACNESANRHEWRITSFKELWQSVIVVSSKEEVDLFAFLCWDIWND 797
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: M5W5F3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026368mg PE=4 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 7.602e-11 Identity = 40/132 (30.30%), Postives = 71/132 (53.79%), Query Frame = 3 Query: 57 IPLAKILHDDELV*RSEPSGEFAIRSVYKLLQAETYDPNLEELQTTIRM---FCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVWV----LNICSTWQ 431 IPLA + D L+ E +G ++++S Y+L E D E + + F +++W+L +P+KI+ +WR + +F+P L+ ++++ T ICP+C E++ H C A EVW N+C W+ Sbjct: 693 IPLASLAGHDCLIWHYERNGMYSVKSGYRLAGLEK-DKMSGEPSARVDLNSKFWKKIWALKIPNKIKFFLWRCAWDFLPCGQILFNRKIAPTPICPKCHRKAESVLHAVWLCEAAKEVWRNSAWGNVCEVWR 823
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: S8BT41_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_17254 PE=4 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.272e-11 Identity = 39/124 (31.45%), Postives = 57/124 (45.97%), Query Frame = 3 Query: 57 IPLAKILHDDELV*RSEPSGEFAIRSVYKLLQ--AETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVWVLNICS 422 IPLAK + D L+ G + I++ Y +L+ AE P+ +F + LW L LP++I WR N +P NL +++ C C G ET H F CP + VW + S Sbjct: 37 IPLAKNAYPDRLIWHFSNHGNYTIKTGYNMLKGRAEMSRPSPSNTNNGRSLFWQSLWKLKLPTRILTFGWRFGKNILPLKDNLTRRKICLDATCEICGGGRETWFHAFISCPFSQAVWRMGGTS 160
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: C5WWX8_SORBI (Putative uncharacterized protein Sb01g046340 OS=Sorghum bicolor GN=Sb01g046340 PE=4 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.087e-10 Identity = 33/103 (32.04%), Postives = 59/103 (57.28%), Query Frame = 3 Query: 102 SEPSGEFAIRSVYKLLQAETY--DPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVW 404 SE +G +++RS YKLL + + + NL +++ ++ + LW L +P K+R+ WR++N+F+P+ L+ K + C C D E++ HV C +A W Sbjct: 924 SEKTGVYSVRSAYKLLYNKKFGWNQNLAPGSSSVGLW-KMLWKLQVPPKVRVFWWRVANDFLPARQVLFKKHIEPVAFCEDCGDPEESIRHVLVDCSIARIFW 1025
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: O82276_ARATH (Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g31080 PE=4 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.854e-10 Identity = 36/110 (32.73%), Postives = 52/110 (47.27%), Query Frame = 3 Query: 78 HDDELV*RSEPSGEFAIRSVYKLLQAETYD-PNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVW 404 + DE+ + G F +RS Y LLQ + D PN+ F R+W L P ++R+ +W +S N I + + LS IC C ET+ HV R CP +W Sbjct: 866 NGDEISWKGTQDGAFTVRSAYSLLQGDVGDRPNMGS-------FFNRIWKLITPERVRVFIWLVSQNVIMTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIW 968
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: S8DHS4_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_15915 PE=4 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.001e-10 Identity = 39/124 (31.45%), Postives = 56/124 (45.16%), Query Frame = 3 Query: 57 IPLAKILHDDELV*RSEPSGEFAIRSVYKLLQA--ETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVWVLNICS 422 IPLAK + D L+ G + ++ Y LL+ E P+ T +F + LW + LP +I WR N +P NL +++ C C +G ET H F CP + VW L S Sbjct: 21 IPLAKNAYPDRLIWHFSNHGNYTTKTGYNLLKGRDEMSRPSSSNTNTGCNLFWQSLWKVKLPVRILTFGWRFGKNILPLKDNLTRRKICLDSTCEICGEGRETWFHAFISCPFSQAVWRLGGTS 144
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: A2Q2Z7_MEDTR (Contains similarity to reverse trancriptase , related OS=Medicago truncatula GN=MtrDRAFT_AC153128g16v2 PE=4 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.664e-10 Identity = 36/123 (29.27%), Postives = 66/123 (53.66%), Query Frame = 3 Query: 57 IPLAKILHDDELV*RSEPSGEFAIRSVYKLLQA-ETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVWVL-NIC 419 IPL + D L+ P+G ++++S Y L+ +T N + + +++WSL+ + ++ +WRI N+ +P S+L + + +CPRC ET+ H+F CP++ VW N+C Sbjct: 272 IPLVNTTNPDSLMWMHNPTGIYSVKSGYNTLRTWQTQQINNTSTSSDETLIWKKIWSLHTIPRHKVLLWRILNDSLPVRSSLRKRGIQCYPLCPRCHSKTETITHLFMSCPLSKRVWFGSNLC 394
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: A0A0B2Q742_GLYSO (Putative ribonuclease H protein OS=Glycine soja GN=glysoja_026984 PE=4 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 6.725e-10 Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 3 Query: 84 DELV*RSEPSGEFAIRSVYKLLQAETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLS-RTVICPRCRDGVETLAHVFRGCPVASEVW 404 D+ V +++PSG++ +S Y +L E + EE Q + LW L LPSKI I WR+ + +P+ SNL K++ CP CR E+ AH+F C + VW Sbjct: 72 DQWVWKADPSGQYTAKSAYGVLWGEMF----EEQQDGV---FEELWKLKLPSKITIFAWRLIRDRLPTRSNLRRKQIEVDDPRCPFCRSAEESAAHLFFHCSRIAPVW 172
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: A0A068F472_BRANA (Uncharacterized protein OS=Brassica napus PE=4 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 1.484e-9 Identity = 38/120 (31.67%), Postives = 65/120 (54.17%), Query Frame = 3 Query: 111 SGEFAIRSVYKLLQAETYD-PNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKR--LSRTVICPRCRDGVETLAHVFRGCPVASEVWVLNICSTWQCRISCLTLWD 461 G F++++ Y L + PN+E+L + R+W + P ++R+ +W +++ I M+N+ KR +S CP C+ G ET+ HV R CP A+ +W + T Q R LTL++ Sbjct: 262 DGLFSVKAAYAFLTKDAVPRPNMEDLYS-------RVWRVTAPERVRVFLWLVTHQVI--MTNMERKRRHISENGTCPLCKSGDETILHVLRDCPAAAGLWRKLVLPTRQQRFFNLTLFE 372
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 5.730e-10 Identity = 36/141 (25.53%), Postives = 65/141 (46.10%), Query Frame = 3 Query: 84 DELV*RSEPSGEFAIRSVYKLLQA-ETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVWVLNICSTWQCRISCLTLWDLWTEEFCPEIRCED 503 D L + G+F++RS Y++L E PN+ F LW + +P +++ +W + N + + + + LS + +C C+ GVE++ HV R CP +WV + Q +L++ + CED Sbjct: 253 DRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMAS-------FFNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFEWLYDNLGDRSGCED 386 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0020674 ID=g.arboreum_cottongen_reftransV1_0020674; Name=g.arboreum_cottongen_reftransV1_0020674; organism=Gossypium arboreum; type=contig; length=777bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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