g.arboreum_cottongen_reftransV1_0013229, g.arboreum_cottongen_reftransV1_0013229 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A0D2S1W4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G121700 PE=4 SV=1) HSP 1 Score: 283.108 bits (723), Expect = 3.819e-91 Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 1 Query: 1 SDSLATVSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429 SDSLATVS+GPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQ+DVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT Sbjct: 11 SDSLATVSNGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQDDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 153
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A061E5J0_THECC (Glycine-rich protein, putative isoform 2 OS=Theobroma cacao GN=TCM_010013 PE=4 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 2.779e-71 Identity = 114/135 (84.44%), Postives = 123/135 (91.11%), Query Frame = 1 Query: 25 DGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429 +GPVL+ INKRLRALRKKYNRILQMEESVSQGK LNKEQE+VLRSKP VSALIDELEKLRQPLSSAVSEEISLALQ QT+ ET S+AQ D+TE QEQ PN PDHA+EDLLNLLYFGS+FDVKSQ+DFTSTMLT Sbjct: 20 EGPVLNLINKRLRALRKKYNRILQMEESVSQGKPLNKEQEEVLRSKPAVSALIDELEKLRQPLSSAVSEEISLALQCQTIFPDETASEAQQDETEVQEQQPNEPDHAVEDLLNLLYFGSIFDVKSQNDFTSTMLT 154
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A061E5E8_THECC (Glycine-rich protein, putative isoform 1 OS=Theobroma cacao GN=TCM_010013 PE=4 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 5.699e-70 Identity = 114/135 (84.44%), Postives = 123/135 (91.11%), Query Frame = 1 Query: 25 DGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429 +GPVL+ INKRLRALRKKYNRILQMEESVSQGK LNKEQE+VLRSKP VSALIDELEKLRQPLSSAVSEEISLALQ QT+ ET S+AQ D+TE QEQ PN PDHA+EDLLNLLYFGS+FDVKSQ+DFTSTMLT Sbjct: 20 EGPVLNLINKRLRALRKKYNRILQMEESVSQGKPLNKEQEEVLRSKPAVSALIDELEKLRQPLSSAVSEEISLALQCQTIFPDETASEAQQDETEVQEQQPNEPDHAVEDLLNLLYFGSIFDVKSQNDFTSTMLT 154
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A0D2QT66_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G346800 PE=4 SV=1) HSP 1 Score: 215.698 bits (548), Expect = 7.927e-66 Identity = 112/136 (82.35%), Postives = 121/136 (88.97%), Query Frame = 1 Query: 22 SDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429 SDGPVLS INKR+RALRKKYNRILQMEESVSQGK LNKEQE+VLRSKP+VSALIDELEKLR PLSSAVSEEISLALQRQT+S+ ETTS+AQ + P E PDHA+EDLLNLLYFGSLFDVKSQ+DFTS MLT Sbjct: 20 SDGPVLSLINKRIRALRKKYNRILQMEESVSQGKPLNKEQEEVLRSKPSVSALIDELEKLRHPLSSAVSEEISLALQRQTISAEETTSEAQQQQQPPSE-----PDHAVEDLLNLLYFGSLFDVKSQNDFTSMMLT 150
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A0D2U003_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G346800 PE=4 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 5.075e-65 Identity = 112/136 (82.35%), Postives = 121/136 (88.97%), Query Frame = 1 Query: 22 SDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429 SDGPVLS INKR+RALRKKYNRILQMEESVSQGK LNKEQE+VLRSKP+VSALIDELEKLR PLSSAVSEEISLALQRQT+S+ ETTS+AQ + P E PDHA+EDLLNLLYFGSLFDVKSQ+DFTS MLT Sbjct: 20 SDGPVLSLINKRIRALRKKYNRILQMEESVSQGKPLNKEQEEVLRSKPSVSALIDELEKLRHPLSSAVSEEISLALQRQTISAEETTSEAQQQQQPPSE-----PDHAVEDLLNLLYFGSLFDVKSQNDFTSMMLT 150
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: W9R1K2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021067 PE=4 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 3.466e-54 Identity = 97/138 (70.29%), Postives = 113/138 (81.88%), Query Frame = 1 Query: 19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSS-SETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429 VSDGPVLS INKRLRALRKK NRI QMEE++SQGK +N+EQE+VLRSKP VSALIDELEKLRQP++ AV+EE+SLA+Q VSS S+ Q +PD+ E P+ + +EDLLNLLYFGSLFDVK QSDFTSTMLT Sbjct: 6 VSDGPVLSLINKRLRALRKKLNRITQMEEAISQGKPINREQEEVLRSKPGVSALIDELEKLRQPIADAVAEEVSLAVQLHQVSSLSDADRQEKPDEPETAVPEPDRREAEVEDLLNLLYFGSLFDVKPQSDFTSTMLT 143
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A0A0KVT4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604160 PE=4 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 1.220e-53 Identity = 102/142 (71.83%), Postives = 115/142 (80.99%), Query Frame = 1 Query: 19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQ-EQLPNVPD---HA-IEDLLNLLYFGSLFDVKSQSDFTSTMLT 429 V DGPVLS INKRLRALRKK+NRILQMEE++S GK +NKEQE+VLRSKP+V+ALIDELEKLRQPL+SAVSEEI+LA+QRQ S S TE + E +V D HA +EDLLNLLYFGSLFDVKSQSDFTSTMLT Sbjct: 9 VIDGPVLSLINKRLRALRKKHNRILQMEEAISLGKPINKEQEEVLRSKPSVTALIDELEKLRQPLASAVSEEINLAVQRQQASVSSLPVSTDDSHTEVRDEDTSDVKDQSEHAVVEDLLNLLYFGSLFDVKSQSDFTSTMLT 150
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A067JES6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21714 PE=4 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 2.634e-53 Identity = 96/144 (66.67%), Postives = 113/144 (78.47%), Query Frame = 1 Query: 19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQ-------EQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429 +DGPVLSFINKRLRALRKKYNRILQMEE++SQGK +NKEQEDVLRSKP+V A I+ELEKLRQPL++AVSEEI+LA+QR S ++ A PDK + + E +EDLLNLLYFGSLFDVKSQ+DFT+TMLT Sbjct: 9 ATDGPVLSFINKRLRALRKKYNRILQMEEAISQGKPINKEQEDVLRSKPSVCAAIEELEKLRQPLATAVSEEIALAIQRHQ-QQSFVSNNAIPDKDDSEKTDCDSDEDTRGDGGSMVEDLLNLLYFGSLFDVKSQNDFTATMLT 151
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: Q9LFX8_ARATH (Putative uncharacterized protein At1g27090 OS=Arabidopsis thaliana GN=At1g27090 PE=1 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 3.027e-52 Identity = 92/138 (66.67%), Postives = 110/138 (79.71%), Query Frame = 1 Query: 19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHA-IEDLLNLLYFGSLFDVKSQSDFTSTMLT 429 S+GPV+ INKRLRALRKKYNRI QMEES+SQGKTLNKEQE+VLRSKP V LIDELEK+R PLS+AV+EEISLA Q SS +TT+ Q + T+ +++ D A +EDL+N LYFGSLFDVKSQ++FTS MLT Sbjct: 9 ASEGPVMGLINKRLRALRKKYNRITQMEESISQGKTLNKEQEEVLRSKPAVVILIDELEKIRAPLSAAVTEEISLATQLNRASSDQTTASEQKEVTDIPQEVSGGDDGAKLEDLVNFLYFGSLFDVKSQNEFTSIMLT 146
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: D7KPK8_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_472693 PE=4 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 2.756e-51 Identity = 92/138 (66.67%), Postives = 108/138 (78.26%), Query Frame = 1 Query: 19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTE-PQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429 S+GPV+ INKRLRALRKKYNRI QMEES+SQGKTLNKEQE+VLRSKP V LI+ELEK+R PLS+AV+EEISLA Q S +TT+ Q + T+ PQE +EDL+NLLYFGSLFDVKSQ++FTS MLT Sbjct: 9 ASEGPVMGLINKRLRALRKKYNRITQMEESISQGKTLNKEQEEVLRSKPAVVILIEELEKIRAPLSAAVAEEISLATQHNRAPSDQTTAPEQKEVTDIPQEVSGGDGGAKLEDLVNLLYFGSLFDVKSQNEFTSIMLT 146 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0013229 ID=g.arboreum_cottongen_reftransV1_0013229; Name=g.arboreum_cottongen_reftransV1_0013229; organism=Gossypium arboreum; type=contig; length=429bpback to top |