g.arboreum_cottongen_reftransV1_0014341, g.arboreum_cottongen_reftransV1_0014341 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0014341
Unique Nameg.arboreum_cottongen_reftransV1_0014341
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length538
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0014341:1..538 .
Chr11:15598755..15599292 -
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: A0A061GWI3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_041499 PE=4 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 4.099e-115
Identity = 160/178 (89.89%), Postives = 169/178 (94.94%), Query Frame = -3 
Query:    3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536
            GPEPVDGFYVLVMVDSEIGL+LGDMAEE V +KFK  TPVAKVSLI RQEHCSG TLYSTKAQFCDTGIVHD+LI+CSGEHEGLK+PVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWD +DWFFNP TGSAVF+FRTRSGLDSRLWLEEKLVQK QDRVEFSLLI+ACK+
Sbjct:  121 GPEPVDGFYVLVMVDSEIGLILGDMAEEAVIRKFKTTTPVAKVSLICRQEHCSGNTLYSTKAQFCDTGIVHDVLIKCSGEHEGLKHPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDVHDWFFNPATGSAVFMFRTRSGLDSRLWLEEKLVQKGQDRVEFSLLIYACKS 298
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: B9T5T5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1180700 PE=4 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 7.605e-108
Identity = 146/178 (82.02%), Postives = 165/178 (92.70%), Query Frame = -3 
Query:    3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536
            GP PVDGFYVLVMVDSEIGL+LGD+ +ET+ KK K  TPVAK SLISRQEHCSG TLY+TKAQFCD G+ H+ILI+CSGE+EGLKYPVLSVCIDKK VIRVKRLQWNFRGNQ+IF+DGLLVDLMWD +DWF+NP +GSAVF+FRTRSG+DSRLWLEEKL+QKDQ+RVEFSLLI+ACKN
Sbjct:  121 GPAPVDGFYVLVMVDSEIGLILGDIGDETINKKLKVTTPVAKTSLISRQEHCSGNTLYATKAQFCDKGMQHEILIKCSGENEGLKYPVLSVCIDKKMVIRVKRLQWNFRGNQSIFLDGLLVDLMWDVHDWFYNPASGSAVFMFRTRSGMDSRLWLEEKLLQKDQERVEFSLLIYACKN 298
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: B9MYJ2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s19910g PE=4 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.038e-106
Identity = 148/179 (82.68%), Postives = 171/179 (95.53%), Query Frame = -3 
Query:    3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFK-NATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536
            GPEPV+GFYVLVMVDSEIGL+LGD+ EET+TKKFK ++TP+AKV+LISRQEHCSG TLY+TKAQFCDTGI HDI+IRCSGE+EGLK+PVLSVCIDKKTVIRVKRLQWNFRGNQTIF++GLLVDL+WD +DWF+NP +G AVF+FRTRSG+DSRLWLEEKLVQKDQ+RVEFSLLI+A K+
Sbjct:  121 GPEPVEGFYVLVMVDSEIGLILGDVGEETLTKKFKTSSTPIAKVTLISRQEHCSGNTLYATKAQFCDTGIQHDIVIRCSGENEGLKHPVLSVCIDKKTVIRVKRLQWNFRGNQTIFLEGLLVDLLWDVHDWFYNPGSGYAVFMFRTRSGMDSRLWLEEKLVQKDQERVEFSLLIYASKS 299
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: A0A0D2LXR8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G120000 PE=4 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 2.384e-106
Identity = 152/178 (85.39%), Postives = 163/178 (91.57%), Query Frame = -3 
Query:    3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536
            GPEPV+GFYVLVMVDSEI LVLGD+ EETVT+KFK  TPVAKVSLISRQEHCSG TLYSTKAQF DTGIVHD+LIR  GE+EGLK+PVLSV IDKKTVIRVKRLQWNFRGNQTIFVDGL VDLMWD +DWFF PVTGSA+F+FRTRSG DSRLWLEEKL+QKDQDR  FSLLI+ACKN
Sbjct:   99 GPEPVNGFYVLVMVDSEISLVLGDIDEETVTRKFKKKTPVAKVSLISRQEHCSGNTLYSTKAQFSDTGIVHDVLIRFGGENEGLKHPVLSVYIDKKTVIRVKRLQWNFRGNQTIFVDGLSVDLMWDVHDWFFKPVTGSAIFMFRTRSGFDSRLWLEEKLLQKDQDRHGFSLLIYACKN 276
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: A0A067DRK5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021977mg PE=4 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 3.020e-106
Identity = 146/178 (82.02%), Postives = 165/178 (92.70%), Query Frame = -3 
Query:    3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536
            GPEPV+GFYVLVMVDSEIGL+LG++ E+ VTKK KN++  AKVSL+SR+EHCSG  LYSTKAQFCDTGI HDILIRC GE+EGLK+PVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWD +DWFFNP +G AVF+FRTRSGLDSRLWLEEKL+QK+Q+ VEFSLLI+ACK+
Sbjct:  123 GPEPVEGFYVLVMVDSEIGLILGNLNEDIVTKKLKNSSSAAKVSLVSRREHCSGNALYSTKAQFCDTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDVHDWFFNPASGYAVFMFRTRSGLDSRLWLEEKLMQKEQESVEFSLLIYACKS 300
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: F6GW46_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01360 PE=4 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 8.218e-106
Identity = 145/178 (81.46%), Postives = 164/178 (92.13%), Query Frame = -3 
Query:    3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536
            GPEPV+GFYVLV+VDSEIGL+LGD+AEE  T+K K+ TPVAK SL+SR+EHCSG TLYSTKAQFCDTG  HDILI+CSGE+EGLK+PVLSV IDKK VIRVKRLQWNFRGNQTIFVDGLLVDLMWD + WFFNP +G AVF+FRTRSG+DSRLWLEEKL+QKDQDR+EFSLLI+ACK+
Sbjct:  121 GPEPVEGFYVLVVVDSEIGLLLGDIAEEAATRKLKSGTPVAKASLVSRREHCSGNTLYSTKAQFCDTGTAHDILIKCSGENEGLKHPVLSVSIDKKVVIRVKRLQWNFRGNQTIFVDGLLVDLMWDVHGWFFNPASGYAVFMFRTRSGMDSRLWLEEKLLQKDQDRLEFSLLIYACKS 298
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: A0A0D2TG78_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G088000 PE=4 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 1.554e-104
Identity = 146/178 (82.02%), Postives = 159/178 (89.33%), Query Frame = -3 
Query:    3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536
            GPEPV+GFYV+V VDSEIGL+LGD AEE + K+F +  PVAK SL+SRQEHCSG TLYSTKAQFCDTGI HDILIRCSGEH  LK+PVLSVCID KTVIRVKRLQWNFRGNQTIFVDGLLVDLMWD +DWFFNP  GSAVF+FRTRSGLDSRLWLEEK V KD+D+VEFSLLI+A KN
Sbjct:  122 GPEPVNGFYVIVTVDSEIGLILGDTAEEEINKRFTSTIPVAKSSLVSRQEHCSGNTLYSTKAQFCDTGISHDILIRCSGEHGDLKHPVLSVCIDNKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDVHDWFFNPAAGSAVFMFRTRSGLDSRLWLEEKWVHKDEDKVEFSLLIYAWKN 299
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: A0A067KQ06_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11263 PE=4 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 3.963e-104
Identity = 144/179 (80.45%), Postives = 168/179 (93.85%), Query Frame = -3 
Query:    3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSG-TTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536
            GP PV+GFYVLVMVD+EIGLVLGD+  ET+TKK K +TPVAK SLIS+QEHCSG +TLY+TKAQFC+TGI+HDILI+CSGE+EGLKYPVLSVCID K VIRVKRLQWNFRGNQTIFVDGLLVDLMWD ++WF++P +GSAVF+FRTRSG+DSRLWLEEKLVQKD++R+EFSLLI+ACK+
Sbjct:  123 GPVPVEGFYVLVMVDNEIGLVLGDIEGETITKKLKTSTPVAKASLISKQEHCSGNSTLYATKAQFCETGILHDILIKCSGENEGLKYPVLSVCIDNKMVIRVKRLQWNFRGNQTIFVDGLLVDLMWDVHNWFYSPGSGSAVFMFRTRSGMDSRLWLEEKLVQKDEERIEFSLLIYACKS 301
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: A0A068UEI5_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_24 OS=Coffea canephora GN=GSCOC_T00024041001 PE=4 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 4.253e-103
Identity = 142/177 (80.23%), Postives = 160/177 (90.40%), Query Frame = -3 
Query:    6 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACK 536
            GPEP+DG+YVLV VDS++ L+LGDMAEE   KK K+ TPVAK SL+SRQEH SG TLYSTKAQFCDTG  HDILIRCSGE+EGLK+PVLSVCIDKK V RVKRLQWNFRGNQTIF+DGLLVDLMWD +DWFFNP +G AVF+FRTRSG+DSRLWLEEKLVQKDQD+V+FSLLI+AC+
Sbjct:  122 GPEPIDGYYVLVTVDSQLCLILGDMAEEASLKKLKSGTPVAKFSLVSRQEHFSGNTLYSTKAQFCDTGTCHDILIRCSGENEGLKHPVLSVCIDKKMVTRVKRLQWNFRGNQTIFLDGLLVDLMWDVHDWFFNPASGYAVFMFRTRSGMDSRLWLEEKLVQKDQDKVDFSLLIYACR 298
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: B9HQU0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s15050g PE=4 SV=2)

HSP 1 Score: 308.531 bits (789), Expect = 2.348e-102
Identity = 144/179 (80.45%), Postives = 168/179 (93.85%), Query Frame = -3 
Query:    3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFK-NATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536
            GPEPV+GFYVLVMVDSEIGL+LGD+ EET+TK+FK ++T VAKVSLISRQEHCSG T+Y+TKAQFC+TGI HDI+I+CSGE EGLK+PVLSV IDKKTVIRVKRLQWNFRGNQT+F+DGLLVDL+WD +DWFFNP +G AVF+FRTRSG+DSRLWLEEKLVQK+Q+RVEFSLLI+A K+
Sbjct:  121 GPEPVEGFYVLVMVDSEIGLILGDVGEETLTKRFKTSSTSVAKVSLISRQEHCSGNTIYATKAQFCETGIQHDIVIKCSGETEGLKHPVLSVYIDKKTVIRVKRLQWNFRGNQTVFLDGLLVDLLWDVHDWFFNPGSGYAVFMFRTRSGMDSRLWLEEKLVQKEQERVEFSLLIYASKS 299
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A061GWI3_THECC4.099e-11589.89Uncharacterized protein OS=Theobroma cacao GN=TCM_... [more]
B9T5T5_RICCO7.605e-10882.02Putative uncharacterized protein OS=Ricinus commun... [more]
B9MYJ2_POPTR1.038e-10682.68Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A0D2LXR8_GOSRA2.384e-10685.39Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A067DRK5_CITSI3.020e-10682.02Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
F6GW46_VITVI8.218e-10681.46Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A0D2TG78_GOSRA1.554e-10482.02Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A067KQ06_JATCU3.963e-10480.45Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A068UEI5_COFCA4.253e-10380.23Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
B9HQU0_POPTR2.348e-10280.45Uncharacterized protein OS=Populus trichocarpa GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008586Protein of unknown function DUF868, plantPFAMPF05910DUF868coord: 1..165
e-value: 7.7E-54
score: 183.0
NoneNo IPR availablePANTHERPTHR31972FAMILY NOT NAMEDcoord: 1..166
NoneNo IPR availablePANTHERPTHR31972:SF10SUBFAMILY NOT NAMEDcoord: 1..166

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0014341 ID=g.arboreum_cottongen_reftransV1_0014341; Name=g.arboreum_cottongen_reftransV1_0014341; organism=Gossypium arboreum; type=contig; length=538bp
GTGTTCTTACAGGCATGAATCAACAAGGAGAATTCAACTCTGTCTTGGTC
TTTCTGCACCAACTTCTCCTCCAACCAAAGCCGGCTATCCAAACCACTTC
TTGTCCTAAATAAGAACACAGCTGAACCAGTAACAGGATTGAAGAACCAG
TCATAGGCATCCCACATCAGATCAACTAACAATCCATCAACAAATATCGT
CTGGTTTCCTCTAAAATTCCATTGCAGCCTCTTTACTCGAATCACCGTCT
TCTTATCGATACAAACCGATAAAACCGGGTACTTCAGGCCTTCATGTTCA
CCACTGCATCTGATTAGAATATCATGTACAATGCCTGTATCACAGAATTG
AGCCTTCGTGGAATACAGCGTAGTGCCAGAACAATGTTCTTGCCTGGAAA
TGAGGGAGACTTTAGCAACTGGGGTTGCATTTTTGAACTTCTTGGTGACC
GTTTCTTCAGCCATATCGCCTAAAACAAGGCCTATCTCGGAATCAACCAT
GACTAAAACATAGAACCCATCAACAGGTTCGGGTCCCG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR008586DUF868_pln