g.arboreum_cottongen_reftransV1_0004586, g.arboreum_cottongen_reftransV1_0004586 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0004586
Unique Nameg.arboreum_cottongen_reftransV1_0004586
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length346
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0004586:1..346 .
Chr12:5733973..5734318 -
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: A0A0B0PJR3_GOSAR (Glutamyl-tRNA (Gln) amidotransferase subunit A OS=Gossypium arboreum GN=F383_08894 PE=4 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 2.203e-76
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM
Sbjct:  282 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 395
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BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: A0A0D2VZK7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G148500 PE=4 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.020e-75
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MFADARCIGEKNVNGEDCFILKLCT+PQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM
Sbjct:  282 MFADARCIGEKNVNGEDCFILKLCTEPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 395
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: A0A061E039_THECC (Soluble secretory phospholipase A2 receptor OS=Theobroma cacao GN=TCM_007179 PE=4 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 3.561e-74
Identity = 109/114 (95.61%), Postives = 113/114 (99.12%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MFADARCIGEK +NGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVH+EDSHLTRIQSNGGDAVYWETTI+SYLDDYRPVEGIMIAHSGRS+VTLFRFGEVAM
Sbjct:  281 MFADARCIGEKKINGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSNGGDAVYWETTINSYLDDYRPVEGIMIAHSGRSIVTLFRFGEVAM 394
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: A0A067LB46_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16291 PE=4 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.339e-72
Identity = 106/114 (92.98%), Postives = 113/114 (99.12%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MFADARCIGEKN+NGEDCFILKLC DPQTL+ARSEGPAEIIRHVLFGYFSQKTGLLVH+EDSHLTRIQSNGGDAVYWETTI+S+L+DYRPVEGIMIAHSGRSVVTL+RFGEVAM
Sbjct:  282 MFADARCIGEKNINGEDCFILKLCADPQTLQARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSNGGDAVYWETTINSFLEDYRPVEGIMIAHSGRSVVTLYRFGEVAM 395
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: A0A067F2X2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011695mg PE=4 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 2.770e-72
Identity = 107/114 (93.86%), Postives = 112/114 (98.25%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MFADARCIGEK +NGEDCFILKLC DPQTLKARSEGPAEIIRHVLFGYFSQKTGLLV++EDSHLTRIQSNGGDAVYWETTI+S+LDDYRPVEGIMIAHSGRSVVTLFRFGEVAM
Sbjct:  282 MFADARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 395
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: V4SB82_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028343mg PE=4 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 2.770e-72
Identity = 107/114 (93.86%), Postives = 112/114 (98.25%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MFADARCIGEK +NGEDCFILKLC DPQTLKARSEGPAEIIRHVLFGYFSQKTGLLV++EDSHLTRIQSNGGDAVYWETTI+S+LDDYRPVEGIMIAHSGRSVVTLFRFGEVAM
Sbjct:  282 MFADARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 395
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: A0A0B2S6M8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_020048 PE=4 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 4.939e-72
Identity = 105/114 (92.11%), Postives = 112/114 (98.25%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MFADA+CIGEKN+NGEDCFILKLCTDP+TLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTI+S+L DY+PVEGIMIAHSG SVVTLFRFGE+AM
Sbjct:  175 MFADAKCIGEKNINGEDCFILKLCTDPETLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTINSFLSDYKPVEGIMIAHSGHSVVTLFRFGEMAM 288
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: A0A068TMU3_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_1 OS=Coffea canephora GN=GSCOC_T00014521001 PE=4 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.512e-72
Identity = 106/114 (92.98%), Postives = 112/114 (98.25%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MFADARCIGEK +NGEDCFILKLC DPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVH+EDSHLTRIQSNGGDAVYWETTI+S+L+DYRPVEGIMIAHSGRSVVTLFRFGE+AM
Sbjct:  294 MFADARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSNGGDAVYWETTINSFLEDYRPVEGIMIAHSGRSVVTLFRFGEMAM 407
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: A5C1V9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00410 PE=4 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.253e-71
Identity = 105/114 (92.11%), Postives = 112/114 (98.25%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MFADARCIGEK +NGEDCFILKLC DPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVH+EDSHLTRIQSNGGDAVYWETTI+S+L+DYRPVEGIMIAHSGRS+VTLFRFGE+AM
Sbjct:  278 MFADARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSNGGDAVYWETTINSFLEDYRPVEGIMIAHSGRSIVTLFRFGEMAM 391
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: V7BDT6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G042600g PE=4 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.188e-71
Identity = 106/114 (92.98%), Postives = 112/114 (98.25%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MFADARCIGEKN+NGEDCFILKLCTDP+TLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTI+S+L DY+PVEGIMIAHSG SVVTLFRFGE+AM
Sbjct:  267 MFADARCIGEKNINGEDCFILKLCTDPETLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTINSFLSDYKPVEGIMIAHSGHSVVTLFRFGEMAM 380
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0PJR3_GOSAR2.203e-76100.00Glutamyl-tRNA (Gln) amidotransferase subunit A OS=... [more]
A0A0D2VZK7_GOSRA1.020e-7599.12Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061E039_THECC3.561e-7495.61Soluble secretory phospholipase A2 receptor OS=The... [more]
A0A067LB46_JATCU1.339e-7292.98Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A067F2X2_CITSI2.770e-7293.86Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4SB82_9ROSI2.770e-7293.86Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A0B2S6M8_GLYSO4.939e-7292.11Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
A0A068TMU3_COFCA8.512e-7292.98Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
A5C1V9_VITVI1.253e-7192.11Putative uncharacterized protein OS=Vitis vinifera... [more]
V7BDT6_PHAVU2.188e-7192.98Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006873Protein of unknown function DUF620PFAMPF04788DUF620coord: 1..113
e-value: 3.9E-54
score: 183.5
NoneNo IPR availablePANTHERPTHR31300FAMILY NOT NAMEDcoord: 1..114
NoneNo IPR availablePANTHERPTHR31300:SF1SUBFAMILY NOT NAMEDcoord: 1..114

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0004586 ID=g.arboreum_cottongen_reftransV1_0004586; Name=g.arboreum_cottongen_reftransV1_0004586; organism=Gossypium arboreum; type=contig; length=346bp
GTATGTTTGCTGATGCAAGATGCATAGGTGAAAAAAATGTTAACGGTGAA
GATTGCTTCATCCTCAAGTTATGTACCGATCCGCAAACGCTTAAGGCGAG
GAGTGAAGGCCCGGCGGAGATCATTAGGCATGTTTTATTCGGTTACTTTA
GTCAGAAGACTGGACTTCTTGTTCACATCGAAGACTCACATCTGACTCGT
ATTCAATCTAACGGCGGTGATGCTGTTTATTGGGAAACCACAATCGATTC
ATATCTCGATGATTACCGACCCGTTGAAGGTATCATGATAGCACATTCCG
GTCGTTCTGTTGTTACACTTTTCAGGTTCGGGGAAGTCGCAATGAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006873DUF620