g.arboreum_cottongen_reftransV1_0000424, g.arboreum_cottongen_reftransV1_0000424 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0000424
Unique Nameg.arboreum_cottongen_reftransV1_0000424
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length612
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0000424:1..612 .
Chr6:65991354..65992046 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A0A0D2SZ79_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G025800 PE=4 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.644e-78
Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = -3
Query:  104 PKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRPRPF 475
            PKRFTVGGSQHWQFGVNYTDWSLK+APFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLKKKNKKKPYYFVCGERNGFHCKVGIMKFAVAPLLRPRPF
Sbjct:    6 PKRFTVGGSQHWQFGVNYTDWSLKTAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLKKKNKKKPYYFVCGERNGFHCKVGIMKFAVAPLLRPRPF 129          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A0A061E0S0_THECC (CUB and sushi domain-containing protein 3 OS=Theobroma cacao GN=TCM_007009 PE=4 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.797e-76
Identity = 121/167 (72.46%), Postives = 136/167 (81.44%), Query Frame = -3
Query:  116 FRFAQGLVLLQAIACVVEVSLANK---------GWDSHTYPYNHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLR 589
            F FAQGLVL+   A ++ VSLANK          W SH +P+NH++ PK+  VGGSQ+WQFGVNYTDWSLK+APFYFNDTLVFKYDPPSNTTFPHSV LLPNLRSFLNCDL+KAK+IAN TQGGGNGFEFVL    + +PYYF CGERNGFHCK G+MKFAV PLLR
Sbjct:    4 FTFAQGLVLVLIAASMLGVSLANKDWGYGFNHSAWGSH-HPHNHTNGPKKIIVGGSQNWQFGVNYTDWSLKNAPFYFNDTLVFKYDPPSNTTFPHSVYLLPNLRSFLNCDLRKAKMIANPTQGGGNGFEFVL---KRWRPYYFACGERNGFHCKDGLMKFAVVPLLR 166          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A0A0D2V906_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G041200 PE=4 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 6.191e-69
Identity = 119/169 (70.41%), Postives = 133/169 (78.70%), Query Frame = -3
Query:  110 MGFRFA-QGLVLLQAIACVVEVSLANKGWDS------HTYPYNHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRPR 595
            MGF FA QGLVL+   + +V VSLANK W S        +P+NH++ PKR  VGGSQ+W FGVNYTDWSLK+ PFY NDTLVFKYDPPSNTTFPHSV LLP+L+SFLNCDL+KAK+IAN TQG GNGFEFVL    K KPYYF CGERNGFHCKVG+MKFAV   LR R
Sbjct:    1 MGFTFAHQGLVLVLVASSMVGVSLANKEWGSLGSHPHPHHPHNHTNVPKRIIVGGSQNWHFGVNYTDWSLKNGPFYINDTLVFKYDPPSNTTFPHSVYLLPHLKSFLNCDLRKAKMIANPTQGSGNGFEFVL---KKWKPYYFACGERNGFHCKVGLMKFAVVSPLRRR 166          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A0A0D2S850_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G042000 PE=4 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.128e-64
Identity = 105/186 (56.45%), Postives = 126/186 (67.74%), Query Frame = -3
Query:  116 MGFRFAQGLVLLQAIACVVEVSLANKGWDS--------------------HT------YPYNHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLR 595
            MGF FA  L+L+ A+A V+ +SLANK W S                    HT      +P N +  PK+  VGGS++W FG NY+DW+  +APFYFNDTLVFKYDPPSNTTFPHSV L P+  S+LNCDLK+AK++AN TQGGG+GFEFVL    +  PYYF CGERNGFHCKVG M+F V PL R
Sbjct:    1 MGFAFAYRLILVVAVASVLGISLANKDWGSPNSNYTGWGWGWGWGSSKSNHTGQGFNNHPVNETQGPKKIIVGGSENWHFGFNYSDWAFNNAPFYFNDTLVFKYDPPSNTTFPHSVYLFPDRWSYLNCDLKRAKMVANATQGGGDGFEFVL---KRWTPYYFACGERNGFHCKVGSMRFMVMPLFR 183          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A0A0D2TUJ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G041800 PE=4 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.384e-64
Identity = 104/186 (55.91%), Postives = 126/186 (67.74%), Query Frame = -3
Query:  116 MGFRFAQGLVLLQAIACVVEVSLANKGWDS--------------------HT------YPYNHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLR 595
            MGF FA  L+L+ A+A V+ +SLANK W S                    HT      +P N +  PK+  VGGS++W FG NY+DW+  +APFYFNDTLVFKYDPPSNTTFPHSV L P+  S+LNCDLK+AK++AN T+GGG+GFEFVL    +  PYYF CGERNGFHCKVG M+F V PL R
Sbjct:    1 MGFAFAYRLILVVAVASVLGISLANKDWGSPNSNYTGWGWGWGWGSSKSNHTGQGFNNHPVNETQGPKKIIVGGSENWHFGFNYSDWAFNNAPFYFNDTLVFKYDPPSNTTFPHSVYLFPDRWSYLNCDLKRAKMVANTTEGGGDGFEFVL---KRWTPYYFACGERNGFHCKVGSMRFMVMPLFR 183          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A0A0D2TVP4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G025700 PE=4 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 9.866e-57
Identity = 94/165 (56.97%), Postives = 118/165 (71.52%), Query Frame = -3
Query:  116 VLLQAIACVVEVSLANKGWDS---HT-----------YPYNHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLR 568
            +++  +A +  +S+ANK W S   HT           +P N +  P +  VGGS++W FG NYT+W+ ++ PFYFNDTLVFKYDPPSN TFPHSV LLPNL SFL CDL++AK+IA+ TQGGG+GF FVL   N+ +PYYF CGERNGFHCKVG M+F V PL R
Sbjct:    9 LVIMMVASLWGMSIANKDWGSGYNHTNWGWGWGWGPYHPPNQTQGPNKINVGGSENWHFGFNYTEWAFQNGPFYFNDTLVFKYDPPSNNTFPHSVYLLPNLWSFLTCDLRRAKMIASPTQGGGDGFHFVL---NRWRPYYFACGERNGFHCKVGRMRFVVVPLFR 170          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: K7K845_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.147e-55
Identity = 90/175 (51.43%), Postives = 114/175 (65.14%), Query Frame = -3
Query:  113 MGFRFAQGLVLLQAIACVVEVSLANKGWD--------------SHTYPYNHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595
            M  +FA  L L   +A ++ +S+ANK W                + +       P++  VGGS+ W FG NYTDW+ K+ PFY NDTLVFKYD P+ T+FPHSV + PNL SFLNCD+K AK++AN TQGGG GF FVL   N+ +PY+F CGERNGFHC  G MKFAV P++RP
Sbjct:    1 MATKFAHALTLFVLVASMLSMSMANKDWSFGSNSNYSDWWSRFRNRHQNKTEQEPRKIIVGGSEGWHFGFNYTDWAFKNGPFYLNDTLVFKYDAPNATSFPHSVYIFPNLWSFLNCDVKSAKMLANPTQGGGEGFHFVL---NRWQPYFFACGERNGFHCNSGQMKFAVMPIIRP 172          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A0A0B2RZ46_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_034355 PE=4 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.147e-55
Identity = 90/175 (51.43%), Postives = 114/175 (65.14%), Query Frame = -3
Query:  113 MGFRFAQGLVLLQAIACVVEVSLANKGWD--------------SHTYPYNHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595
            M  +FA  L L   +A ++ +S+ANK W                + +       P++  VGGS+ W FG NYTDW+ K+ PFY NDTLVFKYD P+ T+FPHSV + PNL SFLNCD+K AK++AN TQGGG GF FVL   N+ +PY+F CGERNGFHC  G MKFAV P++RP
Sbjct:    1 MATKFAHALTLFVLVASMLSMSMANKDWSFGSNSNYSDWWSRFRNRHQNKTEQEPRKIIVGGSEGWHFGFNYTDWAFKNGPFYLNDTLVFKYDAPNATSFPHSVYIFPNLWSFLNCDVKSAKMLANPTQGGGEGFHFVL---NRWQPYFFACGERNGFHCNSGQMKFAVMPIIRP 172          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: I3STL3_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.477e-55
Identity = 89/175 (50.86%), Postives = 113/175 (64.57%), Query Frame = -3
Query:  113 MGFRFAQGLVLLQAIACVVEVSLANKGWDS--------------HTYPYNHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595
            M  +F Q L++L     +  VS+ANK W S              H         PK+  VGGS+HW FG NY+DW++KSAPFY NDTLVFK+D P+ +TFPHSV +  ++ SF+NCD+K+AK++AN TQG G GF FV     K +PY+F CGERNGFHC  G MKFAV P+LRP
Sbjct:    1 MAVKFTQALIMLVITVSMFAVSMANKDWSSGFNYTDWWSRFGNHHHNKTQQQQQPKQILVGGSEHWHFGYNYSDWAIKSAPFYLNDTLVFKFDAPNTSTFPHSVYMFKDIYSFMNCDIKRAKMLANPTQGAGEGFMFV---SKKWQPYFFGCGERNGFHCNNGTMKFAVMPMLRP 172          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A0A067E1M7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037561mg PE=4 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.662e-54
Identity = 90/178 (50.56%), Postives = 117/178 (65.73%), Query Frame = -3
Query:  116 MGFRFAQGLVLLQAIACVVEVSLANKGW-----DSHTYPY-------------NHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLR 595
            M F  A  L+L+ + A ++ VS+AN+GW     +++ +P+             +    P +  VGGS +W FG NY+ W+ ++APFY ND LVFKYDPP++T FPHSV  LPNL S+L CDL +AK+IAN TQGGG+GFEFVL    +  PYYF CGER GFHC+ G MKF V PLLR
Sbjct:    1 MAFTSAHSLILILSAASMLTVSMANRGWSYGFNNTYYWPWGPNNGSPGSNNTNDDDDGPSKIVVGGSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVL---KRWLPYYFACGERGGFHCREGRMKFMVLPLLR 175          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2SZ79_GOSRA1.644e-7899.19Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061E0S0_THECC1.797e-7672.46CUB and sushi domain-containing protein 3 OS=Theob... [more]
A0A0D2V906_GOSRA6.191e-6970.41Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2S850_GOSRA3.128e-6456.45Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2TUJ9_GOSRA8.384e-6455.91Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2TVP4_GOSRA9.866e-5756.97Uncharacterized protein OS=Gossypium raimondii GN=... [more]
K7K845_SOYBN8.147e-5551.43Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2RZ46_GLYSO8.147e-5551.43Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
I3STL3_LOTJA9.477e-5550.86Uncharacterized protein OS=Lotus japonicus PE=2 SV... [more]
A0A067E1M7_CITSI2.662e-5450.56Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003245Phytocyanin domainPFAMPF02298Cu_bind_likecoord: 56..153
e-value: 7.1E-5
score: 22.6
IPR003245Phytocyanin domainPROSITEPS51485PHYTOCYANINcoord: 46..163
score: 22.468
IPR008972CupredoxinGENE3D2.60.40.420coord: 46..161
e-value: 7.6E-20
score: 70.6
IPR008972CupredoxinSUPERFAMILY49503Cupredoxinscoord: 46..161
NoneNo IPR availablePANTHERPTHR34052FAMILY NOT NAMEDcoord: 36..168
NoneNo IPR availablePANTHERPTHR34052:SF1AUXIN RESPONSE FACTOR 30-RELATEDcoord: 36..168
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..168
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.645

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0000424 ID=g.arboreum_cottongen_reftransV1_0000424; Name=g.arboreum_cottongen_reftransV1_0000424; organism=Gossypium arboreum; type=contig; length=612bp
GGATTACTGAATTCCAATCTCTAATCTTATTGTGAATAAAATGATACAGA
ACATAATAAAGGCAGGCACTGCGTCTTCCCTGGATTCTGGTGGTGTTCCA
TCAGAAGGGCCGAGGACGGAGGAGCGGCGCCACAGCGAATTTCATAATCC
CAACCTTGCAGTGAAAGCCATTGCGCTCACCACAAACGAAGTAGTAGGGC
TTCTTCTTATTCTTCTTCTTCAAAACAAACTCAAACCCATTTCCGCCACC
TTGAGTTTGGTTGGCGATCAGCTTAGCTTTCTTCAAGTCGCAGTTAAGGA
AGCTCCTGAGGTTGGGTAGCAATGAGACACTGTGAGGAAACGTGGTGTTG
CTTGGTGGATCATATTTGAACACAAGAGTGTCATTGAAGTAGAAGGGAGC
GCTTTTGAGTGACCAGTCGGTGTAGTTGACCCCAAATTGCCAATGCTGTG
ATCCCCCAACAGTGAACCTTTTGGGGGCACTGCTATGATTGTAGGGATAA
GTATGGGAATCCCAACCCTTGTTAGCCAAGCTTACTTCCACTACGCAGGC
AATAGCCTGCAGTAGAACAAGCCCTTGAGCAAACCTAAACCCCATTTTGT
CAATCAAGTTTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR003245Phytocyanin_dom
IPR008972Cupredoxin
Vocabulary: Molecular Function
TermDefinition
GO:0009055electron transfer activity