g.arboreum_cottongen_reftransV1_0000424, g.arboreum_cottongen_reftransV1_0000424 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A0A0D2SZ79_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G025800 PE=4 SV=1) HSP 1 Score: 242.662 bits (618), Expect = 1.644e-78 Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = -3 Query: 104 PKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRPRPF 475 PKRFTVGGSQHWQFGVNYTDWSLK+APFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLKKKNKKKPYYFVCGERNGFHCKVGIMKFAVAPLLRPRPF Sbjct: 6 PKRFTVGGSQHWQFGVNYTDWSLKTAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLKKKNKKKPYYFVCGERNGFHCKVGIMKFAVAPLLRPRPF 129
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A0A061E0S0_THECC (CUB and sushi domain-containing protein 3 OS=Theobroma cacao GN=TCM_007009 PE=4 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 1.797e-76 Identity = 121/167 (72.46%), Postives = 136/167 (81.44%), Query Frame = -3 Query: 116 FRFAQGLVLLQAIACVVEVSLANK---------GWDSHTYPYNHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLR 589 F FAQGLVL+ A ++ VSLANK W SH +P+NH++ PK+ VGGSQ+WQFGVNYTDWSLK+APFYFNDTLVFKYDPPSNTTFPHSV LLPNLRSFLNCDL+KAK+IAN TQGGGNGFEFVL + +PYYF CGERNGFHCK G+MKFAV PLLR Sbjct: 4 FTFAQGLVLVLIAASMLGVSLANKDWGYGFNHSAWGSH-HPHNHTNGPKKIIVGGSQNWQFGVNYTDWSLKNAPFYFNDTLVFKYDPPSNTTFPHSVYLLPNLRSFLNCDLRKAKMIANPTQGGGNGFEFVL---KRWRPYYFACGERNGFHCKDGLMKFAVVPLLR 166
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A0A0D2V906_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G041200 PE=4 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 6.191e-69 Identity = 119/169 (70.41%), Postives = 133/169 (78.70%), Query Frame = -3 Query: 110 MGFRFA-QGLVLLQAIACVVEVSLANKGWDS------HTYPYNHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRPR 595 MGF FA QGLVL+ + +V VSLANK W S +P+NH++ PKR VGGSQ+W FGVNYTDWSLK+ PFY NDTLVFKYDPPSNTTFPHSV LLP+L+SFLNCDL+KAK+IAN TQG GNGFEFVL K KPYYF CGERNGFHCKVG+MKFAV LR R Sbjct: 1 MGFTFAHQGLVLVLVASSMVGVSLANKEWGSLGSHPHPHHPHNHTNVPKRIIVGGSQNWHFGVNYTDWSLKNGPFYINDTLVFKYDPPSNTTFPHSVYLLPHLKSFLNCDLRKAKMIANPTQGSGNGFEFVL---KKWKPYYFACGERNGFHCKVGLMKFAVVSPLRRR 166
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A0A0D2S850_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G042000 PE=4 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 3.128e-64 Identity = 105/186 (56.45%), Postives = 126/186 (67.74%), Query Frame = -3 Query: 116 MGFRFAQGLVLLQAIACVVEVSLANKGWDS--------------------HT------YPYNHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLR 595 MGF FA L+L+ A+A V+ +SLANK W S HT +P N + PK+ VGGS++W FG NY+DW+ +APFYFNDTLVFKYDPPSNTTFPHSV L P+ S+LNCDLK+AK++AN TQGGG+GFEFVL + PYYF CGERNGFHCKVG M+F V PL R Sbjct: 1 MGFAFAYRLILVVAVASVLGISLANKDWGSPNSNYTGWGWGWGWGSSKSNHTGQGFNNHPVNETQGPKKIIVGGSENWHFGFNYSDWAFNNAPFYFNDTLVFKYDPPSNTTFPHSVYLFPDRWSYLNCDLKRAKMVANATQGGGDGFEFVL---KRWTPYYFACGERNGFHCKVGSMRFMVMPLFR 183
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A0A0D2TUJ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G041800 PE=4 SV=1) HSP 1 Score: 207.223 bits (526), Expect = 8.384e-64 Identity = 104/186 (55.91%), Postives = 126/186 (67.74%), Query Frame = -3 Query: 116 MGFRFAQGLVLLQAIACVVEVSLANKGWDS--------------------HT------YPYNHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLR 595 MGF FA L+L+ A+A V+ +SLANK W S HT +P N + PK+ VGGS++W FG NY+DW+ +APFYFNDTLVFKYDPPSNTTFPHSV L P+ S+LNCDLK+AK++AN T+GGG+GFEFVL + PYYF CGERNGFHCKVG M+F V PL R Sbjct: 1 MGFAFAYRLILVVAVASVLGISLANKDWGSPNSNYTGWGWGWGWGSSKSNHTGQGFNNHPVNETQGPKKIIVGGSENWHFGFNYSDWAFNNAPFYFNDTLVFKYDPPSNTTFPHSVYLFPDRWSYLNCDLKRAKMVANTTEGGGDGFEFVL---KRWTPYYFACGERNGFHCKVGSMRFMVMPLFR 183
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A0A0D2TVP4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G025700 PE=4 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 9.866e-57 Identity = 94/165 (56.97%), Postives = 118/165 (71.52%), Query Frame = -3 Query: 116 VLLQAIACVVEVSLANKGWDS---HT-----------YPYNHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLR 568 +++ +A + +S+ANK W S HT +P N + P + VGGS++W FG NYT+W+ ++ PFYFNDTLVFKYDPPSN TFPHSV LLPNL SFL CDL++AK+IA+ TQGGG+GF FVL N+ +PYYF CGERNGFHCKVG M+F V PL R Sbjct: 9 LVIMMVASLWGMSIANKDWGSGYNHTNWGWGWGWGPYHPPNQTQGPNKINVGGSENWHFGFNYTEWAFQNGPFYFNDTLVFKYDPPSNNTFPHSVYLLPNLWSFLTCDLRRAKMIASPTQGGGDGFHFVL---NRWRPYYFACGERNGFHCKVGRMRFVVVPLFR 170
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: K7K845_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 8.147e-55 Identity = 90/175 (51.43%), Postives = 114/175 (65.14%), Query Frame = -3 Query: 113 MGFRFAQGLVLLQAIACVVEVSLANKGWD--------------SHTYPYNHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595 M +FA L L +A ++ +S+ANK W + + P++ VGGS+ W FG NYTDW+ K+ PFY NDTLVFKYD P+ T+FPHSV + PNL SFLNCD+K AK++AN TQGGG GF FVL N+ +PY+F CGERNGFHC G MKFAV P++RP Sbjct: 1 MATKFAHALTLFVLVASMLSMSMANKDWSFGSNSNYSDWWSRFRNRHQNKTEQEPRKIIVGGSEGWHFGFNYTDWAFKNGPFYLNDTLVFKYDAPNATSFPHSVYIFPNLWSFLNCDVKSAKMLANPTQGGGEGFHFVL---NRWQPYFFACGERNGFHCNSGQMKFAVMPIIRP 172
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A0A0B2RZ46_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_034355 PE=4 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 8.147e-55 Identity = 90/175 (51.43%), Postives = 114/175 (65.14%), Query Frame = -3 Query: 113 MGFRFAQGLVLLQAIACVVEVSLANKGWD--------------SHTYPYNHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595 M +FA L L +A ++ +S+ANK W + + P++ VGGS+ W FG NYTDW+ K+ PFY NDTLVFKYD P+ T+FPHSV + PNL SFLNCD+K AK++AN TQGGG GF FVL N+ +PY+F CGERNGFHC G MKFAV P++RP Sbjct: 1 MATKFAHALTLFVLVASMLSMSMANKDWSFGSNSNYSDWWSRFRNRHQNKTEQEPRKIIVGGSEGWHFGFNYTDWAFKNGPFYLNDTLVFKYDAPNATSFPHSVYIFPNLWSFLNCDVKSAKMLANPTQGGGEGFHFVL---NRWQPYFFACGERNGFHCNSGQMKFAVMPIIRP 172
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: I3STL3_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 9.477e-55 Identity = 89/175 (50.86%), Postives = 113/175 (64.57%), Query Frame = -3 Query: 113 MGFRFAQGLVLLQAIACVVEVSLANKGWDS--------------HTYPYNHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595 M +F Q L++L + VS+ANK W S H PK+ VGGS+HW FG NY+DW++KSAPFY NDTLVFK+D P+ +TFPHSV + ++ SF+NCD+K+AK++AN TQG G GF FV K +PY+F CGERNGFHC G MKFAV P+LRP Sbjct: 1 MAVKFTQALIMLVITVSMFAVSMANKDWSSGFNYTDWWSRFGNHHHNKTQQQQQPKQILVGGSEHWHFGYNYSDWAIKSAPFYLNDTLVFKFDAPNTSTFPHSVYMFKDIYSFMNCDIKRAKMLANPTQGAGEGFMFV---SKKWQPYFFGCGERNGFHCNNGTMKFAVMPMLRP 172
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A0A067E1M7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037561mg PE=4 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 2.662e-54 Identity = 90/178 (50.56%), Postives = 117/178 (65.73%), Query Frame = -3 Query: 116 MGFRFAQGLVLLQAIACVVEVSLANKGW-----DSHTYPY-------------NHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLR 595 M F A L+L+ + A ++ VS+AN+GW +++ +P+ + P + VGGS +W FG NY+ W+ ++APFY ND LVFKYDPP++T FPHSV LPNL S+L CDL +AK+IAN TQGGG+GFEFVL + PYYF CGER GFHC+ G MKF V PLLR Sbjct: 1 MAFTSAHSLILILSAASMLTVSMANRGWSYGFNNTYYWPWGPNNGSPGSNNTNDDDDGPSKIVVGGSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVL---KRWLPYYFACGERGGFHCREGRMKFMVLPLLR 175 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0000424 ID=g.arboreum_cottongen_reftransV1_0000424; Name=g.arboreum_cottongen_reftransV1_0000424; organism=Gossypium arboreum; type=contig; length=612bpback to top |