g.arboreum_cottongen_reftransV1_0005094, g.arboreum_cottongen_reftransV1_0005094 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0005094
Unique Nameg.arboreum_cottongen_reftransV1_0005094
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length615
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0005094:1..615 .
Chr12:26332279..26334720 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: A0A0B0PP79_GOSAR (Putative sel1-like repeat-containing protein L18 OS=Gossypium arboreum GN=F383_10105 PE=4 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.281e-104
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 3 
Query:   30 MGKSLPGATKLQHLAKVTGAAHHLNTTGKNPKPTTLNRRIISEDNKPNSKKKMESSSASQRLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 476
            MGKSLPGATKLQHLAKVTGAAHHLNTTGKNPKPTTLNRRIISEDNKPNSKKKMESSSASQRLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS
Sbjct:    1 MGKSLPGATKLQHLAKVTGAAHHLNTTGKNPKPTTLNRRIISEDNKPNSKKKMESSSASQRLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 149
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BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: A0A0D2TN68_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G119700 PE=4 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 3.908e-102
Identity = 146/149 (97.99%), Postives = 147/149 (98.66%), Query Frame = 3 
Query:   30 MGKSLPGATKLQHLAKVTGAAHHLNTTGKNPKPTTLNRRIISEDNKPNSKKKMESSSASQRLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 476
            MGKSLPGATKLQHLAKVTGAAHHLNTTGKNPKPTTLNRRII EDNKPNSKKKMESSSASQRLPLSEVVSDCVKRWFKD+LKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVS KHPGYNASDSDSDEIKGDS
Sbjct:    1 MGKSLPGATKLQHLAKVTGAAHHLNTTGKNPKPTTLNRRIIGEDNKPNSKKKMESSSASQRLPLSEVVSDCVKRWFKDSLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSHKHPGYNASDSDSDEIKGDS 149
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: A0A0D2V5J4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G119700 PE=4 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 3.342e-90
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 3 
Query:   30 MGKSLPGATKLQHLAKVTGAAHHLNTTGKNPKPTTLNRRIISEDNKPNSKKKMESSSASQRLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPG 431
            MGKSLPGATKLQHLAKVTGAAHHLNTTGKNPKPTTLNRRII EDNKPNSKKKMESSSASQRLPLSEVVSDCVKRWFKD+LKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVS KHPG
Sbjct:    1 MGKSLPGATKLQHLAKVTGAAHHLNTTGKNPKPTTLNRRIIGEDNKPNSKKKMESSSASQRLPLSEVVSDCVKRWFKDSLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSHKHPG 134
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BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: A0A061EPR3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_021578 PE=4 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 8.025e-85
Identity = 129/147 (87.76%), Postives = 133/147 (90.48%), Query Frame = 3 
Query:   36 KSLPGATKLQHLAKVTGAAHHLNTTGKNPKPTTLNRRIISEDNKPNSKKKMESSSASQRLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 476
            +SLPGATKLQHLAK T  A HLN TGKN KPT  NRRI+SED    SK KMESSSASQRLPLS+VVSDCVKRWFKDTLKEAKAGDVNMQVLV QMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDE+KGDS
Sbjct:   21 RSLPGATKLQHLAKAT--AQHLNKTGKNAKPTAQNRRIVSEDK---SKNKMESSSASQRLPLSDVVSDCVKRWFKDTLKEAKAGDVNMQVLVSQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEMKGDS 162
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: A0A067JS39_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00397 PE=4 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 7.190e-55
Identity = 99/159 (62.26%), Postives = 112/159 (70.44%), Query Frame = 3 
Query:   30 MGKSLPGATKLQHLAKVTGAAHHLNTTGKNPKPTTLNRRIISEDNKPNSKKKMESSSASQ----------RLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 476
            MGKS    T     AK+   A HL  + K  KPT+  +    E N         +++++           RLPLSEVVSDCVKRWFKDTLK+AK+GD+NMQVLV QMYYSGYGVPRDAQKGRIWMTRASR RSSVWKVSDKHPGYNASDSDSDE+KGDS
Sbjct:    1 MGKSFAATT-----AKIHNLAKHLKPS-KYAKPTSRVQTKKMESNADTDNLNNMNTNSNSSNNSNININARLPLSEVVSDCVKRWFKDTLKDAKSGDINMQVLVSQMYYSGYGVPRDAQKGRIWMTRASRTRSSVWKVSDKHPGYNASDSDSDELKGDS 153
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BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: A0A0A0LCP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G730830 PE=4 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 7.419e-54
Identity = 86/100 (86.00%), Postives = 92/100 (92.00%), Query Frame = 3 
Query:  186 MESSSASQ---RLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 476
            ME S A++   R+PLSEVVSDCVKRWFKDTLKEAKAGD+NMQVLVGQMYYSGYGVPRDAQKGRIWMT+ASR RSSVWKVSDKHPGYNASDSDSDE+  DS
Sbjct:    1 MEISGATEALNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100
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BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: A0A068V099_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_78 OS=Coffea canephora GN=GSCOC_T00039099001 PE=4 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.184e-53
Identity = 99/178 (55.62%), Postives = 119/178 (66.85%), Query Frame = 3 
Query:   30 MGKSLPGATKLQHLAKVTGAAH-HLNTTGKNPKPTTLN------------RRIISEDNK-PN---SKKKME---------SSSASQ---RLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 476
            MGKSLP    LQ L++V      H     K+P+PTTL+            RR+ S+D + P      K ME         S+SAS+   R+PL+E V+DCVKRWF+DTLKEAKAGD  MQVLV QMYYSGYG+PRDAQKG+ WM RASR RSSVWKVSDKHPGYNASDSDS++ K ++
Sbjct:    1 MGKSLPSPAALQELSRVISTNRLHRRQVPKSPRPTTLSSAQPPAAGLSGSRRLASKDQQLPQLRLENKGMEGKKSTSNDNSTSASEQGRRIPLAEAVADCVKRWFQDTLKEAKAGDTAMQVLVSQMYYSGYGIPRDAQKGKTWMNRASRARSSVWKVSDKHPGYNASDSDSEDTKDEA 178
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BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: M5W4M8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013808mg PE=4 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 3.151e-53
Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 3 
Query:  186 MESSSASQ-----RLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 476
            ME+ S+S+     RLPLSEVVSDC+KRWFKDTLKEAKAGD+NMQVLVGQMYY+GYGVPRDA  GRIW+TRASR RSSVWKVSDK PGYNASDSDSDE+KGDS
Sbjct:    1 METESSSKKETNHRLPLSEVVSDCIKRWFKDTLKEAKAGDINMQVLVGQMYYNGYGVPRDAHMGRIWITRASRTRSSVWKVSDKQPGYNASDSDSDELKGDS 102
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: W9QXE0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021946 PE=4 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.598e-53
Identity = 84/96 (87.50%), Postives = 91/96 (94.79%), Query Frame = 3 
Query:  189 ESSSASQRLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 476
            E+ + + RLPLSEVV+DCVKRWFKDTLKEAK+GD+NMQVLVGQMYYSGYGVPRDAQKGRIW+TRASR RSSVWKVSDKHPGYNASDSDSDE KGDS
Sbjct:  253 ENKNDNNRLPLSEVVTDCVKRWFKDTLKEAKSGDINMQVLVGQMYYSGYGVPRDAQKGRIWITRASRTRSSVWKVSDKHPGYNASDSDSDEPKGDS 348
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: A0A059DCN8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A00636 PE=4 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 3.354e-52
Identity = 82/89 (92.13%), Postives = 87/89 (97.75%), Query Frame = 3 
Query:  210 RLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 476
            R+PLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIW+T+ASR+RSSVWKVSDK PGYNASDSDSDEIK +S
Sbjct:   86 RVPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWITKASRIRSSVWKVSDKRPGYNASDSDSDEIKDNS 174
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0PP79_GOSAR1.281e-104100.00Putative sel1-like repeat-containing protein L18 O... [more]
A0A0D2TN68_GOSRA3.908e-10297.99Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2V5J4_GOSRA3.342e-9097.76Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061EPR3_THECC8.025e-8587.76Uncharacterized protein OS=Theobroma cacao GN=TCM_... [more]
A0A067JS39_JATCU7.190e-5562.26Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A0A0LCP0_CUCSA7.419e-5486.00Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
A0A068V099_COFCA1.184e-5355.62Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
M5W4M8_PRUPE3.151e-5382.35Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
W9QXE0_9ROSA4.598e-5387.50Uncharacterized protein OS=Morus notabilis GN=L484... [more]
A0A059DCN8_EUCGR3.354e-5292.13Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006597Sel1-like repeatSMARTSM00671sel1coord: 88..123
e-value: 3.7E-4
score: 29.8
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 78..121
e-value: 6.3E-7
score: 28.6
NoneNo IPR availablePANTHERPTHR36792FAMILY NOT NAMEDcoord: 55..149
NoneNo IPR availablePANTHERPTHR36792:SF2SUBFAMILY NOT NAMEDcoord: 55..149
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 80..121

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0005094 ID=g.arboreum_cottongen_reftransV1_0005094; Name=g.arboreum_cottongen_reftransV1_0005094; organism=Gossypium arboreum; type=contig; length=615bp
TTTCTGTCTTTAGGTTTTCAATTTATTTTATGGGAAAATCGCTGCCCGGC
GCAACCAAGCTTCAACATCTCGCAAAGGTTACCGGCGCCGCCCACCATCT
TAACACAACTGGGAAAAACCCAAAACCCACTACTCTGAACCGGCGGATTA
TAAGTGAAGACAACAAACCCAATTCCAAGAAGAAGATGGAGAGCTCCAGT
GCCAGTCAACGCCTCCCACTTTCCGAAGTCGTCTCCGATTGCGTTAAACG
TTGGTTCAAAGATACTCTCAAGGAAGCCAAAGCCGGGGACGTTAACATGC
AGGTTCTTGTGGGTCAAATGTATTATAGCGGTTATGGGGTTCCCCGGGAT
GCCCAAAAGGGAAGAATTTGGATGACAAGGGCGTCGAGGCTGCGGTCTTC
TGTTTGGAAAGTCAGCGATAAGCATCCAGGTTATAATGCGAGTGATTCAG
ATTCTGATGAAATCAAGGGTGATTCTTGAGTTTAACATACTTGGTCTCTG
CATTTCGAACATTTAGAATCGGTCCACATGGTGGTCATGCCTGTTTTGTC
TCCTTGAAAGTTCCTTGTTCCTGTGTTGTAACTCTTTTTTTTTTTTTTTT
TCCCTTTCTTTTTTG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
IPR011990TPR-like_helical_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding