g.arboreum_cottongen_reftransV1_0016458, g.arboreum_cottongen_reftransV1_0016458 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A0B0MSK6_GOSAR (Heat shock 70 kDa 17-like protein OS=Gossypium arboreum GN=F383_26975 PE=3 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 3.884e-79 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADSXXXXXXXXXXXXXXXNNAETEKDTSGDEKPAXXXXXXXXXXXXXXPEMHEEL 491 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADSIKKIPKPKPKTEKPINNAETEKDTSGDEKPAEESDSSKNEEDKVEPEMHEEL Sbjct: 717 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADSIKKIPKPKPKTEKPINNAETEKDTSGDEKPAEESDSSKNEEDKVEPEMHEEL 879
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A0D2TBY7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G224200 PE=3 SV=1) HSP 1 Score: 248.054 bits (632), Expect = 5.497e-72 Identity = 154/163 (94.48%), Postives = 154/163 (94.48%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADSXXXXXXXXXXXXXXXNNAETEKDTSGDEKPAXXXXXXXXXXXXXXPEMHEEL 491 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYL ELQQTIRGWEKDKPWLPK KVEELSINIDKFKTWLDEKEAEQQKMSG S PVFTSKEVYEKVT VQNKADSIKKIPKPKPKTEKPINN ETEKDTSGDEKPAEESDSSKNEED E EMHEEL Sbjct: 717 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLNELQQTIRGWEKDKPWLPKDKVEELSINIDKFKTWLDEKEAEQQKMSGLSTPVFTSKEVYEKVTFVQNKADSIKKIPKPKPKTEKPINNEETEKDTSGDEKPAEESDSSKNEEDNAESEMHEEL 879
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A0D2VD75_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G212100 PE=3 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 1.286e-47 Identity = 109/172 (63.37%), Postives = 134/172 (77.91%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADSXXXXXXXXX---------XXXXXXNNAETEKDTSGDEKPAXXXXXXXXXXXXXXPEMHEEL 491 A+EFQ+RLN LKA DPIFFRFKELTARPEAV+ AR+YL++L+QTIRGWE +KPWLPK +++ELS ++DK KTWLDEKEAEQ+K SG+S PVFTS+EVYEKV +Q+KA SIK+IPKPKP K N +EKDTS ++KPA +SDSS NE+ K E H+EL Sbjct: 715 ASEFQDRLNSLKATADPIFFRFKELTARPEAVEVARQYLSDLKQTIRGWETEKPWLPKDRIDELSTSMDKLKTWLDEKEAEQKKTSGYSTPVFTSEEVYEKVFNLQDKAASIKRIPKPKPKVEKPVKNETETKSENTTSSEKDTSENDKPAGDSDSSTNEKVKGGSEPHDEL 886
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A061FRC5_THECC (Heat shock protein 70 (Hsp 70) family protein isoform 1 OS=Theobroma cacao GN=TCM_044595 PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 2.359e-47 Identity = 118/176 (67.05%), Postives = 134/176 (76.14%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADSXXXXXXXXXX--------XXXXXNNAET-----EKDTSGDEKPAXXXXXXXXXXXXXXPEMHEEL 491 ATEFQE LNLLKA DPIFFR KELTA PEAV+ AR Y+TELQQTIRGWE DKPWLPK +V+ELS+N+D FKTWLD KEAE+ K SGFS PVFTS+EVYEK+ +Q+KA SIK+IPKPKPK TE NA T EKDTS ++KPA +SDSS NEE VE E H+EL Sbjct: 716 ATEFQEHLNLLKATADPIFFRLKELTALPEAVEVARLYVTELQQTIRGWETDKPWLPKDRVDELSVNMDNFKTWLDGKEAERNKTSGFSAPVFTSEEVYEKLFSLQDKAASIKRIPKPKPKVEKPIKNETETNSENANTSDSTPEKDTSQNDKPAGDSDSSTNEEVNVESEPHDEL 891
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A0B0PUL6_GOSAR (Heat shock 70 kDa 17-like protein OS=Gossypium arboreum GN=F383_00327 PE=3 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 1.382e-45 Identity = 105/172 (61.05%), Postives = 131/172 (76.16%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADSXXXXXXXXX---------XXXXXXNNAETEKDTSGDEKPAXXXXXXXXXXXXXXPEMHEEL 491 A+EFQ+RLN LK DPIFFRFKELTARPEAV+ AR+YL++L+QTI GWE +KPWLPK +++ELS ++DK KTWLDEKEAEQ+K SG+S PVFTS+EVYEKV +Q+KA S+K+IPKPKP K N +EKDTS ++KP +SDSS NE+ K E H+EL Sbjct: 715 ASEFQDRLNSLKTTADPIFFRFKELTARPEAVEVARQYLSDLKQTIHGWETEKPWLPKERIDELSTSMDKLKTWLDEKEAEQKKTSGYSTPVFTSEEVYEKVFNLQDKAASVKRIPKPKPKVEKPVKNETESKSENTTSSEKDTSENDKPVGDSDSSTNEKVKGGSEPHDEL 886
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: M5WYF8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001147mg PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 9.167e-39 Identity = 70/109 (64.22%), Postives = 88/109 (80.73%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKA 329 A+EFQERL+LLK DPIFFRFKELTARPEAV++AR+YL ELQQ +RGWE +KPW+PK ++ E+ + DK KTWLDEKEAEQ+K G+S P FTS EVY+K +++K Sbjct: 722 ASEFQERLDLLKTTGDPIFFRFKELTARPEAVEYARKYLVELQQIVRGWELNKPWIPKDRINEVLSDADKLKTWLDEKEAEQKKTPGYSKPAFTSSEVYQKTFDLEDKV 830
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: B9IHD2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s02100g PE=3 SV=2) HSP 1 Score: 150.214 bits (378), Expect = 3.309e-37 Identity = 69/111 (62.16%), Postives = 88/111 (79.28%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335 A EFQERL+ LKA DPIFFR+KEL+ARP A++ AR+Y+ ELQQ ++GWE KPWLPK +V+E+ + DK K+WLDEKEAEQ+K SGFS PV TS+E+Y KV +Q+K S Sbjct: 722 AKEFQERLDSLKAFGDPIFFRYKELSARPTAIELARKYIGELQQIVQGWETKKPWLPKDRVDEVVSDADKLKSWLDEKEAEQKKASGFSTPVLTSEEIYSKVLNLQDKVAS 832
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A067KKF1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08936 PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 5.814e-37 Identity = 69/109 (63.30%), Postives = 88/109 (80.73%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKA 329 ATEFQ+RL+ LK DPIFFR+KELTARP A + A +YL ELQQ ++GWEK+KPWLPK K++E+ + +K K+WLDEKEAEQ+K+S FS P FTS+EVYEK+ +QNK Sbjct: 718 ATEFQDRLDSLKTIGDPIFFRYKELTARPAAAELALKYLGELQQIVQGWEKNKPWLPKDKIDEVLSDAEKLKSWLDEKEAEQKKISAFSKPAFTSEEVYEKLFNLQNKV 826
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A022RW23_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a001153mg PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 1.513e-36 Identity = 68/111 (61.26%), Postives = 88/111 (79.28%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335 A+EFQERL++LKA DPIF RF ELTARP A + A+RYLTEL+Q ++GWEKDK WLPK +++E++ +K K WL +KEAEQ+K+SGF+ P FTS EVYEKV +Q+K S Sbjct: 716 ASEFQERLDMLKAIGDPIFLRFNELTARPAASQLAQRYLTELRQIVQGWEKDKSWLPKERIDEVTKEAEKLKNWLSDKEAEQKKISGFNKPAFTSDEVYEKVLDLQDKVAS 826
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: B9S3M9_RICCO (Heat shock 70 kDa protein, putative OS=Ricinus communis GN=RCOM_0673570 PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.086e-35 Identity = 65/109 (59.63%), Postives = 88/109 (80.73%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKA 329 ATEFQ+RL+ LKA DPIFFR+ ELTARP A++ AR+YL+ELQQ ++ WE +KPWLPK +++E+ + +K K+WLDEKEAEQ++ S FS PV TS+E+YEKV +Q+K Sbjct: 722 ATEFQDRLDSLKATGDPIFFRYNELTARPAAMELARKYLSELQQIVQSWETNKPWLPKNRIDEVRSDANKVKSWLDEKEAEQKRTSAFSKPVITSEEIYEKVFNLQDKV 830
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy Swiss-Prot
Match: HSP7R_ARATH (Heat shock 70 kDa protein 17 OS=Arabidopsis thaliana GN=HSP70-17 PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 1.985e-29 Identity = 61/109 (55.96%), Postives = 83/109 (76.15%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKA 329 ATEF++RL+ LKA PI FR +ELTARP A+++AR+YLTEL++ I+ WE +K WLPK K++E+S +K K+WLD+ AEQ+K S +S PVFTS EVY KV +Q+K Sbjct: 714 ATEFEKRLDSLKAIGSPISFRSEELTARPVAIEYARKYLTELKEIIKEWETNKTWLPKEKIDEVSKEAEKVKSWLDKNVAEQEKTSLWSKPVFTSTEVYAKVFTLQDKV 822 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0016458 ID=g.arboreum_cottongen_reftransV1_0016458; Name=g.arboreum_cottongen_reftransV1_0016458; organism=Gossypium arboreum; type=contig; length=814bpback to top |