g.arboreum_cottongen_reftransV1_0016458, g.arboreum_cottongen_reftransV1_0016458 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0016458
Unique Nameg.arboreum_cottongen_reftransV1_0016458
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length814
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr9chromosomeg.arboreum_cottongen_reftransV1_0016458:1..814 .
Chr9:43659..46868 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A0B0MSK6_GOSAR (Heat shock 70 kDa 17-like protein OS=Gossypium arboreum GN=F383_26975 PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 3.884e-79
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADSXXXXXXXXXXXXXXXNNAETEKDTSGDEKPAXXXXXXXXXXXXXXPEMHEEL 491
            ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADSIKKIPKPKPKTEKPINNAETEKDTSGDEKPAEESDSSKNEEDKVEPEMHEEL
Sbjct:  717 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADSIKKIPKPKPKTEKPINNAETEKDTSGDEKPAEESDSSKNEEDKVEPEMHEEL 879          
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A0D2TBY7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G224200 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 5.497e-72
Identity = 154/163 (94.48%), Postives = 154/163 (94.48%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADSXXXXXXXXXXXXXXXNNAETEKDTSGDEKPAXXXXXXXXXXXXXXPEMHEEL 491
            ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYL ELQQTIRGWEKDKPWLPK KVEELSINIDKFKTWLDEKEAEQQKMSG S PVFTSKEVYEKVT VQNKADSIKKIPKPKPKTEKPINN ETEKDTSGDEKPAEESDSSKNEED  E EMHEEL
Sbjct:  717 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLNELQQTIRGWEKDKPWLPKDKVEELSINIDKFKTWLDEKEAEQQKMSGLSTPVFTSKEVYEKVTFVQNKADSIKKIPKPKPKTEKPINNEETEKDTSGDEKPAEESDSSKNEEDNAESEMHEEL 879          
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A0D2VD75_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G212100 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.286e-47
Identity = 109/172 (63.37%), Postives = 134/172 (77.91%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADSXXXXXXXXX---------XXXXXXNNAETEKDTSGDEKPAXXXXXXXXXXXXXXPEMHEEL 491
            A+EFQ+RLN LKA  DPIFFRFKELTARPEAV+ AR+YL++L+QTIRGWE +KPWLPK +++ELS ++DK KTWLDEKEAEQ+K SG+S PVFTS+EVYEKV  +Q+KA SIK+IPKPKP            K  N   +EKDTS ++KPA +SDSS NE+ K   E H+EL
Sbjct:  715 ASEFQDRLNSLKATADPIFFRFKELTARPEAVEVARQYLSDLKQTIRGWETEKPWLPKDRIDELSTSMDKLKTWLDEKEAEQKKTSGYSTPVFTSEEVYEKVFNLQDKAASIKRIPKPKPKVEKPVKNETETKSENTTSSEKDTSENDKPAGDSDSSTNEKVKGGSEPHDEL 886          
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A061FRC5_THECC (Heat shock protein 70 (Hsp 70) family protein isoform 1 OS=Theobroma cacao GN=TCM_044595 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.359e-47
Identity = 118/176 (67.05%), Postives = 134/176 (76.14%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADSXXXXXXXXXX--------XXXXXNNAET-----EKDTSGDEKPAXXXXXXXXXXXXXXPEMHEEL 491
            ATEFQE LNLLKA  DPIFFR KELTA PEAV+ AR Y+TELQQTIRGWE DKPWLPK +V+ELS+N+D FKTWLD KEAE+ K SGFS PVFTS+EVYEK+  +Q+KA SIK+IPKPKPK        TE    NA T     EKDTS ++KPA +SDSS NEE  VE E H+EL
Sbjct:  716 ATEFQEHLNLLKATADPIFFRLKELTALPEAVEVARLYVTELQQTIRGWETDKPWLPKDRVDELSVNMDNFKTWLDGKEAERNKTSGFSAPVFTSEEVYEKLFSLQDKAASIKRIPKPKPKVEKPIKNETETNSENANTSDSTPEKDTSQNDKPAGDSDSSTNEEVNVESEPHDEL 891          
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A0B0PUL6_GOSAR (Heat shock 70 kDa 17-like protein OS=Gossypium arboreum GN=F383_00327 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.382e-45
Identity = 105/172 (61.05%), Postives = 131/172 (76.16%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADSXXXXXXXXX---------XXXXXXNNAETEKDTSGDEKPAXXXXXXXXXXXXXXPEMHEEL 491
            A+EFQ+RLN LK   DPIFFRFKELTARPEAV+ AR+YL++L+QTI GWE +KPWLPK +++ELS ++DK KTWLDEKEAEQ+K SG+S PVFTS+EVYEKV  +Q+KA S+K+IPKPKP            K  N   +EKDTS ++KP  +SDSS NE+ K   E H+EL
Sbjct:  715 ASEFQDRLNSLKTTADPIFFRFKELTARPEAVEVARQYLSDLKQTIHGWETEKPWLPKERIDELSTSMDKLKTWLDEKEAEQKKTSGYSTPVFTSEEVYEKVFNLQDKAASVKRIPKPKPKVEKPVKNETESKSENTTSSEKDTSENDKPVGDSDSSTNEKVKGGSEPHDEL 886          
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: M5WYF8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001147mg PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.167e-39
Identity = 70/109 (64.22%), Postives = 88/109 (80.73%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKA 329
            A+EFQERL+LLK   DPIFFRFKELTARPEAV++AR+YL ELQQ +RGWE +KPW+PK ++ E+  + DK KTWLDEKEAEQ+K  G+S P FTS EVY+K   +++K 
Sbjct:  722 ASEFQERLDLLKTTGDPIFFRFKELTARPEAVEYARKYLVELQQIVRGWELNKPWIPKDRINEVLSDADKLKTWLDEKEAEQKKTPGYSKPAFTSSEVYQKTFDLEDKV 830          
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: B9IHD2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s02100g PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 3.309e-37
Identity = 69/111 (62.16%), Postives = 88/111 (79.28%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335
            A EFQERL+ LKA  DPIFFR+KEL+ARP A++ AR+Y+ ELQQ ++GWE  KPWLPK +V+E+  + DK K+WLDEKEAEQ+K SGFS PV TS+E+Y KV  +Q+K  S
Sbjct:  722 AKEFQERLDSLKAFGDPIFFRYKELSARPTAIELARKYIGELQQIVQGWETKKPWLPKDRVDEVVSDADKLKSWLDEKEAEQKKASGFSTPVLTSEEIYSKVLNLQDKVAS 832          
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A067KKF1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08936 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 5.814e-37
Identity = 69/109 (63.30%), Postives = 88/109 (80.73%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKA 329
            ATEFQ+RL+ LK   DPIFFR+KELTARP A + A +YL ELQQ ++GWEK+KPWLPK K++E+  + +K K+WLDEKEAEQ+K+S FS P FTS+EVYEK+  +QNK 
Sbjct:  718 ATEFQDRLDSLKTIGDPIFFRYKELTARPAAAELALKYLGELQQIVQGWEKNKPWLPKDKIDEVLSDAEKLKSWLDEKEAEQKKISAFSKPAFTSEEVYEKLFNLQNKV 826          
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A022RW23_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a001153mg PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.513e-36
Identity = 68/111 (61.26%), Postives = 88/111 (79.28%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335
            A+EFQERL++LKA  DPIF RF ELTARP A + A+RYLTEL+Q ++GWEKDK WLPK +++E++   +K K WL +KEAEQ+K+SGF+ P FTS EVYEKV  +Q+K  S
Sbjct:  716 ASEFQERLDMLKAIGDPIFLRFNELTARPAASQLAQRYLTELRQIVQGWEKDKSWLPKERIDEVTKEAEKLKNWLSDKEAEQKKISGFNKPAFTSDEVYEKVLDLQDKVAS 826          
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: B9S3M9_RICCO (Heat shock 70 kDa protein, putative OS=Ricinus communis GN=RCOM_0673570 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.086e-35
Identity = 65/109 (59.63%), Postives = 88/109 (80.73%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKA 329
            ATEFQ+RL+ LKA  DPIFFR+ ELTARP A++ AR+YL+ELQQ ++ WE +KPWLPK +++E+  + +K K+WLDEKEAEQ++ S FS PV TS+E+YEKV  +Q+K 
Sbjct:  722 ATEFQDRLDSLKATGDPIFFRYNELTARPAAMELARKYLSELQQIVQSWETNKPWLPKNRIDEVRSDANKVKSWLDEKEAEQKRTSAFSKPVITSEEIYEKVFNLQDKV 830          
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy Swiss-Prot
Match: HSP7R_ARATH (Heat shock 70 kDa protein 17 OS=Arabidopsis thaliana GN=HSP70-17 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.985e-29
Identity = 61/109 (55.96%), Postives = 83/109 (76.15%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKA 329
            ATEF++RL+ LKA   PI FR +ELTARP A+++AR+YLTEL++ I+ WE +K WLPK K++E+S   +K K+WLD+  AEQ+K S +S PVFTS EVY KV  +Q+K 
Sbjct:  714 ATEFEKRLDSLKAIGSPISFRSEELTARPVAIEYARKYLTELKEIIKEWETNKTWLPKEKIDEVSKEAEKVKSWLDKNVAEQEKTSLWSKPVFTSTEVYAKVFTLQDKV 822          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0MSK6_GOSAR3.884e-79100.00Heat shock 70 kDa 17-like protein OS=Gossypium arb... [more]
A0A0D2TBY7_GOSRA5.497e-7294.48Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2VD75_GOSRA1.286e-4763.37Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061FRC5_THECC2.359e-4767.05Heat shock protein 70 (Hsp 70) family protein isof... [more]
A0A0B0PUL6_GOSAR1.382e-4561.05Heat shock 70 kDa 17-like protein OS=Gossypium arb... [more]
M5WYF8_PRUPE9.167e-3964.22Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
B9IHD2_POPTR3.309e-3762.16Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A067KKF1_JATCU5.814e-3763.30Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A022RW23_ERYGU1.513e-3661.26Uncharacterized protein OS=Erythranthe guttata GN=... [more]
B9S3M9_RICCO1.086e-3559.63Heat shock 70 kDa protein, putative OS=Ricinus com... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HSP7R_ARATH1.985e-2955.96Heat shock 70 kDa protein 17 OS=Arabidopsis thalia... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19375HEAT SHOCK PROTEIN 70KDAcoord: 2..67
NoneNo IPR availablePANTHERPTHR19375:SF90HYPOXIA UP-REGULATED PROTEIN 1coord: 2..67

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0016458 ID=g.arboreum_cottongen_reftransV1_0016458; Name=g.arboreum_cottongen_reftransV1_0016458; organism=Gossypium arboreum; type=contig; length=814bp
CTGCAACAGAGTTTCAAGAACGCCTAAATTTGTTAAAAGCTGCCACTGAT
CCAATATTTTTCCGATTTAAAGAGTTGACTGCAAGGCCAGAAGCAGTAAA
ATTTGCGCGACGATACCTTACTGAATTGCAACAGACTATTCGTGGGTGGG
AGAAGGACAAACCTTGGCTGCCAAAAGTTAAAGTAGAGGAGTTGTCGATC
AATATTGACAAGTTCAAGACTTGGTTGGATGAAAAGGAGGCCGAGCAGCA
GAAGATGTCTGGATTCAGCATGCCTGTTTTCACATCTAAAGAAGTCTACG
AGAAGGTAACCGGTGTGCAAAACAAGGCTGATAGCATTAAGAAAATCCCC
AAGCCAAAGCCTAAAACTGAGAAGCCCATAAATAATGCGGAAACAGAGAA
GGATACCTCTGGAGATGAAAAACCAGCTGAGGAGTCAGATAGCTCAAAGA
ACGAAGAAGATAAGGTAGAACCAGAGATGCACGAAGAGCTGTAATCAGTT
TTTAACACAACAAAAAGGACTCTCTTAACTAATGACGGGCCTTCTGACTT
GGTAAGTAGAGATTGATTTAATTCCAGCAAATTTAGTCTTATGAAAAAAA
TCATAGTATTGCTCTACTTTACCCTTTTTTGTGATTTGATCGTGGTCGGA
TCGAGTCCGGTAGTTCAAAGGCTTCTAAAACAGTTTTGTCTTCTAAAGAC
ACAGAGCAATGTTAGAAGATTTGTCATAAAAAGAGAAGTTTAGTTTTATT
ATCCTTCTCTAAGGATTTTGGATGCCAATATTAGTTTTATGTCAATTACC
ATTATAATCTGAAG
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