g.arboreum_cottongen_reftransV1_0020566, g.arboreum_cottongen_reftransV1_0020566 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0020566
Unique Name	g.arboreum_cottongen_reftransV1_0020566
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	1485

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr9	chromosome	g.arboreum_cottongen_reftransV1_0020566:1..1485 . Chr9:83401814..83406570 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A0B0N3L3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_34425 PE=4 SV=1)

HSP 1 Score: 682.174 bits (1759), Expect = 0.000e+0
Identity = 392/392 (100.00%), Postives = 392/392 (100.00%), Query Frame = 1

Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245
            MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSSVIALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEKNAKKSDSVDAKKKAKGDKEAVPEKKAPEKEASDKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK
Sbjct:    1 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSSVIALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEKNAKKSDSVDAKKKAKGDKEAVPEKKAPEKEASDKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 392

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A0D2UW45_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G209900 PE=4 SV=1)

HSP 1 Score: 662.914 bits (1709), Expect = 0.000e+0
Identity = 383/392 (97.70%), Postives = 387/392 (98.72%), Query Frame = 1

Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245
            MATNGTSD+KRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFP DSKAC+GGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSS+IALSTPEKEKLPHVMRWMDYIQNSEDLGA FEKILLEKPVFEPQ+AKAAAKPEVTSSAKGTVQNTKIADKPD EKNAKKSDS DAKKKAKGDKEAVPEKKAPEKEASDKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGE ISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK
Sbjct:    1 MATNGTSDLKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPSDSKACHGGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSSMIALSTPEKEKLPHVMRWMDYIQNSEDLGALFEKILLEKPVFEPQIAKAAAKPEVTSSAKGTVQNTKIADKPDTEKNAKKSDSADAKKKAKGDKEAVPEKKAPEKEASDKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGECISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 392

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A0D2RQS7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G209900 PE=4 SV=1)

HSP 1 Score: 658.677 bits (1698), Expect = 0.000e+0
Identity = 374/392 (95.41%), Postives = 380/392 (96.94%), Query Frame = 1

Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245
            MATNGTSD+KRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFP DSKAC+GGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSS+IALSTPEKEKLPHVMRWMDYIQNSEDLGA FEKILLEKPVFEPQ+AKAAAKPEVTSSAKGTVQNTKIADKPD E   K +   D+ KKAKGDKEAVPEKKAPEKEASDKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGE ISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK
Sbjct:    1 MATNGTSDLKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPSDSKACHGGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSSMIALSTPEKEKLPHVMRWMDYIQNSEDLGALFEKILLEKPVFEPQIAKAAAKPEVTSSAKGTVQNTKIADKPDTE---KNAKKSDSAKKAKGDKEAVPEKKAPEKEASDKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGECISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 389

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A0D2UWF8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G209900 PE=4 SV=1)

HSP 1 Score: 595.119 bits (1533), Expect = 0.000e+0
Identity = 350/361 (96.95%), Postives = 354/361 (98.06%), Query Frame = 1

Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLF 1152
            MATNGTSD+KRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFP DSKAC+GGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSS+IALSTPEKEKLPHVMRWMDYIQNSEDLGA FEKILLEKPVFEPQ+AKAAAKPEVTSSAKGTVQNTKIADKPD EKNAKKSDS DAKKKAKGDKEAVPEKKAPEKEASDKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGE ISFSGIDGKPEDVLNPKKKQLEKITP  F
Sbjct:    1 MATNGTSDLKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPSDSKACHGGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSSMIALSTPEKEKLPHVMRWMDYIQNSEDLGALFEKILLEKPVFEPQIAKAAAKPEVTSSAKGTVQNTKIADKPDTEKNAKKSDSADAKKKAKGDKEAVPEKKAPEKEASDKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGECISFSGIDGKPEDVLNPKKKQLEKITPVCF 361

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A061FTH7_THECC (OB-fold nucleic acid binding domain-containing protein isoform 3 OS=Theobroma cacao GN=TCM_045490 PE=4 SV=1)

HSP 1 Score: 586.645 bits (1511), Expect = 0.000e+0
Identity = 320/392 (81.63%), Postives = 345/392 (88.01%), Query Frame = 1

Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245
            MAT+G +D KR+Q IVSS+CKHFSLDPKAFSS+VPGNDIK LY+NILKSSGKESP+NNDEVMKWIAFA+SFP DSKAC+G LNELN DLA+KSVLLGNGFTPSEADVIVFS +H+SVI LS  EK+KLPHVMRWMDYIQ+ EDLGA F+KILLEKP FEPQ AKAAAKPE+  +AK TVQ+TKIADK  AE NAKKSDS    K  K   +   +    E    DK+  LSVSLLNIQVGLI KAWKHPSADSLLVEEIDVGEAK+RQVVSGLAKYCSPE LTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAKPGE +SFSGIDGKP+DVLNPKKKQLEKITP+LFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK
Sbjct:    1 MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYLNILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTPSEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEPQRAKAAAKPEIDLNAKKTVQSTKIADKSVAEVNAKKSDSGKKAKGDKEAVQEKKKAPETEASDKDKE--LSVSLLNIQVGLICKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCSPEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTAVEPLLPPEGAKPGEHVSFSGIDGKPDDVLNPKKKQLEKITPHLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 390

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A061FRZ3_THECC (OB-fold nucleic acid binding domain-containing protein isoform 1 OS=Theobroma cacao GN=TCM_045490 PE=4 SV=1)

HSP 1 Score: 574.318 bits (1479), Expect = 0.000e+0
Identity = 320/411 (77.86%), Postives = 345/411 (83.94%), Query Frame = 1

Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSG-------------------IDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245
            MAT+G +D KR+Q IVSS+CKHFSLDPKAFSS+VPGNDIK LY+NILKSSGKESP+NNDEVMKWIAFA+SFP DSKAC+G LNELN DLA+KSVLLGNGFTPSEADVIVFS +H+SVI LS  EK+KLPHVMRWMDYIQ+ EDLGA F+KILLEKP FEPQ AKAAAKPE+  +AK TVQ+TKIADK  AE NAKKSDS    K  K   +   +    E    DK+  LSVSLLNIQVGLI KAWKHPSADSLLVEEIDVGEAK+RQVVSGLAKYCSPE LTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAKPGE +SFSG                   IDGKP+DVLNPKKKQLEKITP+LFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK
Sbjct:    1 MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYLNILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTPSEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEPQRAKAAAKPEIDLNAKKTVQSTKIADKSVAEVNAKKSDSGKKAKGDKEAVQEKKKAPETEASDKDKE--LSVSLLNIQVGLICKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCSPEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTAVEPLLPPEGAKPGEHVSFSGHCCLSLLNVWSVLVQLILRIDGKPDDVLNPKKKQLEKITPHLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 409

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A0D2VPV8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G209900 PE=4 SV=1)

HSP 1 Score: 553.903 bits (1426), Expect = 0.000e+0
Identity = 328/337 (97.33%), Postives = 332/337 (98.52%), Query Frame = 1

Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSG 1080
            MATNGTSD+KRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFP DSKAC+GGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSS+IALSTPEKEKLPHVMRWMDYIQNSEDLGA FEKILLEKPVFEPQ+AKAAAKPEVTSSAKGTVQNTKIADKPD EKNAKKSDS DAKKKAKGDKEAVPEKKAPEKEASDKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGE ISFSG
Sbjct:    1 MATNGTSDLKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPSDSKACHGGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSSMIALSTPEKEKLPHVMRWMDYIQNSEDLGALFEKILLEKPVFEPQIAKAAAKPEVTSSAKGTVQNTKIADKPDTEKNAKKSDSADAKKKAKGDKEAVPEKKAPEKEASDKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGECISFSG 337

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A061FSM4_THECC (OB-fold nucleic acid binding domain-containing protein isoform 7 OS=Theobroma cacao GN=TCM_045490 PE=4 SV=1)

HSP 1 Score: 546.969 bits (1408), Expect = 0.000e+0
Identity = 295/392 (75.26%), Postives = 316/392 (80.61%), Query Frame = 1

Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245
            MAT+G +D KR+Q IVSS+CKHFSLDPKAFSS+VPGNDIK LY+NILKSSGKESP+NNDEVMKWIAFA+SFP DSKAC+G LNELN DLA+KSVLLGNGFTPSEADVIVFS +H+SVI LS  EK+KLPHVMRWMDYIQ+ EDLGA F+KILLEKP FEPQ      K  V    K     T+ +DK D E                                      LSVSLLNIQVGLI KAWKHPSADSLLVEEIDVGEAK+RQVVSGLAKYCSPE LTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAKPGE +SFSGIDGKP+DVLNPKKKQLEKITP+LFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK
Sbjct:    1 MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYLNILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTPSEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEPQKKAKGDKEAVQEKKKAP--ETEASDK-DKE--------------------------------------LSVSLLNIQVGLICKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCSPEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTAVEPLLPPEGAKPGEHVSFSGIDGKPDDVLNPKKKQLEKITPHLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 351

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A061FSM1_THECC (OB-fold nucleic acid binding domain-containing protein isoform 2 OS=Theobroma cacao GN=TCM_045490 PE=4 SV=1)

HSP 1 Score: 518.85 bits (1335), Expect = 1.348e-178
Identity = 292/361 (80.89%), Postives = 315/361 (87.26%), Query Frame = 1

Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLF 1152
            MAT+G +D KR+Q IVSS+CKHFSLDPKAFSS+VPGNDIK LY+NILKSSGKESP+NNDEVMKWIAFA+SFP DSKAC+G LNELN DLA+KSVLLGNGFTPSEADVIVFS +H+SVI LS  EK+KLPHVMRWMDYIQ+ EDLGA F+KILLEKP FEPQ AKAAAKPE+  +AK TVQ+TKIADK  AE       S   KK     +    +KKAPE EASDKDKELSVSLLNIQVGLI KAWKHPSADSLLVEEIDVGEAK+RQVVSGLAKYCSPE LTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAKPGE +SFSGIDGKP+DVLNPKKKQLEKITP  F
Sbjct:    1 MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYLNILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTPSEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEPQRAKAAAKPEIDLNAKKTVQSTKIADKSVAE--VNAKKSDSGKKAKGDKEAVQEKKKAPETEASDKDKELSVSLLNIQVGLICKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCSPEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTAVEPLLPPEGAKPGEHVSFSGIDGKPDDVLNPKKKQLEKITPVCF 359

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A061FT10_THECC (OB-fold nucleic acid binding domain-containing protein isoform 4 OS=Theobroma cacao GN=TCM_045490 PE=4 SV=1)

HSP 1 Score: 481.871 bits (1239), Expect = 1.408e-164
Identity = 272/346 (78.61%), Postives = 297/346 (85.84%), Query Frame = 1

Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVL 1107
            MAT+G +D KR+Q IVSS+CKHFSLDPKAFSS+VPGNDIK LY+NILKSSGKESP+NNDEVMKWIAFA+SFP DSKAC+G LNELN DLA+KSVLLGNGFTPSEADVIVFS +H+SVI LS  EK+KLPHVMRWMDYIQ+ EDLGA F+KILLEKP FEPQ AKAAAKPE+  +AK TVQ+TKIADK  AE       S   KK     +    +KKAPE EASDKDKELSVSLLNIQVGLI KAWKHPSADSLLVEEIDVGEAK+RQVVSGLAKYCSPE LTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAKPGE +SFSG+    +D +
Sbjct:    1 MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYLNILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTPSEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEPQRAKAAAKPEIDLNAKKTVQSTKIADKSVAE--VNAKKSDSGKKAKGDKEAVQEKKKAPETEASDKDKELSVSLLNIQVGLICKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCSPEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTAVEPLLPPEGAKPGEHVSFSGLFSGHQDTV 344

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYM_ORYSJ (Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.055e-41
Identity = 84/164 (51.22%), Postives = 113/164 (68.90%), Query Frame = 1

Query:  757 LSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPC-TSSIPKASIK 1245
            ++V+ L+I+VGLIRKA KHP ADSL VEEIDVGE   R VVSGL K+   E++ NR+V ++ N+KP  +R + S  +VL ASNEDHTKVE + PPE A  GE ++F+G  G+PE  LN K K  EK++ +L ++ + VA +K +PF TSAG C   SI    I+
Sbjct:  638 VTVAKLDIRVGLIRKAQKHPDADSLYVEEIDVGEEAPRTVVSGLVKFIPLEEMQNRKVCVLCNLKPVAMRGIKSHAMVLAASNEDHTKVELVEPPESAAVGERVTFAGYSGEPEASLNAKSKTWEKLSADLHSNGELVACYKDVPFTTSAGVCKVKSIASGEIR 801

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYMC_ARATH (Methionine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana GN=At4g13780 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.358e-41
Identity = 82/164 (50.00%), Postives = 116/164 (70.73%), Query Frame = 1

Query:  757 LSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPC-TSSIPKASIK 1245
            ++++ L+I+VG I KA KHP AD+L VEEIDVG  ++R VVSGL KY   E++ NR V ++ N+KP K+RD++S+ +VL AS+ D +KVE + PP+ A  GE ++F G +G+P+DVLNPKKK  E +  +L T E  VA +K +PF TSAG C  SSI   +I+
Sbjct:  634 ITMARLDIRVGKIVKAEKHPKADALYVEEIDVGGGEIRTVVSGLVKYIPLEEMQNRMVCVLCNLKPAKMRDIVSQAMVLAASSSDGSKVELVEPPKTANIGERVTFPGFEGEPDDVLNPKKKVWETLLVDLNTKENLVACYKDVPFTTSAGVCKVSSISNGTIR 797

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: AIMP1_HUMAN (Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.931e-38
Identity = 74/156 (47.44%), Postives = 107/156 (68.59%), Query Frame = 1

Query:  757 LSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPF-MTSAGPCTS 1221
            + VS L++++G I  A KHP ADSL VEE+DVGE   R VVSGL  +   E + NR V+L+ N+KP K+R V+S+ +V+CAS+ +  K+E L PP G+ PG+ I+F    G+P+  LNPKKK  E+I P+L T+++ VAT+KG+PF +   G C +
Sbjct:  150 IDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSPE--KIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRA 303

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: AIMP1_MOUSE (Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Mus musculus GN=Aimp1 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 3.202e-38
Identity = 74/146 (50.68%), Postives = 101/146 (69.18%), Query Frame = 1

Query:  757 LSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPF 1194
            +  S L++++G I  A KHP ADSL VEE+DVGEA  R VVSGL  +   E + NR VVL+ N+KP K+R V+S+ +V+CAS+ +  KVE L PP G+ PG+ I+F    G+P+  LNPKKK  E+I P+L T+ + VAT+KG PF
Sbjct:  148 IDASRLDLRIGCIVTAKKHPDADSLYVEEVDVGEAAPRTVVSGLVNHVPLEQMQNRMVVLLCNLKPAKMRGVLSQAMVMCASSPE--KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGAPF 291

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: AIMP1_CRIGR (Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Cricetulus griseus GN=AIMP1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.904e-36
Identity = 71/146 (48.63%), Postives = 101/146 (69.18%), Query Frame = 1

Query:  757 LSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPF 1194
            + VS L++++G I    KHP ADSL VEE+DVGEA  R V+SGL  +   + + NR VVL+ N+KP K+R ++S+ +V+CAS+ +  KVE L PP G+ PG+ I+F    G+P+  LNPKKK  E+I P+L T+ + VAT+KG PF
Sbjct:  197 VDVSRLDLRIGRIVTVKKHPDADSLYVEEVDVGEAAPRTVISGLVNHVPLDQMQNRMVVLLCNLKPAKMRGILSQAMVMCASSPE--KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGSPF 340

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYYC_XENLA (Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=yars PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.180e-31
Identity = 76/170 (44.71%), Postives = 101/170 (59.41%), Query Frame = 1

Query:  766 SLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNE-DHTKVEPLLPPEGAKPGEPISFSGID-GKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK*KTKTIRG 1269
            SLL+++VG I    +HP ADSL VE +DVGEA  R VVSGL +Y   + L  R VVL+ N+KP K+R + S+G++LCAS E +  +VEPL PP G+ PGE I   G + G+PE  L PKKK  EK+  +    +   A +KG  F+T  G  T            KT+RG
Sbjct:  366 SLLDLRVGKILSVSQHPDADSLYVESVDVGEANPRCVVSGLVQYVPSDQLLGRSVVLLCNLKPQKMRGIESQGMLLCASTEGEQKQVEPLDPPSGSAPGERIYIEGYENGEPEGELKPKKKVFEKLQVDFRISDDLCAQWKGKNFLTKLGSVT-----------CKTLRG 524

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYYC_MOUSE (Tyrosine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Yars PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 2.792e-31
Identity = 72/150 (48.00%), Postives = 100/150 (66.67%), Query Frame = 1

Query:  766 SLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTK-VEPLLPPEGAKPGEPISFSGID-GKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAG 1209
            S L+I+VG I    KHP ADSL VE+IDVGEA+ R VVSGL ++   E+L +R VV++ N+KP K+R V S+G++LCAS E  ++ VEPL PP G+ PGE +   G + G+P++ L PKKK  EK+  +    E+ +A +K   FMT  G
Sbjct:  366 SRLDIRVGKILSVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLG 515

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYYC_HUMAN (Tyrosine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=YARS PE=1 SV=4)

HSP 1 Score: 129.798 bits (325), Expect = 3.070e-31
Identity = 72/150 (48.00%), Postives = 100/150 (66.67%), Query Frame = 1

Query:  766 SLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNED-HTKVEPLLPPEGAKPGEPISFSGID-GKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAG 1209
            S L+I+VG I    KHP ADSL VE+IDVGEA+ R VVSGL ++   E+L +R VV++ N+KP K+R V S+G++LCAS E  + +VEPL PP G+ PGE +   G + G+P++ L PKKK  EK+  +    E+ +A +K   FMT  G
Sbjct:  366 SRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLG 515

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYYC_PONAB (Tyrosine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=YARS PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 3.783e-31
Identity = 72/150 (48.00%), Postives = 100/150 (66.67%), Query Frame = 1

Query:  766 SLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNED-HTKVEPLLPPEGAKPGEPISFSGID-GKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAG 1209
            S L+I+VG I    KHP ADSL VE+IDVGEA+ R VVSGL ++   E+L +R VV++ N+KP K+R V S+G++LCAS E  + +VEPL PP G+ PGE +   G + G+P++ L PKKK  EK+  +    E+ +A +K   FMT  G
Sbjct:  366 SRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLG 515

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYYC_BOVIN (Tyrosine--tRNA ligase, cytoplasmic OS=Bos taurus GN=YARS PE=2 SV=4)

HSP 1 Score: 129.028 bits (323), Expect = 6.085e-31
Identity = 71/153 (46.41%), Postives = 101/153 (66.01%), Query Frame = 1

Query:  766 SLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNED-HTKVEPLLPPEGAKPGEPISFSGID-GKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCT 1218
            S L+I+VG +    KHP ADSL VE+IDVGEA+ R VVSGL ++   E+L +R VV++ N+KP K+R V S+G++LCAS E  + KVEPL PP G+ PGE +   G + G+P++ L PKKK  EK+  +    ++ +A +K   FMT  G  +
Sbjct:  366 SRLDIRVGKVISVDKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVKSQGMLLCASVEGVNRKVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQADFKISDEYIAQWKQTNFMTKMGSVS 518

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0N3L3_GOSAR	0.000e+0	100.00	Uncharacterized protein OS=Gossypium arboreum GN=F...	[more]
A0A0D2UW45_GOSRA	0.000e+0	97.70	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2RQS7_GOSRA	0.000e+0	95.41	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2UWF8_GOSRA	0.000e+0	96.95	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061FTH7_THECC	0.000e+0	81.63	OB-fold nucleic acid binding domain-containing pro...	[more]
A0A061FRZ3_THECC	0.000e+0	77.86	OB-fold nucleic acid binding domain-containing pro...	[more]
A0A0D2VPV8_GOSRA	0.000e+0	97.33	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061FSM4_THECC	0.000e+0	75.26	OB-fold nucleic acid binding domain-containing pro...	[more]
A0A061FSM1_THECC	1.348e-178	80.89	OB-fold nucleic acid binding domain-containing pro...	[more]
A0A061FT10_THECC	1.408e-164	78.61	OB-fold nucleic acid binding domain-containing pro...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
SYM_ORYSJ	1.055e-41	51.22	Probable methionine--tRNA ligase OS=Oryza sativa s...	[more]
SYMC_ARATH	8.358e-41	50.00	Methionine--tRNA ligase, cytoplasmic OS=Arabidopsi...	[more]
AIMP1_HUMAN	1.931e-38	47.44	Aminoacyl tRNA synthase complex-interacting multif...	[more]
AIMP1_MOUSE	3.202e-38	50.68	Aminoacyl tRNA synthase complex-interacting multif...	[more]
AIMP1_CRIGR	2.904e-36	48.63	Aminoacyl tRNA synthase complex-interacting multif...	[more]
SYYC_XENLA	1.180e-31	44.71	Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus laev...	[more]
SYYC_MOUSE	2.792e-31	48.00	Tyrosine--tRNA ligase, cytoplasmic OS=Mus musculus...	[more]
SYYC_HUMAN	3.070e-31	48.00	Tyrosine--tRNA ligase, cytoplasmic OS=Homo sapiens...	[more]
SYYC_PONAB	3.783e-31	48.00	Tyrosine--tRNA ligase, cytoplasmic OS=Pongo abelii...	[more]
SYYC_BOVIN	6.085e-31	46.41	Tyrosine--tRNA ligase, cytoplasmic OS=Bos taurus G...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002547	tRNA-binding domain	PFAM	PF01588	tRNA_bind	coord: 237..331 e-value: 3.7E-26 score: 90.9
IPR002547	tRNA-binding domain	PROSITE	PS50886	TRBD	coord: 231..334 score: 29.879
IPR010987	Glutathione S-transferase, C-terminal-like	GENE3D	1.20.1050.10		coord: 82..150 e-value: 8.0E-5 score: 21.8
IPR010987	Glutathione S-transferase, C-terminal-like	SUPERFAMILY	47616	GST C-terminal domain-like	coord: 49..147
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	2.40.50.140		coord: 232..386 e-value: 9.2E-43 score: 145.4
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 231..383
None	No IPR available	PANTHER	PTHR11586	FAMILY NOT NAMED	coord: 4..392
None	No IPR available	PANTHER	PTHR11586:SF1	NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN	coord: 4..392

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0020566 ID=g.arboreum_cottongen_reftransV1_0020566; Name=g.arboreum_cottongen_reftransV1_0020566; organism=Gossypium arboreum; type=contig; length=1485bp
CAAAAACCCTACGTCTGTTTCTTGGTCTAAATAGCTCTTCAAGGGAGAAA
AAGAGAAGAAAACCCAGACATGGCAACCAATGGAACCAGTGATATCAAAA
GGAAGCAAGGAATAGTATCATCTCTTTGCAAGCACTTCTCTTTGGATCCT
AAGGCTTTTTCAAGTCAAGTCCCTGGAAATGATATTAAGACCCTTTACAT
AAACATTTTGAAGTCATCAGGGAAGGAGTCACCGCAAAATAACGATGAGG
TGATGAAGTGGATAGCTTTTGCAGACAGCTTTCCTGGTGATTCTAAGGCA
TGCTATGGTGGTTTGAATGAATTAAACACTGACTTGGCTAAAAAATCTGT
ACTTTTGGGCAATGGATTTACACCCTCAGAAGCCGATGTTATTGTTTTTT
CAGTCATACATAGTTCAGTGATTGCCCTTTCAACTCCAGAGAAGGAGAAA
TTGCCACATGTGATGCGATGGATGGATTATATCCAGAATAGTGAGGATCT
TGGTGCACATTTTGAGAAGATATTGCTGGAGAAGCCTGTTTTTGAGCCTC
AGATGGCAAAAGCTGCAGCTAAGCCAGAAGTAACTTCAAGTGCTAAAGGG
ACTGTTCAAAACACAAAAATTGCAGACAAGCCAGATGCAGAAAAAAATGC
AAAGAAAAGTGATTCCGTGGATGCCAAGAAAAAGGCTAAGGGAGATAAGG
AAGCTGTTCCAGAGAAGAAAGCACCTGAAAAAGAAGCATCTGATAAAGAC
AAAGAACTCAGTGTCAGTTTACTGAATATACAGGTTGGTCTTATACGTAA
AGCATGGAAACATCCATCTGCTGATAGTTTACTGGTAGAGGAGATAGATG
TCGGAGAGGCTAAAGTACGACAGGTTGTTAGTGGATTGGCCAAGTATTGC
AGTCCAGAAGACTTGACGAATCGTCGTGTTGTGCTGATTACAAATGTAAA
ACCTGGAAAGCTACGAGATGTGATGTCAGAGGGACTGGTGCTTTGTGCTT
CTAATGAAGATCATACCAAGGTAGAGCCATTACTGCCCCCTGAAGGTGCT
AAACCTGGCGAGCCCATTTCATTTTCAGGGATCGATGGAAAGCCAGAAGA
TGTCCTAAATCCAAAGAAGAAGCAGTTGGAGAAAATAACACCGAATCTTT
TCACTGATGAGAAGGGTGTGGCCACATTTAAAGGTATTCCATTTATGACC
TCAGCAGGGCCATGCACATCTTCCATTCCTAAAGCTAGCATCAAATGAAA
GACAAAAACGATACGTGGACGCACATGTTACCCTTTGTAAGGTTCCAATT
GTAGTTCTAGCAGTCAACATTGCTTGCTGCTGGAACAAAAAAGAGCCCTT
GTAAGATGCAATTGTTTTTTTTTTAACTCACTGAATTGTCGTTCCTTGTC
CCTCACAATCTAACATCAAAGAATTTTGTTTCTAGTACATTCATTTGGAA
TTTGGTGATCCAGAAAATTAAGCAAAAAATATTTT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR002547	tRNA-bd_dom
IPR010987	Glutathione-S-Trfase_C-like
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0000049	tRNA binding

Search form

g.arboreum_cottongen_reftransV1_0020566, g.arboreum_cottongen_reftransV1_0020566 (contig) Gossypium arboreum

Pages

Pages