g.arboreum_cottongen_reftransV1_0008555, g.arboreum_cottongen_reftransV1_0008555 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008555
Unique Nameg.arboreum_cottongen_reftransV1_0008555
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length967
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A0B0N4Z0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_14749 PE=4 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.828e-90
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = -2
Query:  310 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 822
            VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATGLGVGSFLFLLLSQILIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGVFAAGAAFAFLTAVVSELYYVSYSKANDATVNYGKDTGVRMGNL
Sbjct:   10 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATGLGVGSFLFLLLSQILIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGVFAAGAAFAFLTAVVSELYYVSYSKANDATVNYGKDTGVRMGNL 180          
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A0D2QHU4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G170300 PE=4 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 4.215e-90
Identity = 169/171 (98.83%), Postives = 170/171 (99.42%), Query Frame = -2
Query:  310 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 822
            VFVIDLIAFALAVAAEQRRSTA+VGNNGKESYCVYDEDIATGLGVGSFLFLLLSQILIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGVF AGAAFAFLTAVVSELYYVSYSKANDATVNYGKDTGVRMGNL
Sbjct:   10 VFVIDLIAFALAVAAEQRRSTATVGNNGKESYCVYDEDIATGLGVGSFLFLLLSQILIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGVFGAGAAFAFLTAVVSELYYVSYSKANDATVNYGKDTGVRMGNL 180          
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A061GFH7_THECC (DnaJ subfamily C member 22 OS=Theobroma cacao GN=TCM_029919 PE=4 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.384e-78
Identity = 148/171 (86.55%), Postives = 161/171 (94.15%), Query Frame = -2
Query:  310 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 822
            VFVIDLIAF LAVAAEQRRSTA+V N+G ESYCVYD+DIATGLGVGSFLFLLLSQILIMV SRCLCCGKAMRPSGSRAWA+VLFITCW+FFFIAEVCLL GSVRNAYHTKYKNLLN+PP+CATLRKGVF AGAAF FLTA+VSEL+YVSYSKAN+   N+G+DTGVRMGN+
Sbjct:   10 VFVIDLIAFGLAVAAEQRRSTAAVANDGNESYCVYDKDIATGLGVGSFLFLLLSQILIMVASRCLCCGKAMRPSGSRAWAIVLFITCWVFFFIAEVCLLLGSVRNAYHTKYKNLLNNPPTCATLRKGVFGAGAAFVFLTAIVSELFYVSYSKANELQANHGRDTGVRMGNI 180          
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A0D2T1A7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G025500 PE=4 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.264e-78
Identity = 153/173 (88.44%), Postives = 162/173 (93.64%), Query Frame = -2
Query:  310 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKA--NDATVNYGKDTGVRMGNL 822
            VFVIDLIAF LAVAAEQRRSTA+VGNNGKESYCVYD+DIATGLGVGSFLFLLL QILIMV SRCLCCGKAM+PSGSRAWAVVLFITCW+FF IAEVCLLAGSVRNAYHTKYKNLL++PPSCATLRKGVF AGAAF FLTAVVSELYYVSYSKA  ++   NYG+DTGVRMGNL
Sbjct:   10 VFVIDLIAFGLAVAAEQRRSTATVGNNGKESYCVYDKDIATGLGVGSFLFLLLGQILIMVASRCLCCGKAMKPSGSRAWAVVLFITCWVFFLIAEVCLLAGSVRNAYHTKYKNLLDNPPSCATLRKGVFGAGAAFIFLTAVVSELYYVSYSKAARDEKPNNYGRDTGVRMGNL 182          
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A0B0PS56_GOSAR (1,3-beta-glucan synthase component bgs1 OS=Gossypium arboreum GN=F383_15607 PE=4 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 8.848e-75
Identity = 148/173 (85.55%), Postives = 159/173 (91.91%), Query Frame = -2
Query:  310 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKA--NDATVNYGKDTGVRMGNL 822
            VFVIDLIAF LAVAAEQRRSTA+V NNG ES+CVYD+DIATGLGVGSFLFLL+ QILIMV SRCLCCGKAM+PSGSRAWAVVLFITCW+FF IAEVCLLAGSVRNAYHTKYKNLL++PPSCATLRKGVF AGAAF FLTAVVSELYYVSYSKA  ++   NY +DTGVRMGNL
Sbjct:   10 VFVIDLIAFGLAVAAEQRRSTATVHNNGNESFCVYDKDIATGLGVGSFLFLLVGQILIMVASRCLCCGKAMKPSGSRAWAVVLFITCWVFFLIAEVCLLAGSVRNAYHTKYKNLLDNPPSCATLRKGVFGAGAAFVFLTAVVSELYYVSYSKAARDEKPNNYARDTGVRMGNL 182          
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A059CD35_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00653 PE=4 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 5.798e-62
Identity = 125/172 (72.67%), Postives = 142/172 (82.56%), Query Frame = -2
Query:  310 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLL-NDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 822
            VFV+DLIAFALAVAAEQRR+TA++  +  E YC YD DIATGLGVGS LFLL SQ+LI+  SRCLCCGKA+ PSGSR WA+VLFIT W+FF IAE CLLAGSVRNAYHTKY  L+ ++PPSC TLRKGVF  GAAF   T +VSELYYV+YSKAN+A   Y +DTGVRMGNL
Sbjct:   10 VFVLDLIAFALAVAAEQRRNTATIVEDASEKYCHYDSDIATGLGVGSLLFLLASQLLIVAVSRCLCCGKALLPSGSRTWAIVLFITSWVFFIIAEACLLAGSVRNAYHTKYTTLISSNPPSCETLRKGVFGTGAAFIIFTGIVSELYYVNYSKANEAVAPYTRDTGVRMGNL 181          
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: M5WVG4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012175mg PE=4 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 5.177e-60
Identity = 123/172 (71.51%), Postives = 138/172 (80.23%), Query Frame = -2
Query:  310 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLL-NDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 822
            VFV DLIAFALAVAAEQRRS+A +      SYCVYD DIATGLG GSFLFLL SQ+LIM  SRCLCCGKA+RPSGSR+WA++LFITCW+FF IAE CLLAGSVRNAYHTKY+ +  N   SC TLRKG+F AGAAF   T + SELYYVSYS+AN+    Y +DTGVRM NL
Sbjct:   10 VFVSDLIAFALAVAAEQRRSSAKIQTLANSSYCVYDSDIATGLGAGSFLFLLASQVLIMGVSRCLCCGKALRPSGSRSWAIMLFITCWVFFLIAEACLLAGSVRNAYHTKYRTVFTNGKLSCETLRKGIFGAGAAFVVFTGIFSELYYVSYSRANELETPYSRDTGVRMQNL 181          
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A067JDU1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21404 PE=4 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.746e-59
Identity = 123/165 (74.55%), Postives = 136/165 (82.42%), Query Frame = -2
Query:  310 IAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 804
            IAFALAVAAEQRR+TA+V      SYC YD DIATGLGVG+ L L+ SQILIM+ SRCLCCGKAMRPSGSR WA+VLFITCW+FFFIAEVCLLAGSVRNAYHTKY  L  + PSC  LRKGVF AGAAF  LT +VSELYYVS+S+AND   +Y +D GVRMGNL
Sbjct:   16 IAFALAVAAEQRRNTATVQKQVNYSYCQYDSDIATGLGVGALLSLMASQILIMIASRCLCCGKAMRPSGSRTWAIVLFITCWVFFFIAEVCLLAGSVRNAYHTKYY-LSENSPSCRQLRKGVFGAGAAFVVLTGIVSELYYVSHSRANDGQPSYNRDAGVRMGNL 179          
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: B9RZ49_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0935130 PE=4 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.272e-58
Identity = 120/171 (70.18%), Postives = 138/171 (80.70%), Query Frame = -2
Query:  310 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 822
            VFV DLIAF LAVAAEQRR+TA+V   G  +YC YD DIATGLGVG+ LFLL SQ+LIM  SRCLCCG+A+RPSGSR WA+VLFITCW+FF IAEVCLLA S++NAYHTK+  L    P+C  LRKGVF AGAAF   T ++SELYYVSYS+AN    +YG+DTGVRMGNL
Sbjct:   10 VFVFDLIAFGLAVAAEQRRNTATVQKQGDYNYCQYDSDIATGLGVGALLFLLASQLLIMAASRCLCCGRAIRPSGSRTWAIVLFITCWVFFIIAEVCLLAASIQNAYHTKFY-LARFSPNCRELRKGVFGAGAAFVIFTGIISELYYVSYSRANGGQASYGRDTGVRMGNL 179          
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A067JW17_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20958 PE=4 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 4.731e-58
Identity = 120/173 (69.36%), Postives = 139/173 (80.35%), Query Frame = -2
Query:  313 VFVIDLIAFALAVAAEQRRSTASVGNNGK--ESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLND-PPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGN 822
            VF+ DLIAF LAVAAEQRRSTA +  + +   +YCVYD DIATG GVG+FLFL++SQ++IMV S+C CCGK + P GSRAWAV+LFITCW+FFFIAEVCLLAGSVRNAYHTKY+ + +D PP C TLRKGVF AGAAF   TA+VSE YYVSYSKA D    YG +TGV MG 
Sbjct:   10 VFIFDLIAFGLAVAAEQRRSTAVIKQDSEVNYNYCVYDSDIATGYGVGAFLFLMVSQVIIMVASQCFCCGKPLNPGGSRAWAVILFITCWVFFFIAEVCLLAGSVRNAYHTKYRTVFSDNPPDCQTLRKGVFGAGAAFTLFTAIVSEFYYVSYSKARDGFKPYGGETGVGMGT 182          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0N4Z0_GOSAR1.828e-90100.00Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2QHU4_GOSRA4.215e-9098.83Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061GFH7_THECC2.384e-7886.55DnaJ subfamily C member 22 OS=Theobroma cacao GN=T... [more]
A0A0D2T1A7_GOSRA3.264e-7888.44Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0PS56_GOSAR8.848e-7585.551,3-beta-glucan synthase component bgs1 OS=Gossypi... [more]
A0A059CD35_EUCGR5.798e-6272.67Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
M5WVG4_PRUPE5.177e-6071.51Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A067JDU1_JATCU1.746e-5974.55Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9RZ49_RICCO1.272e-5870.18Putative uncharacterized protein OS=Ricinus commun... [more]
A0A067JW17_JATCU4.731e-5869.36Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009606Protein of unknown function DUF1218PFAMPF06749DUF1218coord: 56..150
e-value: 3.8E-28
score: 97.7
NoneNo IPR availablePANTHERPTHR31769:SF16SUBFAMILY NOT NAMEDcoord: 1..180
NoneNo IPR availablePANTHERPTHR31769FAMILY NOT NAMEDcoord: 1..180
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..47
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 90..116
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 117..135
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 136..157
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 158..180
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 48..69
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 70..89
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..21
score: 0.735
NoneNo IPR availableTMHMMTMhelixcoord: 137..159
NoneNo IPR availableTMHMMTMhelixcoord: 5..24
NoneNo IPR availableTMHMMTMhelixcoord: 90..112
NoneNo IPR availableTMHMMTMhelixcoord: 48..70

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008555 ID=g.arboreum_cottongen_reftransV1_0008555; Name=g.arboreum_cottongen_reftransV1_0008555; organism=Gossypium arboreum; type=contig; length=967bp
CTTAAAAACTCTTTTATAAATTCCCATGGAGATTACTATATATTATTGAA
AAAATACACTCTCAAATGTCACTCTAATCACTTCACATACTAAAAAAAAT
GAAACACTAAGCGCCTAGAAAACATGCAAAATGCTTAGCCAGAAACCTGC
AACGTAAAGTGGGAAAAACACAAGTACATGTCCATGTCCATGGTAAGACG
CATGTATACTAAATCACACATGCTGTAACCTAAGTTGTCTACAACAGAAA
CATTAAGGTCAATCAACAATGAATAAAATTTTATGACCGCCTCTGAGCAT
ATCCATCTACAGGTTTCCCATCCTCACTCCTGTGTCTTTGCCGTAGTTAA
CTGTTGCATCATTAGCCTTCGAATAACTCACATAGTAAAGCTCAGAGACT
ACGGCTGTTAGGAAAGCAAATGCAGCCCCAGCGGCAAAGACACCCTTTCT
CAGTGTCGCACACGATGGGGGATCATTTAAGAGATTCTTGTACTTGGTGT
GATAAGCATTCCGCACTGACCCTGCCAGCAGGCATACCTCCGCAATGAAA
AAGAACAACCAACAAGTGATGAACAGAACAACTGCCCATGCTCTAGATCC
ACTTGGTCTCATGGCCTTTCCACAGCATAAGCACCGACTTGTCACCATTA
TTAGTATCTGACTAAGCAGAAGGAATAGGAATGAACCCACACCCAAACCA
GTTGCAATATCCTCATCATAAACACAATAACTTTCTTTCCCATTATTGCC
AACAGAGGCAGTACTTCTCCTTTGCTCAGCAGCAACAGCAAGGGCGAAAG
CAATCAGATCAATCACAAAAACCAGAGCCAGTAGCAAGGTTGAAGCCATA
GTTCAAGCAAACAAAGAAGAAGGAAAATCTCGAGAAAATATGAGCCAGAG
AAGCAAAAAGACGCACACAAAAACAGTATTAATCAAAAGCGTTAAGCAAG
TGGAAACAATGCTGAAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR009606DEAL/Modifying_wall_lignin1/2