g.arboreum_cottongen_reftransV1_0008555, g.arboreum_cottongen_reftransV1_0008555 (contig) Gossypium arboreum
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A0B0N4Z0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_14749 PE=4 SV=1) HSP 1 Score: 279.641 bits (714), Expect = 1.828e-90 Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = -2 Query: 310 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 822 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATGLGVGSFLFLLLSQILIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGVFAAGAAFAFLTAVVSELYYVSYSKANDATVNYGKDTGVRMGNL Sbjct: 10 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATGLGVGSFLFLLLSQILIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGVFAAGAAFAFLTAVVSELYYVSYSKANDATVNYGKDTGVRMGNL 180
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A0D2QHU4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G170300 PE=4 SV=1) HSP 1 Score: 278.87 bits (712), Expect = 4.215e-90 Identity = 169/171 (98.83%), Postives = 170/171 (99.42%), Query Frame = -2 Query: 310 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 822 VFVIDLIAFALAVAAEQRRSTA+VGNNGKESYCVYDEDIATGLGVGSFLFLLLSQILIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGVF AGAAFAFLTAVVSELYYVSYSKANDATVNYGKDTGVRMGNL Sbjct: 10 VFVIDLIAFALAVAAEQRRSTATVGNNGKESYCVYDEDIATGLGVGSFLFLLLSQILIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGVFGAGAAFAFLTAVVSELYYVSYSKANDATVNYGKDTGVRMGNL 180
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A061GFH7_THECC (DnaJ subfamily C member 22 OS=Theobroma cacao GN=TCM_029919 PE=4 SV=1) HSP 1 Score: 248.825 bits (634), Expect = 2.384e-78 Identity = 148/171 (86.55%), Postives = 161/171 (94.15%), Query Frame = -2 Query: 310 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 822 VFVIDLIAF LAVAAEQRRSTA+V N+G ESYCVYD+DIATGLGVGSFLFLLLSQILIMV SRCLCCGKAMRPSGSRAWA+VLFITCW+FFFIAEVCLL GSVRNAYHTKYKNLLN+PP+CATLRKGVF AGAAF FLTA+VSEL+YVSYSKAN+ N+G+DTGVRMGN+ Sbjct: 10 VFVIDLIAFGLAVAAEQRRSTAAVANDGNESYCVYDKDIATGLGVGSFLFLLLSQILIMVASRCLCCGKAMRPSGSRAWAIVLFITCWVFFFIAEVCLLLGSVRNAYHTKYKNLLNNPPTCATLRKGVFGAGAAFVFLTAIVSELFYVSYSKANELQANHGRDTGVRMGNI 180
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A0D2T1A7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G025500 PE=4 SV=1) HSP 1 Score: 248.44 bits (633), Expect = 3.264e-78 Identity = 153/173 (88.44%), Postives = 162/173 (93.64%), Query Frame = -2 Query: 310 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKA--NDATVNYGKDTGVRMGNL 822 VFVIDLIAF LAVAAEQRRSTA+VGNNGKESYCVYD+DIATGLGVGSFLFLLL QILIMV SRCLCCGKAM+PSGSRAWAVVLFITCW+FF IAEVCLLAGSVRNAYHTKYKNLL++PPSCATLRKGVF AGAAF FLTAVVSELYYVSYSKA ++ NYG+DTGVRMGNL Sbjct: 10 VFVIDLIAFGLAVAAEQRRSTATVGNNGKESYCVYDKDIATGLGVGSFLFLLLGQILIMVASRCLCCGKAMKPSGSRAWAVVLFITCWVFFLIAEVCLLAGSVRNAYHTKYKNLLDNPPSCATLRKGVFGAGAAFIFLTAVVSELYYVSYSKAARDEKPNNYGRDTGVRMGNL 182
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A0B0PS56_GOSAR (1,3-beta-glucan synthase component bgs1 OS=Gossypium arboreum GN=F383_15607 PE=4 SV=1) HSP 1 Score: 239.58 bits (610), Expect = 8.848e-75 Identity = 148/173 (85.55%), Postives = 159/173 (91.91%), Query Frame = -2 Query: 310 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKA--NDATVNYGKDTGVRMGNL 822 VFVIDLIAF LAVAAEQRRSTA+V NNG ES+CVYD+DIATGLGVGSFLFLL+ QILIMV SRCLCCGKAM+PSGSRAWAVVLFITCW+FF IAEVCLLAGSVRNAYHTKYKNLL++PPSCATLRKGVF AGAAF FLTAVVSELYYVSYSKA ++ NY +DTGVRMGNL Sbjct: 10 VFVIDLIAFGLAVAAEQRRSTATVHNNGNESFCVYDKDIATGLGVGSFLFLLVGQILIMVASRCLCCGKAMKPSGSRAWAVVLFITCWVFFLIAEVCLLAGSVRNAYHTKYKNLLDNPPSCATLRKGVFGAGAAFVFLTAVVSELYYVSYSKAARDEKPNNYARDTGVRMGNL 182
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A059CD35_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00653 PE=4 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 5.798e-62 Identity = 125/172 (72.67%), Postives = 142/172 (82.56%), Query Frame = -2 Query: 310 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLL-NDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 822 VFV+DLIAFALAVAAEQRR+TA++ + E YC YD DIATGLGVGS LFLL SQ+LI+ SRCLCCGKA+ PSGSR WA+VLFIT W+FF IAE CLLAGSVRNAYHTKY L+ ++PPSC TLRKGVF GAAF T +VSELYYV+YSKAN+A Y +DTGVRMGNL Sbjct: 10 VFVLDLIAFALAVAAEQRRNTATIVEDASEKYCHYDSDIATGLGVGSLLFLLASQLLIVAVSRCLCCGKALLPSGSRTWAIVLFITSWVFFIIAEACLLAGSVRNAYHTKYTTLISSNPPSCETLRKGVFGTGAAFIIFTGIVSELYYVNYSKANEAVAPYTRDTGVRMGNL 181
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: M5WVG4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012175mg PE=4 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 5.177e-60 Identity = 123/172 (71.51%), Postives = 138/172 (80.23%), Query Frame = -2 Query: 310 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLL-NDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 822 VFV DLIAFALAVAAEQRRS+A + SYCVYD DIATGLG GSFLFLL SQ+LIM SRCLCCGKA+RPSGSR+WA++LFITCW+FF IAE CLLAGSVRNAYHTKY+ + N SC TLRKG+F AGAAF T + SELYYVSYS+AN+ Y +DTGVRM NL Sbjct: 10 VFVSDLIAFALAVAAEQRRSSAKIQTLANSSYCVYDSDIATGLGAGSFLFLLASQVLIMGVSRCLCCGKALRPSGSRSWAIMLFITCWVFFLIAEACLLAGSVRNAYHTKYRTVFTNGKLSCETLRKGIFGAGAAFVVFTGIFSELYYVSYSRANELETPYSRDTGVRMQNL 181
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A067JDU1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21404 PE=4 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 1.746e-59 Identity = 123/165 (74.55%), Postives = 136/165 (82.42%), Query Frame = -2 Query: 310 IAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 804 IAFALAVAAEQRR+TA+V SYC YD DIATGLGVG+ L L+ SQILIM+ SRCLCCGKAMRPSGSR WA+VLFITCW+FFFIAEVCLLAGSVRNAYHTKY L + PSC LRKGVF AGAAF LT +VSELYYVS+S+AND +Y +D GVRMGNL Sbjct: 16 IAFALAVAAEQRRNTATVQKQVNYSYCQYDSDIATGLGVGALLSLMASQILIMIASRCLCCGKAMRPSGSRTWAIVLFITCWVFFFIAEVCLLAGSVRNAYHTKYY-LSENSPSCRQLRKGVFGAGAAFVVLTGIVSELYYVSHSRANDGQPSYNRDAGVRMGNL 179
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: B9RZ49_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0935130 PE=4 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 1.272e-58 Identity = 120/171 (70.18%), Postives = 138/171 (80.70%), Query Frame = -2 Query: 310 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 822 VFV DLIAF LAVAAEQRR+TA+V G +YC YD DIATGLGVG+ LFLL SQ+LIM SRCLCCG+A+RPSGSR WA+VLFITCW+FF IAEVCLLA S++NAYHTK+ L P+C LRKGVF AGAAF T ++SELYYVSYS+AN +YG+DTGVRMGNL Sbjct: 10 VFVFDLIAFGLAVAAEQRRNTATVQKQGDYNYCQYDSDIATGLGVGALLFLLASQLLIMAASRCLCCGRAIRPSGSRTWAIVLFITCWVFFIIAEVCLLAASIQNAYHTKFY-LARFSPNCRELRKGVFGAGAAFVIFTGIISELYYVSYSRANGGQASYGRDTGVRMGNL 179
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A067JW17_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20958 PE=4 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 4.731e-58 Identity = 120/173 (69.36%), Postives = 139/173 (80.35%), Query Frame = -2 Query: 313 VFVIDLIAFALAVAAEQRRSTASVGNNGK--ESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLND-PPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGN 822 VF+ DLIAF LAVAAEQRRSTA + + + +YCVYD DIATG GVG+FLFL++SQ++IMV S+C CCGK + P GSRAWAV+LFITCW+FFFIAEVCLLAGSVRNAYHTKY+ + +D PP C TLRKGVF AGAAF TA+VSE YYVSYSKA D YG +TGV MG Sbjct: 10 VFIFDLIAFGLAVAAEQRRSTAVIKQDSEVNYNYCVYDSDIATGYGVGAFLFLMVSQVIIMVASQCFCCGKPLNPGGSRAWAVILFITCWVFFFIAEVCLLAGSVRNAYHTKYRTVFSDNPPDCQTLRKGVFGAGAAFTLFTAIVSEFYYVSYSKARDGFKPYGGETGVGMGT 182 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0008555 ID=g.arboreum_cottongen_reftransV1_0008555; Name=g.arboreum_cottongen_reftransV1_0008555; organism=Gossypium arboreum; type=contig; length=967bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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