g.arboreum_cottongen_reftransV1_0008826, g.arboreum_cottongen_reftransV1_0008826 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0008826
Unique Name	g.arboreum_cottongen_reftransV1_0008826
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	331

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr2	chromosome	g.arboreum_cottongen_reftransV1_0008826:1..331 . Chr2:74909857..74910377 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A0B0N9F9_GOSAR (Potassium transporter 3 OS=Gossypium arboreum GN=F383_09678 PE=4 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.911e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = -2

Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RNLQSPTVKRFAERHKKAKTALLLLVLFGTCLLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL
Sbjct:   71 RNLQSPTVKRFAERHKKAKTALLLLVLFGTCLLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 180

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A0B0NE23_GOSAR (Potassium transporter 3 OS=Gossypium arboreum GN=F383_09678 PE=4 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.270e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = -2

Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RNLQSPTVKRFAERHKKAKTALLLLVLFGTCLLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL
Sbjct:   87 RNLQSPTVKRFAERHKKAKTALLLLVLFGTCLLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 196

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A0D2ML10_GOSRA (Potassium transporter OS=Gossypium raimondii GN=B456_003G084100 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 2.693e-52
Identity = 107/110 (97.27%), Postives = 107/110 (97.27%), Query Frame = -2

Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN QS TVKRFAERHKKAKTALLLLVLFGTCLLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLS AAIGVYNIL
Sbjct:  122 RNPQSLTVKRFAERHKKAKTALLLLVLFGTCLLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSIAAIGVYNIL 231

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A0D2QQ85_GOSRA (Potassium transporter OS=Gossypium raimondii GN=B456_003G084100 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.035e-51
Identity = 107/110 (97.27%), Postives = 107/110 (97.27%), Query Frame = -2

Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN QS TVKRFAERHKKAKTALLLLVLFGTCLLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLS AAIGVYNIL
Sbjct:  122 RNPQSLTVKRFAERHKKAKTALLLLVLFGTCLLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSIAAIGVYNIL 231

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A061G6R4_THECC (Potassium transporter OS=Theobroma cacao GN=TCM_016366 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.872e-41
Identity = 91/110 (82.73%), Postives = 104/110 (94.55%), Query Frame = -2

Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RNLQS + K+FAERHKK KTALLLLVLFGTCL+ICVGFLTPA+S+RS+IEG+KVRS+ LHYGVV++IACILLVGLFVLQHRGTYRVAFMFAPI+ILWSL  AAIG+YNI+
Sbjct:  123 RNLQSSSAKKFAERHKKLKTALLLLVLFGTCLVICVGFLTPAMSVRSSIEGLKVRSNNLHYGVVVVIACILLVGLFVLQHRGTYRVAFMFAPILILWSLCIAAIGLYNII 232

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A061G5M9_THECC (Potassium transporter OS=Theobroma cacao GN=TCM_016366 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.896e-41
Identity = 91/110 (82.73%), Postives = 104/110 (94.55%), Query Frame = -2

Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RNLQS + K+FAERHKK KTALLLLVLFGTCL+ICVGFLTPA+S+RS+IEG+KVRS+ LHYGVV++IACILLVGLFVLQHRGTYRVAFMFAPI+ILWSL  AAIG+YNI+
Sbjct:  122 RNLQSSSAKKFAERHKKLKTALLLLVLFGTCLVICVGFLTPAMSVRSSIEGLKVRSNNLHYGVVVVIACILLVGLFVLQHRGTYRVAFMFAPILILWSLCIAAIGLYNII 231

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: B9RCK1_RICCO (Potassium transporter OS=Ricinus communis GN=RCOM_1689440 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.397e-30
Identity = 68/110 (61.82%), Postives = 91/110 (82.73%), Query Frame = -2

Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN+     K+  ER KK KTALLL+VLFG  ++I +G LTPAIS+ S+IEG++++++ LH+G+V++IACI+L+GLFVLQ+RGT+RVAFMFAPIVILW LS A IG YNI+
Sbjct:  122 RNVAPSQSKKVVERRKKTKTALLLVVLFGASMVIAIGVLTPAISVLSSIEGLQLQANNLHHGMVVLIACIVLIGLFVLQYRGTHRVAFMFAPIVILWLLSIAIIGAYNII 231

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A0A7RTG8_PRUPE (Potassium transporter OS=Prunus persica GN=KUP4 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.129e-28
Identity = 67/111 (60.36%), Postives = 88/111 (79.28%), Query Frame = -2

Query:    1 NLQSPT--VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 327
            N   PT  +K F ERHK A+T LLLLVLFG  ++ICVG LTPAIS+ +++EG+K ++ +LH  VV++IACILLV LFVLQHRG +++AF+F PIVILW L  AA+G+YNI+
Sbjct:   48 NTNRPTSPLKGFIERHKSAQTCLLLLVLFGASMVICVGILTPAISVFASVEGLKFQAKDLHNSVVVLIACILLVALFVLQHRGIHKLAFIFTPIVILWVLLVAAVGIYNII 158

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: M5WDQ0_PRUPE (Potassium transporter (Fragment) OS=Prunus persica GN=PRUPE_ppa022284mg PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.331e-28
Identity = 67/111 (60.36%), Postives = 88/111 (79.28%), Query Frame = -2

Query:    1 NLQSPT--VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 327
            N   PT  +K F ERHK A+T LLLLVLFG  ++ICVG LTPAIS+ +++EG+K ++ +LH  VV++IACILLV LFVLQHRG +++AF+F PIVILW L  AA+G+YNI+
Sbjct:  104 NTNRPTSPLKGFIERHKSAQTCLLLLVLFGASMVICVGILTPAISVFASVEGLKFQAKDLHNSVVVLIACILLVALFVLQHRGIHKLAFIFTPIVILWVLLVAAVGIYNII 214

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: B6U7Z6_MAIZE (Potassium transporter OS=Zea mays PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.016e-28
Identity = 63/110 (57.27%), Postives = 85/110 (77.27%), Query Frame = -2

Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN  SP ++RF E+HKK +T  LL+VL G  ++I  G LTPAIS+ S++ G+ VR++ LH+  V++++CI+LVGLF LQHRGT +VAFMFAPIVI+W LS   IG+YNIL
Sbjct:  133 RNGSSPWLRRFLEKHKKMRTLFLLIVLCGASMVIGDGVLTPAISVLSSMSGLHVRATGLHHSSVVLLSCIVLVGLFALQHRGTQKVAFMFAPIVIIWLLSIGGIGLYNIL 242

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK2_ORYSJ (Probable potassium transporter 2 OS=Oryza sativa subsp. japonica GN=HAK2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.479e-27
Identity = 58/105 (55.24%), Postives = 81/105 (77.14%), Query Frame = -2

Query:    1 PTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 315
            P ++RF E+HK A+T LLL+VL G  ++I  G LTPAIS+ S++ G+KVR++ LH   V++++CI+LVGLF LQHRGT +VAFMFAPIV++W      IG+YNI+
Sbjct:  138 PWLRRFMEKHKNARTVLLLIVLCGASMMIGDGILTPAISVLSSMSGLKVRATGLHDRSVVLLSCIVLVGLFALQHRGTQKVAFMFAPIVVIWLFCIGGIGLYNII 242

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT3_ARATH (Potassium transporter 3 OS=Arabidopsis thaliana GN=POT3 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.277e-27
Identity = 65/110 (59.09%), Postives = 85/110 (77.27%), Query Frame = -2

Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RNL S   K   ER+K++KTALL+LVL GT ++I +G LTPAIS+ S+I+G+  ++S L +  V++IAC LLVGLFVLQHRGT +VAF+FAPI+ILW L  A  GVYNI+
Sbjct:  122 RNLPSSAFKSLIERNKRSKTALLVLVLVGTSMVITIGVLTPAISVSSSIDGLVAKTS-LKHSTVVMIACALLVGLFVLQHRGTNKVAFLFAPIMILWLLIIATAGVYNIV 230

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK7_ORYSJ (Potassium transporter 7 OS=Oryza sativa subsp. japonica GN=HAK7 PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 2.429e-24
Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = -2

Query:    1 SPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRS-SELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 318
            S  +KRF E+H+K +T LLL VLFG C++I  G  TPAIS+ SAI G+K      +  G V+ IACI+LVGLF LQHRGT+RVAFMFAPIV++W LS   IG+YNI+
Sbjct:  164 SSPLKRFLEKHRKLRTCLLLFVLFGACMVIGDGVFTPAISVLSAISGLKDPGPGGIPDGWVVFIACIVLVGLFALQHRGTHRVAFMFAPIVVVWLLSIGVIGLYNII 270

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT1_ARATH (Potassium transporter 1 OS=Arabidopsis thaliana GN=POT1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.808e-21
Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = -2

Query:    1 QSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 321
            QS  VK F E+H K++  LLL VL GTC+ I    LTP IS+ SA+ GVK++   LH   V+IIACI+LV +F +Q  GT+RVAF+FAPI   W LS ++IGVYN +
Sbjct:  138 QSAAVKSFFEKHPKSQKCLLLFVLLGTCMAIGDSVLTPTISVLSAVSGVKLKIPNLHENYVVIIACIILVAIFSVQRYGTHRVAFIFAPISTAWLLSISSIGVYNTI 244

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK3_ORYSJ (Probable potassium transporter 3 OS=Oryza sativa subsp. japonica GN=HAK3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.251e-21
Identity = 53/103 (51.46%), Postives = 77/103 (74.76%), Query Frame = -2

Query:    1 VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 309
            ++RF E H+K++T LL+ VLFG  L+I  G LTP +S+ S+  G++V S+ L  G V I++C +LV LF++QH GT+RVAF+FAP+VI+W L   A+GVYNI+
Sbjct:  155 LRRFLENHRKSRTFLLVTVLFGASLVIGDGVLTPPMSVLSSFSGLQVHSTALTSGEVEILSCTVLVCLFMVQHWGTHRVAFLFAPVVIVWLLLLGALGVYNIV 257

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT2_ARATH (Potassium transporter 2 OS=Arabidopsis thaliana GN=POT2 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 4.797e-20
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = -2

Query:    1 VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVR-SSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 309
            VKR+ E+HK   TALLLLVL GTC++I  G LTPAIS+ SA+ G+++  S E H   V+ I C +LV LF LQH GT+RV F+FAPIV+ W L  + IG+YNI+
Sbjct:  139 VKRYLEKHKWLHTALLLLVLLGTCMVIGDGLLTPAISVFSAVSGLELNMSKEHHQYAVIPITCFILVCLFSLQHFGTHRVGFVFAPIVLTWLLCISGIGLYNII 242

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT4_ARATH (Potassium transporter 4 OS=Arabidopsis thaliana GN=POT4 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.102e-19
Identity = 55/106 (51.89%), Postives = 79/106 (74.53%), Query Frame = -2

Query:    1 SPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 318
            S   + F E+HK+ +TALLL+VLFG  ++I  G LTPA+S+ S++ G++     +  G +L++AC++LVGLF LQH GT+RVAFMFAPIVI+W +S   IG+YNI+
Sbjct:  139 SSPFRTFLEKHKRLRTALLLVVLFGAAMVIGDGVLTPALSVLSSLSGLQATEKNVTDGELLVLACVILVGLFALQHCGTHRVAFMFAPIVIIWLISIFFIGLYNII 244

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK9_ORYSJ (Probable potassium transporter 9 OS=Oryza sativa subsp. japonica GN=HAK9 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.256e-19
Identity = 50/104 (48.08%), Postives = 76/104 (73.08%), Query Frame = -2

Query:    1 VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVR-SSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 309
            +K + E+HK  +TALL++V+ GTC++I  G LTPAIS+ SA+ G+++  S + H   V+ I C++LV LF LQH GT+RV F+FAPIV+ W +  + +G+YNI+
Sbjct:  137 IKEWLEKHKTLQTALLIMVMIGTCMVIGDGVLTPAISVFSAVSGLELSLSRDQHEYAVIPITCVILVFLFALQHYGTHRVGFLFAPIVLAWLICMSMLGLYNII 240

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT6_ARATH (Potassium transporter 6 OS=Arabidopsis thaliana GN=POT6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.739e-19
Identity = 40/75 (53.33%), Postives = 57/75 (76.00%), Query Frame = -2

Query:    1 GFLTPAISIRSAIEGVKVRSSELHYGVV-LIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 222
            G LTPAIS+ SA+ GV++  S+ H+  + L  AC++L+GLF LQH GT+RV F+FAP+++LW +  +AIGVYNI 
Sbjct:  170 GVLTPAISVFSAVSGVELSMSKEHHKYIELPAACVILIGLFALQHYGTHRVGFLFAPVILLWLMCISAIGVYNIF 244

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK8_ORYSJ (Putative potassium transporter 8 OS=Oryza sativa subsp. japonica GN=HAK8 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.377e-18
Identity = 52/104 (50.00%), Postives = 75/104 (72.12%), Query Frame = -2

Query:    1 VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLI-IACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 309
            +K + E+HKK  TALL++VL GTC++I  G LTPAIS+ SA+ G++   S+ H    +I I C++L  LF LQH GT+RV F+FAPIV+ W +  +A+G+YNI+
Sbjct:  137 IKVWLEKHKKLHTALLIMVLIGTCMVIGDGVLTPAISVFSAVSGLEFSLSKDHREYAVIPITCVILAFLFALQHYGTHRVGFLFAPIVLAWLICMSALGLYNII 240

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0N9F9_GOSAR	1.911e-55	100.00	Potassium transporter 3 OS=Gossypium arboreum GN=F...	[more]
A0A0B0NE23_GOSAR	2.270e-55	100.00	Potassium transporter 3 OS=Gossypium arboreum GN=F...	[more]
A0A0D2ML10_GOSRA	2.693e-52	97.27	Potassium transporter OS=Gossypium raimondii GN=B4...	[more]
A0A0D2QQ85_GOSRA	1.035e-51	97.27	Potassium transporter OS=Gossypium raimondii GN=B4...	[more]
A0A061G6R4_THECC	1.872e-41	82.73	Potassium transporter OS=Theobroma cacao GN=TCM_01...	[more]
A0A061G5M9_THECC	1.896e-41	82.73	Potassium transporter OS=Theobroma cacao GN=TCM_01...	[more]
B9RCK1_RICCO	1.397e-30	61.82	Potassium transporter OS=Ricinus communis GN=RCOM_...	[more]
A0A0A7RTG8_PRUPE	1.129e-28	60.36	Potassium transporter OS=Prunus persica GN=KUP4 PE...	[more]
M5WDQ0_PRUPE	1.331e-28	60.36	Potassium transporter (Fragment) OS=Prunus persica...	[more]
B6U7Z6_MAIZE	2.016e-28	57.27	Potassium transporter OS=Zea mays PE=2 SV=1	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
HAK2_ORYSJ	2.479e-27	55.24	Probable potassium transporter 2 OS=Oryza sativa s...	[more]
POT3_ARATH	6.277e-27	59.09	Potassium transporter 3 OS=Arabidopsis thaliana GN...	[more]
HAK7_ORYSJ	2.429e-24	58.88	Potassium transporter 7 OS=Oryza sativa subsp. jap...	[more]
POT1_ARATH	1.808e-21	53.27	Potassium transporter 1 OS=Arabidopsis thaliana GN...	[more]
HAK3_ORYSJ	6.251e-21	51.46	Probable potassium transporter 3 OS=Oryza sativa s...	[more]
POT2_ARATH	4.797e-20	55.77	Potassium transporter 2 OS=Arabidopsis thaliana GN...	[more]
POT4_ARATH	5.102e-19	51.89	Potassium transporter 4 OS=Arabidopsis thaliana GN...	[more]
HAK9_ORYSJ	9.256e-19	48.08	Probable potassium transporter 9 OS=Oryza sativa s...	[more]
POT6_ARATH	9.739e-19	53.33	Potassium transporter 6 OS=Arabidopsis thaliana GN...	[more]
HAK8_ORYSJ	3.377e-18	50.00	Putative potassium transporter 8 OS=Oryza sativa s...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003855	Potassium transporter	PFAM	PF02705	K_trans	coord: 7..107 e-value: 6.0E-29 score: 100.9
None	No IPR available	PANTHER	PTHR30540	OSMOTIC STRESS POTASSIUM TRANSPORTER	coord: 1..107
None	No IPR available	PANTHER	PTHR30540:SF9	POTASSIUM TRANSPORTER 4	coord: 1..107
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 88..107
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 58..76
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 77..87
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..42
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 43..57
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 38..42
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 108..108
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 19..37
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..18
None	No IPR available	TMHMM	TMhelix		coord: 57..76
None	No IPR available	TMHMM	TMhelix		coord: 83..105
None	No IPR available	TMHMM	TMhelix		coord: 20..42

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0008826 ID=g.arboreum_cottongen_reftransV1_0008826; Name=g.arboreum_cottongen_reftransV1_0008826; organism=Gossypium arboreum; type=contig; length=331bp
AAGGATATTGTAAACACCAATAGCCGCAGTGGACAATGACCATAAAATCA
CAATGGGAGCAAACATGAAGGCCACTCTATAGGTGCCACGGTGTTGCAAA
ACAAAGAGGCCAACCAACAAAATACAGGCTATGATAAGCACCACACCATA
ATGCAGTTCGCTTGATCGAACTTTGACCCCTTCAATGGCCGAACGAATGG
AAATTGCCGGCGTGAGAAAGCCAACACAAATAAGCAGGCAAGTACCAAAC
AAAACTAGAAGCAGCAAAGCAGTTTTTGCCTTTTTATGCCTCTCGGCAAA
CCTTTTGACTGTCGGAGACTGCAGATTTCTG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR003855	K+_transporter

Vocabulary: **Molecular Function**
Term	Definition
GO:0015079	potassium ion transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0071805	potassium ion transmembrane transport

Search form

g.arboreum_cottongen_reftransV1_0008826, g.arboreum_cottongen_reftransV1_0008826 (contig) Gossypium arboreum

Pages

Pages