g.arboreum_cottongen_reftransV1_0008718, g.arboreum_cottongen_reftransV1_0008718 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008718
Unique Nameg.arboreum_cottongen_reftransV1_0008718
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1170
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr3chromosomeg.arboreum_cottongen_reftransV1_0008718:1..1170 .
Chr3:281277..283729 -
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A0B0MRW6_GOSAR (N utilization substance B OS=Gossypium arboreum GN=F383_21584 PE=4 SV=1)

HSP 1 Score: 562.762 bits (1449), Expect = 0.000e+0
Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 3 
Query:   45 MEGIRCSSVLSCYYSSKTHFKLRHQALEHCFXXXXXXXXXXXXXXXKVRISLPSMALQVQDQQSFHKSKEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEVPLQV 914
            MEGIRCSSVLSCYYSSKTHFKLRHQALEHCFLSLPPPPPRHPASRPKVRISLPSMALQVQDQQSFHKSKEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEVPLQV
Sbjct:    1 MEGIRCSSVLSCYYSSKTHFKLRHQALEHCFLSLPPPPPRHPASRPKVRISLPSMALQVQDQQSFHKSKEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEVPLQV 290
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BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A0D2QXK6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G020300 PE=4 SV=1)

HSP 1 Score: 543.117 bits (1398), Expect = 0.000e+0
Identity = 281/292 (96.23%), Postives = 281/292 (96.23%), Query Frame = 3 
Query:   45 MEGIRCSSVLSCYYSSKTHFKLRHQALEHCFXXXXXXXXXXX--XXXXKVRISLPSMALQVQDQQSFHKSKEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEVPLQV 914
            MEGIR SSVLSCYYSSKTHFKLR Q LEHCFLSLPPPPP     ASRPKVRISLPSMALQVQD QSFHKSKEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVA VDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLA RFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEVPLQV
Sbjct:    1 MEGIRSSSVLSCYYSSKTHFKLRRQPLEHCFLSLPPPPPPPRHPASRPKVRISLPSMALQVQDHQSFHKSKEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVATVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLANRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEVPLQV 292
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BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A061GR97_THECC (Antitermination NusB domain-containing protein isoform 1 OS=Theobroma cacao GN=TCM_038626 PE=4 SV=1)

HSP 1 Score: 473.781 bits (1218), Expect = 5.516e-164
Identity = 241/286 (84.27%), Postives = 253/286 (88.46%), Query Frame = 3 
Query:   45 MEGIRCSSVLSCYYSSKTHFKLRHQALEHCF-----XXXXXXXXXXXXXXXKVRISLPSMALQVQDQQSFHKSKEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSN 887
            MEGIR S VLSCY SSKT+F+L HQALE+ F     L LP P  R   S P +R  LP++ALQVQDQQSFHKSKEMLPKIDKSGRFCSPRAARELALLIVYA+CLQGSDPIRLFEKR+NA REPGYEFDKASLLQYNHMSFGGPPVTT S EEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLL FTRKLLVAIVDKWD+HVL IDK+ P NWKNEPAGRILELSILHLAMSE+TVLGTRH IVINEAVDLAKRFCDGAAPR+INGCLRTFVKDLAGT  AQ S 
Sbjct:    1 MEGIRSSCVLSCY-SSKTYFRLHHQALEYPFLCRLPLPLPLPAKRQFTSSPTIRSCLPTLALQVQDQQSFHKSKEMLPKIDKSGRFCSPRAARELALLIVYAACLQGSDPIRLFEKRVNATREPGYEFDKASLLQYNHMSFGGPPVTTQSAEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLRFTRKLLVAIVDKWDSHVLVIDKIAPLNWKNEPAGRILELSILHLAMSEMTVLGTRHQIVINEAVDLAKRFCDGAAPRVINGCLRTFVKDLAGTGIAQASK 285
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BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: B9GXX5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s20820g PE=4 SV=2)

HSP 1 Score: 395.971 bits (1016), Expect = 3.984e-133
Identity = 190/228 (83.33%), Postives = 205/228 (89.91%), Query Frame = 3 
Query:  225 DQQSFHKSKEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTS--NSKLEV 902
            D  S    KEM+PKIDKSGRFCSPRAARELALLI+YA+CL+GSDPIRLFEKR+NA REPGYEFDKASLL+YNHMSFGGPPVTT +VEEADEL  SDE++SAIEAEVLSAPPKLVYSKLLL FTRKLLVA+VDKWD+HVL IDKV P NWKNEPAGRILE  ILH+AMSEITVLGTRH IVINEAVDLAKRFCDGA PRIINGCLRTF+KDL+G S AQTS  N K+EV
Sbjct:   81 DDSSPTNYKEMMPKIDKSGRFCSPRAARELALLIIYAACLEGSDPIRLFEKRMNARREPGYEFDKASLLEYNHMSFGGPPVTTETVEEADELQLSDEKESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDSHVLVIDKVSPPNWKNEPAGRILEFCILHMAMSEITVLGTRHQIVINEAVDLAKRFCDGAGPRIINGCLRTFLKDLSGASVAQTSDANEKVEV 308
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BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A067EH40_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021860mg PE=4 SV=1)

HSP 1 Score: 394.045 bits (1011), Expect = 2.036e-132
Identity = 205/298 (68.79%), Postives = 234/298 (78.52%), Query Frame = 3 
Query:   63 SSVLSCYYSSKTHF--KLRHQALEHCFXXXXXXXXXXXXXXXKVR-----ISLPSMALQVQD-----QQSFHKS--KEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEVPLQV 914
            SS LSC  SSKTHF   LR  +    +            +R   R     +S  + A  VQ+     ++S   S  KEM+PKIDKSGRFCSPRAARELALL+VYA+CL+GSDPIRLFEKR+N+ REPGYEFDK+SLL+YNHMSFGGPPVTT +VEEADELLRSDE++SAIEAEVLSAPPKLVYSKLLL FTRKLLVA+VDKWD HV  IDKVVP  WK++PAGRILELSILHLAMSEITV+GTRH IVINEAVDLAKRFCDGAAPRIINGCLRTFV++L GT+  + S +  EVP +V
Sbjct:    7 SSFLSC--SSKTHFLFNLRASSSPSSWKKFTQSANFAAKNRHVCRNERPNVSCSAAAFAVQETLEKTRESVMASSAKEMMPKIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEVPSEV 302
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BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: V4VZ68_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015880mg PE=4 SV=1)

HSP 1 Score: 394.815 bits (1013), Expect = 2.842e-132
Identity = 205/298 (68.79%), Postives = 234/298 (78.52%), Query Frame = 3 
Query:   63 SSVLSCYYSSKTHF--KLRHQALEHCFXXXXXXXXXXXXXXXKVR-----ISLPSMALQVQD-----QQSFHKS--KEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEVPLQV 914
            SS LSC  SSKTHF   LR  +    +            +R   R     +S  + A  VQ+     ++S   S  KEM+PKIDKSGRFCSPRAARELALL+VYA+CL+GSDPIRLFEKR+N+ REPGYEFDK+SLL+YNHMSFGGPPVTT +VEEADELLRSDE++SAIEAEVLSAPPKLVYSKLLL FTRKLLVA+VDKWD HV  IDKVVP  WK++PAGRILELSILHLAMSEITV+GTRH IVINEAVDLAKRFCDGAAPRIINGCLRTFV++L GT+  + S +  EVP +V
Sbjct:   38 SSFLSC--SSKTHFLFNLRASSSPSSWKKFTQSANFAAKNRHVCRNERPNVSCSAAAFAVQETLEKTRESVMASSAKEMMPKIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEVPSEV 333
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A067EUA5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021860mg PE=4 SV=1)

HSP 1 Score: 390.578 bits (1002), Expect = 3.708e-132
Identity = 184/223 (82.51%), Postives = 206/223 (92.38%), Query Frame = 3 
Query:  246 SKEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEVPLQV 914
            +KEM+PKIDKSGRFCSPRAARELALL+VYA+CL+GSDPIRLFEKR+N+ REPGYEFDK+SLL+YNHMSFGGPPVTT +VEEADELLRSDE++SAIEAEVLSAPPKLVYSKLLL FTRKLLVA+VDKWD HV  IDKVVP  WK++PAGRILELSILHLAMSEITV+GTRH IVINEAVDLAKRFCDGAAPRIINGCLRTFV++L GT+  + S +  EVP +V
Sbjct:    5 AKEMMPKIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEVPSEV 227
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A067EKS2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021860mg PE=4 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 4.227e-130
Identity = 205/302 (67.88%), Postives = 234/302 (77.48%), Query Frame = 3 
Query:   63 SSVLSCYYSSKTHF--KLRHQALEHCFXXXXXXXXXXXXXXXKVR-----ISLPSMALQVQD-----QQSFHKS--KEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWK----NEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEVPLQV 914
            SS LSC  SSKTHF   LR  +    +            +R   R     +S  + A  VQ+     ++S   S  KEM+PKIDKSGRFCSPRAARELALL+VYA+CL+GSDPIRLFEKR+N+ REPGYEFDK+SLL+YNHMSFGGPPVTT +VEEADELLRSDE++SAIEAEVLSAPPKLVYSKLLL FTRKLLVA+VDKWD HV  IDKVVP  WK    ++PAGRILELSILHLAMSEITV+GTRH IVINEAVDLAKRFCDGAAPRIINGCLRTFV++L GT+  + S +  EVP +V
Sbjct:    7 SSFLSC--SSKTHFLFNLRASSSPSSWKKFTQSANFAAKNRHVCRNERPNVSCSAAAFAVQETLEKTRESVMASSAKEMMPKIDKSGRFCSPRAARELALLVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKVWKMDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEVPSEV 306
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A067JM20_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21521 PE=4 SV=1)

HSP 1 Score: 382.104 bits (980), Expect = 1.840e-128
Identity = 181/241 (75.10%), Postives = 212/241 (87.97%), Query Frame = 3 
Query:  189 RISLPSMALQVQD-QQSFHKSKEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTS--NSKLEV 902
            R SL + A  ++   ++  K KEM+PKIDKSGRFCSPRAARELALL +YA+CL+GSDPIRLFEKR+NA REPGYEF+KASL++YNHMSFGGPPVT  +VEEAD+L +SDE++SA+E EVLSAPPKLVYSKLLL FTRKLLVA+VDKWD+HVL IDKV P NWKN+PAGRILE  ILHLAMSEITVLGTRH IVINEA+DLAKRFCDG+APRIINGCLR+F+KDL+GT+ A+ +  N K+EV
Sbjct:   20 RSSLRTSAFVIEKATENSTKGKEMMPKIDKSGRFCSPRAARELALLTIYAACLEGSDPIRLFEKRMNARREPGYEFNKASLMEYNHMSFGGPPVTAETVEEADKLQQSDEKESAVEEEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDSHVLIIDKVSPPNWKNQPAGRILEFCILHLAMSEITVLGTRHQIVINEAIDLAKRFCDGSAPRIINGCLRSFMKDLSGTNEARATDANQKVEV 260
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A0D2MS85_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G020300 PE=4 SV=1)

HSP 1 Score: 380.178 bits (975), Expect = 3.178e-128
Identity = 202/212 (95.28%), Postives = 202/212 (95.28%), Query Frame = 3 
Query:   45 MEGIRCSSVLSCYYSSKTHFKLRHQALEHCFXXXXXXXXXXX--XXXXKVRISLPSMALQVQDQQSFHKSKEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWK 674
            MEGIR SSVLSCYYSSKTHFKLR Q LEHCFLSLPPPPP     ASRPKVRISLPSMALQVQD QSFHKSKEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVA VDKWDNHVLAIDKVVPSNWK
Sbjct:    1 MEGIRSSSVLSCYYSSKTHFKLRRQPLEHCFLSLPPPPPPPRHPASRPKVRISLPSMALQVQDHQSFHKSKEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVATVDKWDNHVLAIDKVVPSNWK 212
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy Swiss-Prot
Match: NUSB_PEPD6 (N utilization substance protein B homolog OS=Peptoclostridium difficile (strain 630) GN=nusB PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 3.620e-8
Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 3 
Query:  645 IDKVVPSNWKNEPAGRI--LELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLA 860
            ID+++  + KN    R+  +++SIL L++ EI  L T + + INEAV+LAK +CD  +P+ ING L + V ++ 
Sbjct:   95 IDELINKHAKNWTVDRMPKVDVSILRLSVCEILYLDTPNKVSINEAVELAKIYCDDKSPKFINGILGSVVDEIG 168
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0MRW6_GOSAR0.000e+0100.00N utilization substance B OS=Gossypium arboreum GN... [more]
A0A0D2QXK6_GOSRA0.000e+096.23Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061GR97_THECC5.516e-16484.27Antitermination NusB domain-containing protein iso... [more]
B9GXX5_POPTR3.984e-13383.33Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A067EH40_CITSI2.036e-13268.79Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4VZ68_9ROSI2.842e-13268.79Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A067EUA5_CITSI3.708e-13282.51Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067EKS2_CITSI4.227e-13067.88Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067JM20_JATCU1.840e-12875.10Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A0D2MS85_GOSRA3.178e-12895.28Uncharacterized protein OS=Gossypium raimondii GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NUSB_PEPD63.620e-839.19N utilization substance protein B homolog OS=Pepto... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006027NusB/RsmB/TIM44PFAMPF01029NusBcoord: 176..269
e-value: 5.1E-12
score: 46.1
IPR006027NusB/RsmB/TIM44GENE3D1.10.940.10coord: 81..124
e-value: 1.2E-23
score: 82.9
coord: 182..271
e-value: 1.2E-23
score: 82.9
IPR006027NusB/RsmB/TIM44SUPERFAMILY48013NusB-likecoord: 82..117
coord: 175..271
IPR011605NusB antitermination factorPANTHERPTHR11078N UTILIZATION SUBSTANCE PROTEIN B-RELATEDcoord: 14..285

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008718 ID=g.arboreum_cottongen_reftransV1_0008718; Name=g.arboreum_cottongen_reftransV1_0008718; organism=Gossypium arboreum; type=contig; length=1170bp
GAAGTAGAAGATAGAAGAGTGAGAGCAGCCAGCAAAAGAGAAACATGGAG
GGAATACGGTGTAGCAGCGTTTTAAGCTGTTACTACTCTTCTAAAACCCA
TTTCAAATTACGCCATCAAGCGTTGGAACATTGCTTTTTGAGCTTGCCGC
CACCGCCGCCTCGGCACCCTGCAAGCCGCCCCAAAGTTCGAATTTCACTC
CCTTCCATGGCGCTTCAGGTCCAAGACCAACAATCTTTTCATAAATCCAA
AGAAATGCTCCCAAAAATAGACAAAAGTGGCCGCTTTTGCAGTCCAAGAG
CCGCCCGGGAGCTTGCTTTATTAATAGTTTATGCCTCGTGTTTGCAAGGG
TCGGACCCTATTAGGCTGTTTGAGAAGCGAATTAATGCAGCCAGAGAACC
TGGCTATGAATTTGACAAGGCTTCGTTATTGCAATACAACCACATGAGCT
TCGGAGGGCCTCCGGTCACTACACATTCTGTTGAAGAAGCAGATGAGCTT
TTACGCAGCGATGAGCAGGATTCCGCCATTGAGGCAGAAGTTCTTTCGGC
GCCTCCAAAGTTGGTGTACAGCAAGCTTCTTTTGAGTTTCACAAGGAAGC
TTTTGGTTGCAATTGTGGACAAATGGGACAATCATGTTCTTGCTATTGAT
AAAGTTGTGCCATCAAATTGGAAGAATGAGCCAGCTGGTAGGATTTTGGA
GCTTAGTATTCTTCACTTAGCAATGTCAGAGATAACCGTTCTCGGAACCC
GGCACCCAATTGTCATTAACGAGGCTGTTGATCTTGCGAAACGATTCTGT
GATGGGGCGGCTCCACGAATAATCAACGGGTGCCTACGGACTTTTGTGAA
GGATCTTGCCGGGACCAGCACGGCTCAGACCTCAAACTCAAAACTGGAAG
TGCCTCTTCAAGTATGAAAGTTAGTTCATTTAAGGCTATTTCTTGCTTTT
TATAGATCTCTGGGTTGCCACATCACAATGGTTTAGTCTCTGAGTAATGT
AATCTTCAGCTCATTTGAGTGCTTATAAAGGACTGAGTTATAGCATAGAA
AGATGCAGAGAATTAAAAAAACAGATAAATTGTGGCAACGATCAAAATAT
TTGACAGCTGAAGAATTTTGTATATGATTATGCTGTAGTTAGAATCTTTA
CATGTAAAACATAAAATGAT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006027NusB_RsmB_TIM44
IPR011605NusB_fam
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription
GO:0006353DNA-templated transcription termination