g.arboreum_cottongen_reftransV1_0002516, g.arboreum_cottongen_reftransV1_0002516 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0002516
Unique Nameg.arboreum_cottongen_reftransV1_0002516
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length822
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0002516:1..822 .
Chr12:69797659..69798667 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A0B0PDB1_GOSAR (Argininosuccinate lyase OS=Gossypium arboreum GN=F383_28306 PE=4 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.932e-51
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 3
Query:   15 MNMDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRVNAYMREKGNKD 302
            MNMDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWNELEKENKEFFEAYTRNRDQRATDMEKRGRIQFRVNAYMREKGNKD
Sbjct:    1 MNMDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWNELEKENKEFFEAYTRNRDQRATDMEKRGRIQFRVNAYMREKGNKD 96          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A0D2U0P9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G423500 PE=4 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.674e-49
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 3
Query:   15 MNMDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRVNAYMREKGNKD 302
            MNMDDSSASYIHMVHHLIEECLIFNMSKEECMEAL+KHAS+KPVITSTVWNELEKENKEFFEAYTRNRDQRATDMEKR RIQFRVNAYMREKGNKD
Sbjct:    1 MNMDDSSASYIHMVHHLIEECLIFNMSKEECMEALAKHASIKPVITSTVWNELEKENKEFFEAYTRNRDQRATDMEKRQRIQFRVNAYMREKGNKD 96          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A061EZD3_THECC (Plant protein 1589 of Uncharacterized protein function OS=Theobroma cacao GN=TCM_022011 PE=4 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.351e-35
Identity = 77/92 (83.70%), Postives = 85/92 (92.39%), Query Frame = 3
Query:   27 DSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRVNAYMREKGNKD 302
            DSSASYIHMVHHLIEECLIFNMSKEEC+EALSKHA++KPVITSTVWNELEKENKEFFEAYTR RDQRAT++EKR RIQ R+ A MRE  +K+
Sbjct:    4 DSSASYIHMVHHLIEECLIFNMSKEECIEALSKHANIKPVITSTVWNELEKENKEFFEAYTRGRDQRATEIEKRQRIQSRLKASMRETIDKN 95          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A0B0PCA0_GOSAR (Argininosuccinate lyase OS=Gossypium arboreum GN=F383_27307 PE=4 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.202e-33
Identity = 72/89 (80.90%), Postives = 82/89 (92.13%), Query Frame = 3
Query:   21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRVNAYMRE 287
            M DSSASYIHMVHHLIEECLIFNMSKEECMEALSKHA+VKPVITSTVWNEL+KENKEFFEAY + RDQRA ++E+R RIQ ++NA ++E
Sbjct:    1 MGDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHANVKPVITSTVWNELQKENKEFFEAYIKGRDQRAIEVEQRQRIQTQLNASIKE 89          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A0B0PFW8_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_05682 PE=4 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.406e-31
Identity = 68/86 (79.07%), Postives = 79/86 (91.86%), Query Frame = 3
Query:   21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRVNAY 278
            M DSSASYI++V HLIEECLIFNMSKEECMEALSKHA++KPVITSTVW+ELEKENKEFFEAY + RDQRAT++EKR RIQ ++N +
Sbjct:    1 MGDSSASYINLVQHLIEECLIFNMSKEECMEALSKHANIKPVITSTVWDELEKENKEFFEAYIKGRDQRATEIEKRQRIQKKLNTF 86          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A0D2NDW8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G250100 PE=4 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.950e-30
Identity = 67/86 (77.91%), Postives = 78/86 (90.70%), Query Frame = 3
Query:   21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRVNAY 278
            M DSSASYI++V HLIEECLIFNMSKEECMEALS HA++KPVITSTVW+ELEKENKEFFEAY + RDQRAT++EKR RIQ ++N +
Sbjct:    1 MGDSSASYINLVQHLIEECLIFNMSKEECMEALSMHANIKPVITSTVWDELEKENKEFFEAYLKGRDQRATEIEKRQRIQKKLNTF 86          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A0D2PKI8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G375100 PE=4 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.840e-30
Identity = 68/89 (76.40%), Postives = 79/89 (88.76%), Query Frame = 3
Query:   21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRVNAYMRE 287
            M D SASYIHMVHHLIEECLIFNMSKEECMEALSKHA++KPVITSTVWNEL+KEN EFFEAYT+ RDQRA ++E+R + Q  +NA ++E
Sbjct:    1 MGDPSASYIHMVHHLIEECLIFNMSKEECMEALSKHANIKPVITSTVWNELQKENNEFFEAYTKGRDQRANELEQR-QTQL-INASIKE 87          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A067DMN1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034486mg PE=4 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 7.864e-29
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 3
Query:   21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQ 260
            MDDSSASYIH+VHHLIEECL+FNMSKEECMEALSKHA++KPVITSTVW ELEKENKEFFEAY R   +RAT ME R RI+
Sbjct:    1 MDDSSASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARKNAERATVMETRERIE 80          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: V4S4C7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013206mg PE=4 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 7.864e-29
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 3
Query:   21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQ 260
            MDDSSASYIH+VHHLIEECL+FNMSKEECMEALSKHA++KPVITSTVW ELEKENKEFFEAY R   +RAT ME R RI+
Sbjct:    1 MDDSSASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARKNAERATVMETRERIE 80          
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A067D251_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034494mg PE=4 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 8.822e-29
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 3
Query:   21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQ 260
            MDDSSASYIH+VHHLIEECL+FNMSKEECMEALSKHA++KPVITSTVW ELEKENKEFFEAY R   +RAT ME R RI+
Sbjct:    1 MDDSSASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARKNAERATVMETRERIE 80          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0PDB1_GOSAR2.932e-51100.00Argininosuccinate lyase OS=Gossypium arboreum GN=F... [more]
A0A0D2U0P9_GOSRA1.674e-4996.88Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061EZD3_THECC1.351e-3583.70Plant protein 1589 of Uncharacterized protein func... [more]
A0A0B0PCA0_GOSAR1.202e-3380.90Argininosuccinate lyase OS=Gossypium arboreum GN=F... [more]
A0A0B0PFW8_GOSAR1.406e-3179.07Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2NDW8_GOSRA1.950e-3077.91Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2PKI8_GOSRA7.840e-3076.40Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A067DMN1_CITSI7.864e-2982.50Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4S4C7_9ROSI7.864e-2982.50Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A067D251_CITSI8.822e-2982.50Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006476Conserved hypothetical protein CHP01589, plantTIGRFAMTIGR01589TIGR01589coord: 15..69
e-value: 1.0E-25
score: 87.5
IPR006476Conserved hypothetical protein CHP01589, plantPFAMPF09713A_thal_3526coord: 18..69
e-value: 1.3E-26
score: 92.5
NoneNo IPR availablePANTHERPTHR31871:SF3SUBFAMILY NOT NAMEDcoord: 1..86
NoneNo IPR availablePANTHERPTHR31871FAMILY NOT NAMEDcoord: 1..86

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0002516 ID=g.arboreum_cottongen_reftransV1_0002516; Name=g.arboreum_cottongen_reftransV1_0002516; organism=Gossypium arboreum; type=contig; length=822bp
ATTTGTTTCATTTCATGAACATGGATGACTCTTCTGCTTCATACATCCAT
ATGGTGCATCATCTGATAGAAGAGTGTTTGATATTCAACATGAGCAAAGA
AGAGTGCATGGAAGCTTTGTCTAAGCATGCAAGTGTTAAACCAGTCATTA
CTTCAACAGTTTGGAATGAGTTGGAAAAAGAGAATAAGGAGTTCTTTGAG
GCTTACACAAGAAACAGAGACCAAAGAGCTACAGACATGGAGAAAAGGGG
AAGGATCCAGTTCAGGGTTAATGCATACATGAGGGAGAAAGGAAATAAGG
ACTAATTTAATGCATGATCTATTAGCTCAAAATCAAGATTTAGACTTGTT
TAAGTAGTTCTTGATCCATAGTTGTAGAGTTTGTATAAGCAATAGCCTCC
ATAGCAGAGGTGGTCCAAAATTTTAGTTCCTACCTGGTGTTGAGCCAACG
GAATCTAAGGTAAAACCCTCACCGCTCGCTGTCAGGTCAGCTTTGTTAGA
ACTTGCCTTTAGTAAAAAAAAAAGAACAAAGTGTATATATTGTAATAAAA
TTCATTACATTTGCAAAGGCGATTTAACTTTTTCTTTTTGGGGGTTCTGT
TTTGGGACCATTTTCAATTGTCACAGTCTGAAGCTTTTTCTGAAAGGAGG
GCTCAATTTATTGTCTTTTTTTTTTTAATTTGCTGTGATTCGGATGTAAA
TGATGCGAAGTATGCGGTTGAGAAAGCCAAGCTGTGGAACAAAAAAGAAA
AAGAAAGCCAAGTTGAAGAAGTCATCCACCATGGGTCAAAGATGGTAAAA
TACATCTCTTCTTGGGTTGAGT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006476CHP01589_pln