g.arboreum_cottongen_reftransV1_0000340, g.arboreum_cottongen_reftransV1_0000340 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0000340
Unique Nameg.arboreum_cottongen_reftransV1_0000340
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length362
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold940supercontigg.arboreum_cottongen_reftransV1_0000340:1..362 .
scaffold940:280630..281539 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: A0A0B0NAJ6_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_15167 PE=4 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 2.432e-80
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 2 
Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARSSS 361
            LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARSSS
Sbjct:  440 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARSSS 559
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: A0A0D2R853_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G178200 PE=4 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 3.611e-79
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 2 
Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARSSS 361
            LVPYKRFSSRMAAIDYTVCLHSEVF+TTQGGNFPHFLMGHRRYLY GHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARSSS
Sbjct:  418 LVPYKRFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYSGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARSSS 537
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: A0A0D2QES6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G178200 PE=4 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.758e-79
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 2 
Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARSSS 361
            LVPYKRFSSRMAAIDYTVCLHSEVF+TTQGGNFPHFLMGHRRYLY GHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARSSS
Sbjct:  440 LVPYKRFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYSGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARSSS 559
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: A0A061EFB6_THECC (O-fucosyltransferase family protein OS=Theobroma cacao GN=TCM_010885 PE=4 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 4.711e-75
Identity = 111/120 (92.50%), Postives = 117/120 (97.50%), Query Frame = 2 
Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARSSS 361
            L PYK FSSRMAAIDYTVCLHSEVF+TTQGGNFPHFLMGHRRYLYGGHSKTIRPDKR+LALLFDNPNIGW++FKRQMLNMRSHSD+KGFELKRPNDSIYTFPCPDCMCRTNKSE +RSSS
Sbjct:  440 LAPYKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRKLALLFDNPNIGWKSFKRQMLNMRSHSDSKGFELKRPNDSIYTFPCPDCMCRTNKSEDSRSSS 559
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: F6HFH6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05000 PE=4 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 5.131e-73
Identity = 106/120 (88.33%), Postives = 115/120 (95.83%), Query Frame = 2 
Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARSSS 361
            L P+K +SSRMAAIDYTVCLHSEVF+TTQGGNFPHFLMGHRRYLYGGHSKT+RPDKR+LALLFDNPNIGW++FKRQMLNMR+HSD KGFELKRPNDSIYTFPCPDCMCR NKSE +RSSS
Sbjct:  442 LAPFKNYSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYGGHSKTVRPDKRKLALLFDNPNIGWKSFKRQMLNMRAHSDAKGFELKRPNDSIYTFPCPDCMCRMNKSEDSRSSS 561
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: A0A0D2RG16_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G161000 PE=4 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 5.881e-72
Identity = 107/120 (89.17%), Postives = 115/120 (95.83%), Query Frame = 2 
Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARSSS 361
            L PYK FSSRMAAIDYTVCLHSEVF+TTQGGNFPHFLMGHRRYL+GGHSKTIRPDKR+LALLFDNPNIGW++FKRQMLNMRSHSD+KGFELKRP+DSIYTFPCPDCMC TNKS  +RSSS
Sbjct:  440 LAPYKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLHGGHSKTIRPDKRKLALLFDNPNIGWKSFKRQMLNMRSHSDSKGFELKRPSDSIYTFPCPDCMCHTNKSADSRSSS 559
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: A0A0B0NZN9_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_04918 PE=4 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 2.820e-71
Identity = 106/120 (88.33%), Postives = 114/120 (95.00%), Query Frame = 2 
Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARSSS 361
            L PYK FSSRMAAIDYTVCLHSEVF+TTQGGNFPHFLMGHRRYL+GGHSKTIRPDKR+LALLFDNPNIGW++FKRQMLNMRSHSD+KGFELK+P DSIYTFPCPDCMCRTNKS  + SSS
Sbjct:  440 LAPYKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLFGGHSKTIRPDKRKLALLFDNPNIGWKSFKRQMLNMRSHSDSKGFELKKPVDSIYTFPCPDCMCRTNKSANSGSSS 559
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: S8C3M9_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_13528 PE=4 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 9.752e-71
Identity = 96/120 (80.00%), Postives = 113/120 (94.17%), Query Frame = 2 
Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARSSS 361
            L P++ +SSRMAAIDYTVCLHSEVF+TTQGGNFPHFL+GHRR+LYGGHS+TIRPDKR+LA++FDNPNIGW++FKRQMLNMRSHSD+KG ELKRPNDSIY+ PCPDCMCR N +E ++SSS
Sbjct:   53 LSPFQNYSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLLGHRRFLYGGHSRTIRPDKRKLAVIFDNPNIGWKSFKRQMLNMRSHSDSKGIELKRPNDSIYSVPCPDCMCRVNGTEDSKSSS 172
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: W9QTR7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022926 PE=4 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 4.463e-70
Identity = 103/120 (85.83%), Postives = 113/120 (94.17%), Query Frame = 2 
Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARSSS 361
            L P+K +SSRMAAIDYTVCLHSEVF+TTQGGNFPHFLMGHRRYLYGGHSKTIRPDKR+LALLFDNPNIGW++FKRQML +RSHSD KGFELKRPNDSIYTFPCPDCMCR NK+E ++ SS
Sbjct:  441 LAPFKNYSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRKLALLFDNPNIGWKSFKRQMLGIRSHSDLKGFELKRPNDSIYTFPCPDCMCRINKTEDSKPSS 560
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Match: A0A059BEP3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02181 PE=4 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.235e-70
Identity = 101/120 (84.17%), Postives = 114/120 (95.00%), Query Frame = 2 
Query:    2 LVPYKRFSSRMAAIDYTVCLHSEVFLTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRTFKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAARSSS 361
            L P+K +SSRMAAIDYTVCLHSEVF+TTQGGNFPHFL+GHRRY+YGGHSKTIRPDKR+LAL+FDNPN+GW+ FKRQMLNMRSHSD+KGFELKRPNDSIY+FPCPDCMC  NK+E +RSSS
Sbjct:  443 LAPFKNYSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLLGHRRYMYGGHSKTIRPDKRKLALIFDNPNLGWKNFKRQMLNMRSHSDSKGFELKRPNDSIYSFPCPDCMCHRNKTEDSRSSS 562
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.336e-10
Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 2 
Query:   35 AAIDYTVCLHSEVFLTTQGG--NFPHFLMGHRRYLYGGHSKTIRPDKRRLALLFDNPNIGWRT-FKRQMLNMRSHSDTKGFELKRPNDSIYTFPCPDCMCRTNKSEAA 349
            +A+DY VCL S++F+ T  G  NF + L+GHR  LY G   TIRPD++ LA +F     G R  F+  +  +   ++  G   +   +S YT   P+C C+ N  +++
Sbjct:  377 SAVDYMVCLLSDIFMPTYDGPSNFANNLLGHR--LYYGFRTTIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSPESFYTNSWPECFCQMNPKKSS 482
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0NAJ6_GOSAR2.432e-80100.00Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2R853_GOSRA3.611e-7998.33Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QES6_GOSRA6.758e-7998.33Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061EFB6_THECC4.711e-7592.50O-fucosyltransferase family protein OS=Theobroma c... [more]
F6HFH6_VITVI5.131e-7388.33Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A0D2RG16_GOSRA5.881e-7289.17Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0NZN9_GOSAR2.820e-7188.33Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
S8C3M9_9LAMI9.752e-7180.00Uncharacterized protein (Fragment) OS=Genlisea aur... [more]
W9QTR7_9ROSA4.463e-7085.83Uncharacterized protein OS=Morus notabilis GN=L484... [more]
A0A059BEP3_EUCGR9.235e-7084.17Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0000340 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1491_ARATH2.336e-1035.19Uncharacterized protein At1g04910 OS=Arabidopsis t... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019378GDP-fucose protein O-fucosyltransferasePFAMPF10250O-FucTcoord: 2..34
e-value: 2.7E-7
score: 30.5
NoneNo IPR availablePANTHERPTHR31288FAMILY NOT NAMEDcoord: 1..110
NoneNo IPR availablePANTHERPTHR31288:SF10O-FUCOSYLTRANSFERASE FAMILY PROTEINcoord: 1..110

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0000340 ID=g.arboreum_cottongen_reftransV1_0000340; Name=g.arboreum_cottongen_reftransV1_0000340; organism=Gossypium arboreum; type=contig; length=362bp
ACTTGTTCCATATAAGAGATTTTCATCCAGGATGGCTGCCATAGACTATA
CTGTTTGCCTTCATAGCGAGGTATTTTTGACTACTCAAGGTGGGAATTTT
CCTCATTTTCTGATGGGCCACAGGAGGTACCTGTACGGCGGACATTCCAA
GACAATTCGACCAGACAAGCGAAGGTTGGCACTGCTATTTGATAACCCTA
ATATTGGATGGAGAACTTTCAAGCGACAAATGCTGAATATGAGGTCTCAT
AGTGACACAAAGGGGTTTGAGCTCAAAAGGCCCAATGATTCGATATATAC
CTTCCCATGCCCTGATTGCATGTGTCGTACAAACAAATCAGAAGCAGCAA
GATCATCATCGG
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR019378GDP-Fuc_O-FucTrfase