g.arboreum_cottongen_reftransV1_0004382, g.arboreum_cottongen_reftransV1_0004382 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0004382
Unique Name	g.arboreum_cottongen_reftransV1_0004382
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	639

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr10	chromosome	g.arboreum_cottongen_reftransV1_0004382:1..639 . Chr10:76266450..76267209 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: A0A0D2TXM7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G302900 PE=4 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 2.740e-66
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 2

Query:  182 MATQREGEASQETTTTPPASLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTSVKKAPTSDDKVPK 499
            MATQREG+ASQETT TPPASL+ELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTSVKKAPTSDDKVPK
Sbjct:    1 MATQREGQASQETTATPPASLAELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTSVKKAPTSDDKVPK 106

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: A0A061FJ10_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_036468 PE=4 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.010e-54
Identity = 87/106 (82.08%), Postives = 96/106 (90.57%), Query Frame = 2

Query:  182 MATQREGEASQETTTTPPASLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTSVKKAPTSDDKVPK 499
            MATQ+EGEASQ+TT+TP  SL+ELV+ERY+K+KEHAETYPYVW SYTLVYGGLALWT YRWRKLRKTEDRVR LQERLRKL+ENEEAANS  SV KAPTS DK P+
Sbjct:    1 MATQQEGEASQQTTSTPATSLTELVRERYQKMKEHAETYPYVWASYTLVYGGLALWTAYRWRKLRKTEDRVRVLQERLRKLIENEEAANSAKSVSKAPTSVDKTPR 106

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: B9HEY7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s04470g PE=4 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.908e-36
Identity = 66/106 (62.26%), Postives = 82/106 (77.36%), Query Frame = 2

Query:  182 MATQREGEASQETTTTPPASLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTSVKKAPTSDDKVPK 499
            MA+Q++ +    +T+   A   E+V +RY+KI+EHAETYPYVW SY +VYGGL LW  YRWRKLRKTEDRVR LQERLRKLVE EE A+S  SV+KAP+S +K P+
Sbjct:    1 MASQQKEDLP--STSPRAAGFGEMVVDRYQKIREHAETYPYVWASYIVVYGGLGLWATYRWRKLRKTEDRVRVLQERLRKLVETEEGASSTKSVEKAPSSTEKTPR 104

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: B9H4B9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s06790g PE=4 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.848e-36
Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 2

Query:  182 MATQREGEASQETTTTPPASLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSG 454
            MA+Q++GE  Q T++ P A   ++  ERYRKI+EHAETYPYVW SY +VYGGL LW  YRWRKLRKTEDRVRALQERLRKLVE +E A+S 
Sbjct:    1 MASQQKGEEDQPTSSPPAAGFGQMAVERYRKIREHAETYPYVWASYIVVYGGLGLWATYRWRKLRKTEDRVRALQERLRKLVETQEGASSA 91

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: V4V0T1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003637mg PE=4 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.021e-33
Identity = 61/93 (65.59%), Postives = 74/93 (79.57%), Query Frame = 2

Query:  182 MATQREGEASQETTTTPPASLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTS 460
            M T+++ E  Q TT++P   L+ +V E+YRKI+EHAETYPYVW SY +VYGG  LW  YRWRKLRKTEDRVRALQERLRKLV+ EE+A S T+
Sbjct:    1 MTTEQKREDDQSTTSSPAVGLNGIV-EQYRKIREHAETYPYVWASYLVVYGGFGLWATYRWRKLRKTEDRVRALQERLRKLVDTEESAGSATA 92

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: I1KZ96_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.420e-33
Identity = 67/119 (56.30%), Postives = 80/119 (67.23%), Query Frame = 2

Query:  182 MATQREGEASQETTTTPPASLSE-------------LVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTSVKKAPTSDDKVPK 499
            MA Q + E  Q T++TPP   SE              ++++YRK+KEHAETYPYVW SY +VYGG ALWT YRWRKLRKTEDRVR  QERLRKL+E EE+ +S   V+K  TS DK  K
Sbjct:    1 MANQSK-ENQQATSSTPPIQKSEEDQAASTTMGFKDSLEKQYRKVKEHAETYPYVWASYIVVYGGFALWTTYRWRKLRKTEDRVRTHQERLRKLIEAEESTSSAKVVEKGSTSSDKPSK 118

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: A0A0B2PHI7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_038046 PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.420e-33
Identity = 67/119 (56.30%), Postives = 80/119 (67.23%), Query Frame = 2

Query:  182 MATQREGEASQETTTTPPASLSE-------------LVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTSVKKAPTSDDKVPK 499
            MA Q + E  Q T++TPP   SE              ++++YRK+KEHAETYPYVW SY +VYGG ALWT YRWRKLRKTEDRVR  QERLRKL+E EE+ +S   V+K  TS DK  K
Sbjct:    1 MANQSK-ENQQATSSTPPIQKSEEDQAASTTMGFKDSLEKQYRKVKEHAETYPYVWASYIVVYGGFALWTTYRWRKLRKTEDRVRTHQERLRKLIEAEESTSSAKVVEKGSTSSDKPSK 118

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: M5X726_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019061mg PE=4 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.787e-33
Identity = 67/98 (68.37%), Postives = 78/98 (79.59%), Query Frame = 2

Query:  182 MATQREGEASQETTTTPPAS-LSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEA-ANSGTSVKK 469
            MAT+ +GE  Q+TT+T  A+ L   V E+YR+IKEHAETYPYVWGSY +VYGGLALWT YRWRKLRKTEDRVRALQ+RLRK    EEA A   T+V+K
Sbjct:    1 MATEEQGEEKQQTTSTQAAAGLGGAVVEKYRQIKEHAETYPYVWGSYIVVYGGLALWTAYRWRKLRKTEDRVRALQDRLRKHYAAEEASAIPPTTVRK 98

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: A0A022RDX9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016328mg PE=4 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.404e-32
Identity = 61/104 (58.65%), Postives = 74/104 (71.15%), Query Frame = 2

Query:  194 REGEASQETTTTPPASLSELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTSVKKAPTS---DDKVP 496
            + G+  QE +    A     + E+YRK+KEHAETYPYVWGSY LVYGG  LW  YRWRKLRKTEDRVR LQERLRKLVE E++ +S T  +++P S    DK+P
Sbjct:   14 QSGDGQQERSQVAAAHWGGPIGEQYRKMKEHAETYPYVWGSYILVYGGFGLWLTYRWRKLRKTEDRVRGLQERLRKLVEAEKSTSSATVTEQSPNSASLTDKLP 117

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Match: K4C6E5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc06g054590.2 PE=4 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.463e-32
Identity = 67/111 (60.36%), Postives = 81/111 (72.97%), Query Frame = 2

Query:  179 TMATQREGEASQETTTTPPASLS-------ELVQERYRKIKEHAETYPYVWGSYTLVYGGLALWTIYRWRKLRKTEDRVRALQERLRKLVENEEAANSGTSVKKAPTSDDK 490
            TMATQ + E  +  TT    S S         +QE+Y+K+KE+AETYPYVWGSYT+VYGGL LW  YRWR+LRKTEDRVR LQ+RLRKLV+ EE+ +S  SV KAP+S DK
Sbjct:   25 TMATQEKSEVIEPPTTVDKQSESYSYTTWAGKIQEQYQKVKENAETYPYVWGSYTVVYGGLGLWFAYRWRRLRKTEDRVRVLQDRLRKLVQAEESTSS--SVTKAPSSSDK 133

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2TXM7_GOSRA	2.740e-66	97.17	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061FJ10_THECC	1.010e-54	82.08	Uncharacterized protein OS=Theobroma cacao GN=TCM_...	[more]
B9HEY7_POPTR	2.908e-36	62.26	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
B9H4B9_POPTR	4.848e-36	68.13	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
V4V0T1_9ROSI	1.021e-33	65.59	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
I1KZ96_SOYBN	2.420e-33	56.30	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0B2PHI7_GLYSO	2.420e-33	56.30	Uncharacterized protein OS=Glycine soja GN=glysoja...	[more]
M5X726_PRUPE	3.787e-33	68.37	Uncharacterized protein (Fragment) OS=Prunus persi...	[more]
A0A022RDX9_ERYGU	1.404e-32	58.65	Uncharacterized protein OS=Erythranthe guttata GN=...	[more]
K4C6E5_SOLLC	2.463e-32	60.36	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0004382 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 72..92
None	No IPR available	PANTHER	PTHR36794:SF1	SUBFAMILY NOT NAMED	coord: 1..111
None	No IPR available	PANTHER	PTHR36794	FAMILY NOT NAMED	coord: 1..111
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 49..67
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..48
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 68..114
None	No IPR available	TMHMM	TMhelix		coord: 47..69

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0004382 ID=g.arboreum_cottongen_reftransV1_0004382; Name=g.arboreum_cottongen_reftransV1_0004382; organism=Gossypium arboreum; type=contig; length=639bp
ATTTTATTTATTTTTCCGCCGCCGCCATCTCCATTTCCATCTTCGTCGGT
TTTTTTTACTGTTTCTTCTTCGTCTTTCTCGAGCTCCGGCCACGCGCTCG
TGTCAGTGAGTGTCGCGGTTTGGCGCCGTAAACGACTAGTCCGAGCAACC
GAGGGGTTTGATAATCATTCAAAGGCTGACAATGGCGACTCAGCGAGAAG
GGGAAGCGTCTCAGGAAACTACAACTACTCCGCCGGCTAGCCTGTCGGAA
TTGGTGCAGGAAAGATATCGGAAAATCAAGGAGCACGCTGAAACGTATCC
TTATGTATGGGGGTCTTACACGCTTGTTTATGGCGGTTTGGCACTTTGGA
CTATTTACAGATGGAGGAAACTTCGTAAGACTGAGGATCGAGTGCGAGCC
CTTCAAGAAAGACTCCGGAAGCTTGTCGAAAATGAAGAAGCAGCAAACTC
TGGTACATCTGTTAAAAAGGCTCCAACCTCTGATGATAAAGTTCCCAAGT
AGTTATACGTTAAAAGTTTAGTTTCCCTTTTTATGTAGGAAAAAGAAAGT
TCACATTCAGTTTGAGAATGCATTATTAAGGTTTTTGATGAACTAGCTAG
TATTGATGAAGATAATGTATGAATTTTGGGAGAAAAAAA

Search form

g.arboreum_cottongen_reftransV1_0004382, g.arboreum_cottongen_reftransV1_0004382 (contig) Gossypium arboreum

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