g.arboreum_cottongen_reftransV1_0021276, g.arboreum_cottongen_reftransV1_0021276 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A0B0NHX0_GOSAR (Putative amino-acid racemase OS=Gossypium arboreum GN=F383_01324 PE=4 SV=1) HSP 1 Score: 426.787 bits (1096), Expect = 4.949e-146 Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = -1 Query: 340 PALDGGRRPVHSSEVNGEHIIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVHRKT 957 PALDGGRRPVHSSEVNGEHIIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVHRKT Sbjct: 121 PALDGGRRPVHSSEVNGEHIIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVHRKT 326
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A0D2THP7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G019200 PE=4 SV=1) HSP 1 Score: 411.379 bits (1056), Expect = 4.362e-140 Identity = 199/206 (96.60%), Postives = 201/206 (97.57%), Query Frame = -1 Query: 340 PALDGGRRPVHSSEVNGEHIIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVHRKT 957 PALDGGRRPVHSSEVN EHIIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESC LPFFHIGDCVARELKEAKLKP+DAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPA ESWNQRDIEGARNLLRIAIQVLLIRAVN+VILASD LQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKV RKT Sbjct: 121 PALDGGRRPVHSSEVNDEHIIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCSLPFFHIGDCVARELKEAKLKPLDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAAESWNQRDIEGARNLLRIAIQVLLIRAVNIVILASDVLQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVRRKT 326
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A061GM80_THECC (Amino-acid racemase isoform 2 OS=Theobroma cacao GN=TCM_038032 PE=4 SV=1) HSP 1 Score: 330.872 bits (847), Expect = 2.741e-108 Identity = 162/215 (75.35%), Postives = 186/215 (86.51%), Query Frame = -1 Query: 340 PALDGG---RRPVHSS-----EVNGEH-IIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVHRKT 957 PALD G + +HSS + G H I++NLR KR+FLE+SGARCIV PCHIS+AWHDEISE C LPFFH+G+CVARELKEAKLKP+DAGS+VRIGVL+T ETI YQ+KLQ QGFEVVLPDK TMEHIL+PA+ES N+RD+EGARNLLR+AIQVLLI AVNVVILASDELQN+LPREDPL+KKC+DPMDALAR+TIKWAKSAKKVH+KT Sbjct: 122 PALDEGLISQGSIHSSSGEIAQKEGNHEPIVENLRNKRVFLEQSGARCIVTPCHISHAWHDEISEGCSLPFFHVGECVARELKEAKLKPLDAGSTVRIGVLATYETIGAGFYQEKLQKQGFEVVLPDKGTMEHILIPAIESLNRRDMEGARNLLRVAIQVLLISAVNVVILASDELQNLLPREDPLVKKCIDPMDALARSTIKWAKSAKKVHKKT 336
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A0D2PLJ3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G040900 PE=4 SV=1) HSP 1 Score: 315.849 bits (808), Expect = 2.423e-102 Identity = 156/216 (72.22%), Postives = 179/216 (82.87%), Query Frame = -1 Query: 340 PALDGG---RRPVHSS-------EVNGEHIIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVHRKT 957 P++DG + +HSS E N E I++NLR KR+FLE+SGA CIVMPCHISNAWH++ISE C LPFFHIG+CVA+ELKEAKLKP GS+VRIGVL ETIA A YQ +L+NQGFEVVLPDK TMEHIL+PA+ES N+RD EGARNLLRIAIQ+LLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALAR+TIKWAK+ K+ +K Sbjct: 121 PSIDGALASQASIHSSFDETAQNEANHE-AIVRNLRHKRVFLEQSGASCIVMPCHISNAWHEQISEGCSLPFFHIGECVAKELKEAKLKPHGTGSNVRIGVLPATETIAAASYQDQLENQGFEVVLPDKATMEHILIPAIESLNKRDTEGARNLLRIAIQLLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARSTIKWAKTGKQGMQKN 335
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A0B0NY59_GOSAR (Putative amino-acid racemase OS=Gossypium arboreum GN=F383_08904 PE=4 SV=1) HSP 1 Score: 314.694 bits (805), Expect = 6.637e-102 Identity = 156/216 (72.22%), Postives = 178/216 (82.41%), Query Frame = -1 Query: 340 PALDGG---RRPVHSS-------EVNGEHIIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVHRKT 957 P++D + +HSS E N E I++NLR KR+FLE+SGA CIVMPCHISNAWH++ISE C LPFFHIG+CVA+ELKEAKLKP GS+VRIGVL+ ETIA A YQ +L NQGFEVVLPDK TMEHIL+PA+ES N+RD EGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALAR+TIKWAK+ K+ +K Sbjct: 121 PSIDAALASQASIHSSFDETAQNEANHE-AIVRNLRHKRVFLEQSGASCIVMPCHISNAWHEQISEGCSLPFFHIGECVAKELKEAKLKPHGTGSNVRIGVLAATETIAAASYQDQLGNQGFEVVLPDKATMEHILIPAIESLNKRDTEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARSTIKWAKTGKQGMQKN 335
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A061GV22_THECC (Amino-acid racemase isoform 1 OS=Theobroma cacao GN=TCM_038032 PE=4 SV=1) HSP 1 Score: 303.138 bits (775), Expect = 9.171e-97 Identity = 152/210 (72.38%), Postives = 175/210 (83.33%), Query Frame = -1 Query: 355 PALDGG---RRPVHSS-----EVNGEH-IIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKK 957 PALD G + +HSS + G H I++NLR KR+FLE+SGARCIV PCHIS+AWHDEISE C LPFFH+G+CVARELKEAKLKP+DAGS+VRIGVL+T ETI YQ+KLQ Q PDK TMEHIL+PA+ES N+RD+EGARNLLR+AIQVLLI AVNVVILASDELQN+LPREDPL+KKC+DPMDALAR+TIKWAKSAKK Sbjct: 161 PALDEGLISQGSIHSSSGEIAQKEGNHEPIVENLRNKRVFLEQSGARCIVTPCHISHAWHDEISEGCSLPFFHVGECVARELKEAKLKPLDAGSTVRIGVLATYETIGAGFYQEKLQKQ------PDKGTMEHILIPAIESLNRRDMEGARNLLRVAIQVLLISAVNVVILASDELQNLLPREDPLVKKCIDPMDALARSTIKWAKSAKK 364
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A067GXX7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017159mg PE=4 SV=1) HSP 1 Score: 290.041 bits (741), Expect = 2.332e-92 Identity = 131/198 (66.16%), Postives = 165/198 (83.33%), Query Frame = -1 Query: 340 SSEVNGEHI---IIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVHRKT 924 S V +HI + QNLR KR FLE++GARCIVMPCHIS+AWH ++SE C +PF H+G+CVA+ELKEAKLKP++AGS VRIGVL+T T++ YQ+KLQNQGFEVVLPDK TMEH+++P +E+ N RD+EGARNLLRI IQ+LL+RAVN VI+ SDE+Q +LP++DPLLKKC+DPMDALAR+T+ WA+S KKV T Sbjct: 139 SKTVQLDHIRGAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSNKKVRNTT 336
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: V4TUM4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008863mg PE=4 SV=1) HSP 1 Score: 290.041 bits (741), Expect = 2.332e-92 Identity = 131/198 (66.16%), Postives = 165/198 (83.33%), Query Frame = -1 Query: 340 SSEVNGEHI---IIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVHRKT 924 S V +HI + QNLR KR FLE++GARCIVMPCHIS+AWH ++SE C +PF H+G+CVA+ELKEAKLKP++AGS VRIGVL+T T++ YQ+KLQNQGFEVVLPDK TMEH+++P +E+ N RD+EGARNLLRI IQ+LL+RAVN VI+ SDE+Q +LP++DPLLKKC+DPMDALAR+T+ WA+S KKV T Sbjct: 139 SKTVQLDHIRGAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSNKKVRNTT 336
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A067GYA4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017159mg PE=4 SV=1) HSP 1 Score: 286.96 bits (733), Expect = 1.415e-90 Identity = 129/194 (66.49%), Postives = 164/194 (84.54%), Query Frame = -1 Query: 352 SSEVNGEHI---IIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKV 924 S V +HI + QNLR KR FLE++GARCIVMPCHIS+AWH ++SE C +PF H+G+CVA+ELKEAKLKP++AGS VRIGVL+T T++ YQ+KLQNQGFEVVLPDK TMEH+++P +E+ N RD+EGARNLLRI IQ+LL+RAVN VI+ SDE+Q +LP++DPLLKKC+DPMDALAR+T+ WA+S KK+ Sbjct: 139 SKTVQLDHIRGAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSNKKL 332
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: B9SEP2_RICCO (Racemase and epimerase, acting on amino acids and derivatives, putative OS=Ricinus communis GN=RCOM_0221080 PE=4 SV=1) HSP 1 Score: 280.411 bits (716), Expect = 4.634e-89 Identity = 129/191 (67.54%), Postives = 164/191 (85.86%), Query Frame = -1 Query: 346 EVNGEHIIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVHR 918 E+N + II +NLR KR FL++SGARCIVMPCH+S+AW++EISE CLLPFFH+GDCVA EL+EA+LKP++AGS VRIG+L++ T+ YQ+KLQ+QGFEVVLPDK T +HIL+PA+E+ +RDIEGA+NLLR+AIQ+LL+RA N+VILASDELQ +LP+ DPL KKC+DPMDALAR+ IKWAK KV + Sbjct: 111 ELNADEII-ENLRCKRKFLDQSGARCIVMPCHLSHAWYNEISEGCLLPFFHVGDCVASELREAELKPLEAGSEVRIGMLASSATLTAGFYQEKLQSQGFEVVLPDKATTDHILIPAIEALRRRDIEGAQNLLRVAIQILLMRAANIVILASDELQGLLPQNDPLQKKCIDPMDALARSIIKWAKHKAKVQK 300
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy Swiss-Prot
Match: RACD_PYRHO (Aspartate racemase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0670 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 9.411e-13 Identity = 42/165 (25.45%), Postives = 84/165 (50.91%), Query Frame = -1 Query: 370 LEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWA 864 LE+ GA I+MPC+ ++A+ ++I ++ +P + + A+++KE K + G+L+T TI Y+++ G E++ P ++ + ++ E +++ R LL ++L R +I E+ +L ++D L +DPMD +A +K A Sbjct: 70 LEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEETAKKVKELGFK--------KAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVL-KQDDLKVPLIDPMDVIAEVAVKVA 225
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy Swiss-Prot
Match: RACD_THEK8 (Aspartate racemase OS=Thermococcus sp. (strain KS-8) PE=1 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 3.086e-9 Identity = 43/165 (26.06%), Postives = 78/165 (47.27%), Query Frame = -1 Query: 370 LEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWA 864 LE+ GA I+MPC+ ++ + I S + P + + A+ ++E L+ ++G+L+T TI Y + L +G + +P+K+ ++ E ++E R LL + + L R +I E+ +L D L +DPMD +A +K A Sbjct: 72 LEECGADFIIMPCNTAHFFAGTIQSSVIYPLVSMIEETAKRIEEMGLR--------KVGLLATDGTIKGMVYHRALLKRGIHIAVPNKKDQGLVMKAIYEGVKAGNLELGRELL-LKVAKKLERRSEGIIAGCTEVSVVLKPGD-LTVPLIDPMDVIAERAVKLA 226
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy Swiss-Prot
Match: YPNL_PECCC (Uncharacterized protein in pnlA 3'region (Fragment) OS=Pectobacterium carotovorum subsp. carotovorum PE=3 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 2.027e-7 Identity = 39/149 (26.17%), Postives = 68/149 (45.64%), Query Frame = -1 Query: 373 WHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPRE---DPLLKKCMDPMDALARTTIKW 810 W +++ + C I D + +K A ++ R+G+L+T T+ YQ L + PD + +H +M ++ ++ DI GA +LL LL V +IL EL IL +E P + +D + L + T++W Sbjct: 1 WFNDLKQQCRAEMISIIDVTCQAIKHA--------NTTRVGLLATTATVKARIYQDNLITDNIDCYTPD-DADQHQVMESIYAYKSGDIAGAYSLLSPVKDRLLQAGVEKIILGCTELPLILEQEVRTSP--QHYVDATEELIKKTVEW 138 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 3
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0021276 ID=g.arboreum_cottongen_reftransV1_0021276; Name=g.arboreum_cottongen_reftransV1_0021276; organism=Gossypium arboreum; type=contig; length=957bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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