g.arboreum_cottongen_reftransV1_0021276, g.arboreum_cottongen_reftransV1_0021276 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0021276
Unique Nameg.arboreum_cottongen_reftransV1_0021276
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length957
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0021276:1..957 .
Chr11:56984817..56986117 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A0B0NHX0_GOSAR (Putative amino-acid racemase OS=Gossypium arboreum GN=F383_01324 PE=4 SV=1)

HSP 1 Score: 426.787 bits (1096), Expect = 4.949e-146
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = -1
Query:  340 PALDGGRRPVHSSEVNGEHIIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVHRKT 957
            PALDGGRRPVHSSEVNGEHIIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVHRKT
Sbjct:  121 PALDGGRRPVHSSEVNGEHIIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVHRKT 326          
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A0D2THP7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G019200 PE=4 SV=1)

HSP 1 Score: 411.379 bits (1056), Expect = 4.362e-140
Identity = 199/206 (96.60%), Postives = 201/206 (97.57%), Query Frame = -1
Query:  340 PALDGGRRPVHSSEVNGEHIIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVHRKT 957
            PALDGGRRPVHSSEVN EHIIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESC LPFFHIGDCVARELKEAKLKP+DAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPA ESWNQRDIEGARNLLRIAIQVLLIRAVN+VILASD LQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKV RKT
Sbjct:  121 PALDGGRRPVHSSEVNDEHIIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCSLPFFHIGDCVARELKEAKLKPLDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAAESWNQRDIEGARNLLRIAIQVLLIRAVNIVILASDVLQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVRRKT 326          
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A061GM80_THECC (Amino-acid racemase isoform 2 OS=Theobroma cacao GN=TCM_038032 PE=4 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 2.741e-108
Identity = 162/215 (75.35%), Postives = 186/215 (86.51%), Query Frame = -1
Query:  340 PALDGG---RRPVHSS-----EVNGEH-IIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVHRKT 957
            PALD G   +  +HSS     +  G H  I++NLR KR+FLE+SGARCIV PCHIS+AWHDEISE C LPFFH+G+CVARELKEAKLKP+DAGS+VRIGVL+T ETI    YQ+KLQ QGFEVVLPDK TMEHIL+PA+ES N+RD+EGARNLLR+AIQVLLI AVNVVILASDELQN+LPREDPL+KKC+DPMDALAR+TIKWAKSAKKVH+KT
Sbjct:  122 PALDEGLISQGSIHSSSGEIAQKEGNHEPIVENLRNKRVFLEQSGARCIVTPCHISHAWHDEISEGCSLPFFHVGECVARELKEAKLKPLDAGSTVRIGVLATYETIGAGFYQEKLQKQGFEVVLPDKGTMEHILIPAIESLNRRDMEGARNLLRVAIQVLLISAVNVVILASDELQNLLPREDPLVKKCIDPMDALARSTIKWAKSAKKVHKKT 336          
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A0D2PLJ3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G040900 PE=4 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 2.423e-102
Identity = 156/216 (72.22%), Postives = 179/216 (82.87%), Query Frame = -1
Query:  340 PALDGG---RRPVHSS-------EVNGEHIIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVHRKT 957
            P++DG    +  +HSS       E N E  I++NLR KR+FLE+SGA CIVMPCHISNAWH++ISE C LPFFHIG+CVA+ELKEAKLKP   GS+VRIGVL   ETIA A YQ +L+NQGFEVVLPDK TMEHIL+PA+ES N+RD EGARNLLRIAIQ+LLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALAR+TIKWAK+ K+  +K 
Sbjct:  121 PSIDGALASQASIHSSFDETAQNEANHE-AIVRNLRHKRVFLEQSGASCIVMPCHISNAWHEQISEGCSLPFFHIGECVAKELKEAKLKPHGTGSNVRIGVLPATETIAAASYQDQLENQGFEVVLPDKATMEHILIPAIESLNKRDTEGARNLLRIAIQLLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARSTIKWAKTGKQGMQKN 335          
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A0B0NY59_GOSAR (Putative amino-acid racemase OS=Gossypium arboreum GN=F383_08904 PE=4 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 6.637e-102
Identity = 156/216 (72.22%), Postives = 178/216 (82.41%), Query Frame = -1
Query:  340 PALDGG---RRPVHSS-------EVNGEHIIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVHRKT 957
            P++D     +  +HSS       E N E  I++NLR KR+FLE+SGA CIVMPCHISNAWH++ISE C LPFFHIG+CVA+ELKEAKLKP   GS+VRIGVL+  ETIA A YQ +L NQGFEVVLPDK TMEHIL+PA+ES N+RD EGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALAR+TIKWAK+ K+  +K 
Sbjct:  121 PSIDAALASQASIHSSFDETAQNEANHE-AIVRNLRHKRVFLEQSGASCIVMPCHISNAWHEQISEGCSLPFFHIGECVAKELKEAKLKPHGTGSNVRIGVLAATETIAAASYQDQLGNQGFEVVLPDKATMEHILIPAIESLNKRDTEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARSTIKWAKTGKQGMQKN 335          
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A061GV22_THECC (Amino-acid racemase isoform 1 OS=Theobroma cacao GN=TCM_038032 PE=4 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 9.171e-97
Identity = 152/210 (72.38%), Postives = 175/210 (83.33%), Query Frame = -1
Query:  355 PALDGG---RRPVHSS-----EVNGEH-IIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKK 957
            PALD G   +  +HSS     +  G H  I++NLR KR+FLE+SGARCIV PCHIS+AWHDEISE C LPFFH+G+CVARELKEAKLKP+DAGS+VRIGVL+T ETI    YQ+KLQ Q      PDK TMEHIL+PA+ES N+RD+EGARNLLR+AIQVLLI AVNVVILASDELQN+LPREDPL+KKC+DPMDALAR+TIKWAKSAKK
Sbjct:  161 PALDEGLISQGSIHSSSGEIAQKEGNHEPIVENLRNKRVFLEQSGARCIVTPCHISHAWHDEISEGCSLPFFHVGECVARELKEAKLKPLDAGSTVRIGVLATYETIGAGFYQEKLQKQ------PDKGTMEHILIPAIESLNRRDMEGARNLLRVAIQVLLISAVNVVILASDELQNLLPREDPLVKKCIDPMDALARSTIKWAKSAKK 364          
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A067GXX7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017159mg PE=4 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 2.332e-92
Identity = 131/198 (66.16%), Postives = 165/198 (83.33%), Query Frame = -1
Query:  340 SSEVNGEHI---IIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVHRKT 924
            S  V  +HI   + QNLR KR FLE++GARCIVMPCHIS+AWH ++SE C +PF H+G+CVA+ELKEAKLKP++AGS VRIGVL+T  T++   YQ+KLQNQGFEVVLPDK TMEH+++P +E+ N RD+EGARNLLRI IQ+LL+RAVN VI+ SDE+Q +LP++DPLLKKC+DPMDALAR+T+ WA+S KKV   T
Sbjct:  139 SKTVQLDHIRGAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSNKKVRNTT 336          
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: V4TUM4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008863mg PE=4 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 2.332e-92
Identity = 131/198 (66.16%), Postives = 165/198 (83.33%), Query Frame = -1
Query:  340 SSEVNGEHI---IIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVHRKT 924
            S  V  +HI   + QNLR KR FLE++GARCIVMPCHIS+AWH ++SE C +PF H+G+CVA+ELKEAKLKP++AGS VRIGVL+T  T++   YQ+KLQNQGFEVVLPDK TMEH+++P +E+ N RD+EGARNLLRI IQ+LL+RAVN VI+ SDE+Q +LP++DPLLKKC+DPMDALAR+T+ WA+S KKV   T
Sbjct:  139 SKTVQLDHIRGAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSNKKVRNTT 336          
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: A0A067GYA4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017159mg PE=4 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 1.415e-90
Identity = 129/194 (66.49%), Postives = 164/194 (84.54%), Query Frame = -1
Query:  352 SSEVNGEHI---IIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKV 924
            S  V  +HI   + QNLR KR FLE++GARCIVMPCHIS+AWH ++SE C +PF H+G+CVA+ELKEAKLKP++AGS VRIGVL+T  T++   YQ+KLQNQGFEVVLPDK TMEH+++P +E+ N RD+EGARNLLRI IQ+LL+RAVN VI+ SDE+Q +LP++DPLLKKC+DPMDALAR+T+ WA+S KK+
Sbjct:  139 SKTVQLDHIRGAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSNKKL 332          
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Match: B9SEP2_RICCO (Racemase and epimerase, acting on amino acids and derivatives, putative OS=Ricinus communis GN=RCOM_0221080 PE=4 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 4.634e-89
Identity = 129/191 (67.54%), Postives = 164/191 (85.86%), Query Frame = -1
Query:  346 EVNGEHIIIQNLRQKRIFLEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWAKSAKKVHR 918
            E+N + II +NLR KR FL++SGARCIVMPCH+S+AW++EISE CLLPFFH+GDCVA EL+EA+LKP++AGS VRIG+L++  T+    YQ+KLQ+QGFEVVLPDK T +HIL+PA+E+  +RDIEGA+NLLR+AIQ+LL+RA N+VILASDELQ +LP+ DPL KKC+DPMDALAR+ IKWAK   KV +
Sbjct:  111 ELNADEII-ENLRCKRKFLDQSGARCIVMPCHLSHAWYNEISEGCLLPFFHVGDCVASELREAELKPLEAGSEVRIGMLASSATLTAGFYQEKLQSQGFEVVLPDKATTDHILIPAIEALRRRDIEGAQNLLRVAIQILLMRAANIVILASDELQGLLPQNDPLQKKCIDPMDALARSIIKWAKHKAKVQK 300          
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy Swiss-Prot
Match: RACD_PYRHO (Aspartate racemase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0670 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.411e-13
Identity = 42/165 (25.45%), Postives = 84/165 (50.91%), Query Frame = -1
Query:  370 LEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWA 864
            LE+ GA  I+MPC+ ++A+ ++I ++  +P   + +  A+++KE   K        + G+L+T  TI    Y+++    G E++ P ++  + ++    E     +++  R LL    ++L  R    +I    E+  +L ++D L    +DPMD +A   +K A
Sbjct:   70 LEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEETAKKVKELGFK--------KAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVL-KQDDLKVPLIDPMDVIAEVAVKVA 225          
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy Swiss-Prot
Match: RACD_THEK8 (Aspartate racemase OS=Thermococcus sp. (strain KS-8) PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 3.086e-9
Identity = 43/165 (26.06%), Postives = 78/165 (47.27%), Query Frame = -1
Query:  370 LEKSGARCIVMPCHISNAWHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPREDPLLKKCMDPMDALARTTIKWA 864
            LE+ GA  I+MPC+ ++ +   I  S + P   + +  A+ ++E  L+        ++G+L+T  TI    Y + L  +G  + +P+K+    ++    E     ++E  R LL + +   L R    +I    E+  +L   D L    +DPMD +A   +K A
Sbjct:   72 LEECGADFIIMPCNTAHFFAGTIQSSVIYPLVSMIEETAKRIEEMGLR--------KVGLLATDGTIKGMVYHRALLKRGIHIAVPNKKDQGLVMKAIYEGVKAGNLELGRELL-LKVAKKLERRSEGIIAGCTEVSVVLKPGD-LTVPLIDPMDVIAERAVKLA 226          
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy Swiss-Prot
Match: YPNL_PECCC (Uncharacterized protein in pnlA 3'region (Fragment) OS=Pectobacterium carotovorum subsp. carotovorum PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 2.027e-7
Identity = 39/149 (26.17%), Postives = 68/149 (45.64%), Query Frame = -1
Query:  373 WHDEISESCLLPFFHIGDCVARELKEAKLKPMDAGSSVRIGVLSTCETIAVAPYQQKLQNQGFEVVLPDKETMEHILMPAVESWNQRDIEGARNLLRIAIQVLLIRAVNVVILASDELQNILPRE---DPLLKKCMDPMDALARTTIKW 810
            W +++ + C      I D   + +K A        ++ R+G+L+T  T+    YQ  L     +   PD +  +H +M ++ ++   DI GA +LL      LL   V  +IL   EL  IL +E    P  +  +D  + L + T++W
Sbjct:    1 WFNDLKQQCRAEMISIIDVTCQAIKHA--------NTTRVGLLATTATVKARIYQDNLITDNIDCYTPD-DADQHQVMESIYAYKSGDIAGAYSLLSPVKDRLLQAGVEKIILGCTELPLILEQEVRTSP--QHYVDATEELIKKTVEW 138          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0NHX0_GOSAR4.949e-146100.00Putative amino-acid racemase OS=Gossypium arboreum... [more]
A0A0D2THP7_GOSRA4.362e-14096.60Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061GM80_THECC2.741e-10875.35Amino-acid racemase isoform 2 OS=Theobroma cacao G... [more]
A0A0D2PLJ3_GOSRA2.423e-10272.22Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0NY59_GOSAR6.637e-10272.22Putative amino-acid racemase OS=Gossypium arboreum... [more]
A0A061GV22_THECC9.171e-9772.38Amino-acid racemase isoform 1 OS=Theobroma cacao G... [more]
A0A067GXX7_CITSI2.332e-9266.16Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4TUM4_9ROSI2.332e-9266.16Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A067GYA4_CITSI1.415e-9066.49Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
B9SEP2_RICCO4.634e-8967.54Racemase and epimerase, acting on amino acids and ... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0021276 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RACD_PYRHO9.411e-1325.45Aspartate racemase OS=Pyrococcus horikoshii (strai... [more]
RACD_THEK83.086e-926.06Aspartate racemase OS=Thermococcus sp. (strain KS-... [more]
YPNL_PECCC2.027e-726.17Uncharacterized protein in pnlA 3'region (Fragment... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001920Asp/Glu racemaseGENE3D3.40.50.1860coord: 1..55
e-value: 1.2E-15
score: 57.7
IPR001920Asp/Glu racemaseGENE3D3.40.50.1860coord: 59..152
e-value: 7.8E-14
score: 51.5
IPR001920Asp/Glu racemaseSUPERFAMILY53681Aspartate/glutamate racemasecoord: 64..172
IPR001920Asp/Glu racemaseSUPERFAMILY53681Aspartate/glutamate racemasecoord: 4..51
IPR015942Asp/Glu/hydantoin racemasePFAMPF01177Asp_Glu_racecoord: 3..168
e-value: 1.8E-24
score: 86.7
NoneNo IPR availablePANTHERPTHR21198GLUTAMATE RACEMASEcoord: 1..181
NoneNo IPR availablePANTHERPTHR21198:SF7ASPARTATE-GLUTAMATE RACEMASE-LIKE PROTEINcoord: 1..181

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0021276 ID=g.arboreum_cottongen_reftransV1_0021276; Name=g.arboreum_cottongen_reftransV1_0021276; organism=Gossypium arboreum; type=contig; length=957bp
GGCGACTTGAGATGGCATCTTTTAAACATATTTCAACACGAATTGTGTTG
AATATGAAGAACATCTACTTTACAAAAATTTCATATCATCAAATGCAAAT
TAAGCCTCTGTCCCTTTTCTGTCTTTTCTTTGTATACATTCATACAGTGA
TCATTTAATTTGCTTCTAACATTATCGGTTCAGCCTTATCTTATTTGGTA
CTGTTGTTGTTGCTGTGTAAGCCTTGTCTATTTTTTTTTATTGACACCAT
AGTATGAACAAGATGTTGTGCACTTTCGATAGGCAAATATACCCTTACAA
GTTACAAGACAGCAAGAGTTTCCATGCTTGTATAGTTCAAGTTTTCCTAT
GTACCTTCTTTGCAGATTTAGCCCATTTTATAGTTGTTCTGGCTAAAGCA
TCCATGGGATCCATACATTTTTTAAGAAGAGGATCCTCTCGAGGTAAAAT
GTTCTGTAGTTCATCCGAAGCAAGGATGACAACATTCACAGCTCTAATTA
AAAGAACCTGGATTGCAATTCTCAGCAAGTTTCGAGCCCCTTCTATGTCC
CTTTGGTTCCATGATTCAACTGCTGGCATTAGAATATGTTCCATCGTTTC
CTTGTCTGGCAAAACCACTTCAAAACCCTGATTCTGTAATTTTTGTTGAT
ATGGAGCAACAGCTATGGTTTCACATGTGGAAAGTACCCCAATTCGAACA
CTGCTCCCAGCATCCATTGGCTTCAATTTCGCTTCCTTGAGCTCCCTGGC
AACACAGTCACCGATGTGAAAAAAGGGCAGTAAGCAGCTCTCAGATATCT
CATCATGCCATGCATTTGAGATATGGCATGGCATCACAATGCAACGAGCT
CCAGATTTCTCGAGAAATATTCTTTTCTGCCTCAGATTCTGGATGATAAT
ATGTTCACCATTTACTTCCGATGAATGAACCGGACGGCGGCCGCCGTCTA
GGGCCGG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001920Asp/Glu_race
IPR015942Asp/Glu/hydantoin_racemase
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0006807nitrogen compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016855racemase and epimerase activity, acting on amino acids and derivatives
GO:0036361racemase activity, acting on amino acids and derivatives