g.arboreum_cottongen_reftransV1_0001990, g.arboreum_cottongen_reftransV1_0001990 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001990 vs. ExPASy TrEMBL
Match: A0A0B0PKP1_GOSAR (Helicase MOM1-like protein OS=Gossypium arboreum GN=F383_00608 PE=4 SV=1) HSP 1 Score: 532.332 bits (1370), Expect = 2.487e-169 Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = -1 Query: 3 NRGKKSVNLGAATAEASGVRRSPRETISKKNMTPPSSSGTRKSERLEKQTANLNSTTSSGXXXXXXXXXXXXXKNASPLRRSDRVKMPXXXXXXXXXXXXXSLDLLNTXXXXXXXXXXXKQLTGTVEDNKIEREVEQANEKQKKRMDARAYKALFRKQPKKADETDRNEDLNGTNSGRREEDVLEEFIERSHERTEVTSTSQPAEEALKGKNEHNLFLTSEKDSCKDISSNGGDLQIPKNGLITEEMNDNAEKAAQDNLQSPHFAKSIMPGGVLGCDISVEMVMPSENKCHDIDIDSVASSKISSNNI 926 NRGKKSVNLGAATAEASGVRRSPRETISKKNMTPPSSSGTRKSERLEKQTANLNSTTSSGKRKSERIEKKKKKKNASPLRRSDRVKMPSSSASSGSKRSDKSLDLLNTKRKKEKKKKSVKQLTGTVEDNKIEREVEQANEKQKKRMDARAYKALFRKQPKKADETDRNEDLNGTNSGRREEDVLEEFIERSHERTEVTSTSQPAEEALKGKNEHNLFLTSEKDSCKDISSNGGDLQIPKNGLITEEMNDNAEKAAQDNLQSPHFAKSIMPGGVLGCDISVEMVMPSENKCHDIDIDSVASSKISSNNI Sbjct: 95 NRGKKSVNLGAATAEASGVRRSPRETISKKNMTPPSSSGTRKSERLEKQTANLNSTTSSGKRKSERIEKKKKKKNASPLRRSDRVKMPSSSASSGSKRSDKSLDLLNTKRKKEKKKKSVKQLTGTVEDNKIEREVEQANEKQKKRMDARAYKALFRKQPKKADETDRNEDLNGTNSGRREEDVLEEFIERSHERTEVTSTSQPAEEALKGKNEHNLFLTSEKDSCKDISSNGGDLQIPKNGLITEEMNDNAEKAAQDNLQSPHFAKSIMPGGVLGCDISVEMVMPSENKCHDIDIDSVASSKISSNNI 402
BLAST of g.arboreum_cottongen_reftransV1_0001990 vs. ExPASy TrEMBL
Match: A0A0D2UCZ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G108800 PE=4 SV=1) HSP 1 Score: 509.605 bits (1311), Expect = 2.564e-161 Identity = 294/308 (95.45%), Postives = 296/308 (96.10%), Query Frame = -1 Query: 3 NRGKKSVNLGAATAEASGVRRSPRETISKKNMTPPSSSGTRKSERLEKQTANLNSTTSSGXXXXXXXXXXXXXKNASPLRRSDRVKMPXXXXXXXXXXXXXSLDLLNTXXXXXXXXXXXKQLTGTVEDNKIEREVEQANEKQKKRMDARAYKALFRKQPKKADETDRNEDLNGTNSGRREEDVLEEFIERSHERTEVTSTSQPAEEALKGKNEHNLFLTSEKDSCKDISSNGGDLQIPKNGLITEEMNDNAEKAAQDNLQSPHFAKSIMPGGVLGCDISVEMVMPSENKCHDIDIDSVASSKISSNNI 926 NRGKKSVN GAATAEASGVRRSPRET+SKKNMTPPSSSGTRKSERLEKQTANLNS T SGKR SERIEKKKKKKNASPLRRSDRVKMPSSSASSGSKR DKSLDLLNTKRKKEKKKKSVKQL GTVEDNKIEREVEQANEKQKKRMDARAYKALFRKQPKK DETDRNEDLNGTNSGRREED LEEFIERSHERTEVTSTSQP EEALKGKNEHNLFLTSEKDSCKDISSNGGDLQIPKNGLI EEMNDNAEKAAQDNLQSPH AKSIMPGGVLGCDISVEMVMPSENKCHD+DIDSVAS KISSNNI Sbjct: 95 NRGKKSVNSGAATAEASGVRRSPRETVSKKNMTPPSSSGTRKSERLEKQTANLNSMTPSGKRTSERIEKKKKKKNASPLRRSDRVKMPSSSASSGSKRFDKSLDLLNTKRKKEKKKKSVKQLPGTVEDNKIEREVEQANEKQKKRMDARAYKALFRKQPKKVDETDRNEDLNGTNSGRREEDFLEEFIERSHERTEVTSTSQPVEEALKGKNEHNLFLTSEKDSCKDISSNGGDLQIPKNGLIAEEMNDNAEKAAQDNLQSPHLAKSIMPGGVLGCDISVEMVMPSENKCHDMDIDSVASPKISSNNI 402
BLAST of g.arboreum_cottongen_reftransV1_0001990 vs. ExPASy TrEMBL
Match: A0A0D2TFZ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G108800 PE=4 SV=1) HSP 1 Score: 509.605 bits (1311), Expect = 3.433e-161 Identity = 294/308 (95.45%), Postives = 296/308 (96.10%), Query Frame = -1 Query: 3 NRGKKSVNLGAATAEASGVRRSPRETISKKNMTPPSSSGTRKSERLEKQTANLNSTTSSGXXXXXXXXXXXXXKNASPLRRSDRVKMPXXXXXXXXXXXXXSLDLLNTXXXXXXXXXXXKQLTGTVEDNKIEREVEQANEKQKKRMDARAYKALFRKQPKKADETDRNEDLNGTNSGRREEDVLEEFIERSHERTEVTSTSQPAEEALKGKNEHNLFLTSEKDSCKDISSNGGDLQIPKNGLITEEMNDNAEKAAQDNLQSPHFAKSIMPGGVLGCDISVEMVMPSENKCHDIDIDSVASSKISSNNI 926 NRGKKSVN GAATAEASGVRRSPRET+SKKNMTPPSSSGTRKSERLEKQTANLNS T SGKR SERIEKKKKKKNASPLRRSDRVKMPSSSASSGSKR DKSLDLLNTKRKKEKKKKSVKQL GTVEDNKIEREVEQANEKQKKRMDARAYKALFRKQPKK DETDRNEDLNGTNSGRREED LEEFIERSHERTEVTSTSQP EEALKGKNEHNLFLTSEKDSCKDISSNGGDLQIPKNGLI EEMNDNAEKAAQDNLQSPH AKSIMPGGVLGCDISVEMVMPSENKCHD+DIDSVAS KISSNNI Sbjct: 95 NRGKKSVNSGAATAEASGVRRSPRETVSKKNMTPPSSSGTRKSERLEKQTANLNSMTPSGKRTSERIEKKKKKKNASPLRRSDRVKMPSSSASSGSKRFDKSLDLLNTKRKKEKKKKSVKQLPGTVEDNKIEREVEQANEKQKKRMDARAYKALFRKQPKKVDETDRNEDLNGTNSGRREEDFLEEFIERSHERTEVTSTSQPVEEALKGKNEHNLFLTSEKDSCKDISSNGGDLQIPKNGLIAEEMNDNAEKAAQDNLQSPHLAKSIMPGGVLGCDISVEMVMPSENKCHDMDIDSVASPKISSNNI 402
BLAST of g.arboreum_cottongen_reftransV1_0001990 vs. ExPASy TrEMBL
Match: A0A0D2RQM9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G108800 PE=4 SV=1) HSP 1 Score: 452.595 bits (1163), Expect = 5.668e-142 Identity = 265/277 (95.67%), Postives = 266/277 (96.03%), Query Frame = -1 Query: 3 MTPPSSSGTRKSERLEKQTANLNSTTSSGXXXXXXXXXXXXXKNASPLRRSDRVKMPXXXXXXXXXXXXXSLDLLNTXXXXXXXXXXXKQLTGTVEDNKIEREVEQANEKQKKRMDARAYKALFRKQPKKADETDRNEDLNGTNSGRREEDVLEEFIERSHERTEVTSTSQPAEEALKGKNEHNLFLTSEKDSCKDISSNGGDLQIPKNGLITEEMNDNAEKAAQDNLQSPHFAKSIMPGGVLGCDISVEMVMPSENKCHDIDIDSVASSKISSNNI 833 MTPPSSSGTRKSERLEKQTANLNS T SGKR SERIEKKKKKKNASPLRRSDRVKMPSSSASSGSKR DKSLDLLNTKRKKEKKKKSVKQL GTVEDNKIEREVEQANEKQKKRMDARAYKALFRKQPKK DETDRNEDLNGTNSGRREED LEEFIERSHERTEVTSTSQP EEALKGKNEHNLFLTSEKDSCKDISSNGGDLQIPKNGLI EEMNDNAEKAAQDNLQSPH AKSIMPGGVLGCDISVEMVMPSENKCHD+DIDSVAS KISSNNI Sbjct: 1 MTPPSSSGTRKSERLEKQTANLNSMTPSGKRTSERIEKKKKKKNASPLRRSDRVKMPSSSASSGSKRFDKSLDLLNTKRKKEKKKKSVKQLPGTVEDNKIEREVEQANEKQKKRMDARAYKALFRKQPKKVDETDRNEDLNGTNSGRREEDFLEEFIERSHERTEVTSTSQPVEEALKGKNEHNLFLTSEKDSCKDISSNGGDLQIPKNGLIAEEMNDNAEKAAQDNLQSPHLAKSIMPGGVLGCDISVEMVMPSENKCHDMDIDSVASPKISSNNI 277
BLAST of g.arboreum_cottongen_reftransV1_0001990 vs. ExPASy TrEMBL
Match: A0A0D2Q5A2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G108800 PE=4 SV=1) HSP 1 Score: 453.366 bits (1165), Expect = 6.986e-142 Identity = 265/277 (95.67%), Postives = 266/277 (96.03%), Query Frame = -1 Query: 3 MTPPSSSGTRKSERLEKQTANLNSTTSSGXXXXXXXXXXXXXKNASPLRRSDRVKMPXXXXXXXXXXXXXSLDLLNTXXXXXXXXXXXKQLTGTVEDNKIEREVEQANEKQKKRMDARAYKALFRKQPKKADETDRNEDLNGTNSGRREEDVLEEFIERSHERTEVTSTSQPAEEALKGKNEHNLFLTSEKDSCKDISSNGGDLQIPKNGLITEEMNDNAEKAAQDNLQSPHFAKSIMPGGVLGCDISVEMVMPSENKCHDIDIDSVASSKISSNNI 833 MTPPSSSGTRKSERLEKQTANLNS T SGKR SERIEKKKKKKNASPLRRSDRVKMPSSSASSGSKR DKSLDLLNTKRKKEKKKKSVKQL GTVEDNKIEREVEQANEKQKKRMDARAYKALFRKQPKK DETDRNEDLNGTNSGRREED LEEFIERSHERTEVTSTSQP EEALKGKNEHNLFLTSEKDSCKDISSNGGDLQIPKNGLI EEMNDNAEKAAQDNLQSPH AKSIMPGGVLGCDISVEMVMPSENKCHD+DIDSVAS KISSNNI Sbjct: 1 MTPPSSSGTRKSERLEKQTANLNSMTPSGKRTSERIEKKKKKKNASPLRRSDRVKMPSSSASSGSKRFDKSLDLLNTKRKKEKKKKSVKQLPGTVEDNKIEREVEQANEKQKKRMDARAYKALFRKQPKKVDETDRNEDLNGTNSGRREEDFLEEFIERSHERTEVTSTSQPVEEALKGKNEHNLFLTSEKDSCKDISSNGGDLQIPKNGLIAEEMNDNAEKAAQDNLQSPHLAKSIMPGGVLGCDISVEMVMPSENKCHDMDIDSVASPKISSNNI 277
BLAST of g.arboreum_cottongen_reftransV1_0001990 vs. ExPASy TrEMBL
Match: A0A061GY85_THECC (Chromatin remodeling complex subunit, putative isoform 2 OS=Theobroma cacao GN=TCM_042089 PE=4 SV=1) HSP 1 Score: 256.529 bits (654), Expect = 9.255e-73 Identity = 186/310 (60.00%), Postives = 226/310 (72.90%), Query Frame = -1 Query: 3 GKKSVNLGAATAEASGVRRSPRETISKKNMTPPSSSGTRKSERLEKQTANLNSTTSSGXXXXXXXXXXXXXKNASPLRRSDRVKMPXXXXXXXXXXXXXSLDLLNTXXXXXXXXXXXKQLTG-TVEDNKIEREVEQANEKQKKRMDARAYKALFRKQPKKADETDRNEDLNGTNSGRREEDVLEEFIERSHERTEVTSTSQPAEEALKGKNEHNLFLTSEKDSCKDISSNGGDLQIPKNGLITEEMNDNAEKAAQDNLQSPHFAKSIMPGGVLGCDISVEM---VMPSENKCHDIDIDSVASSKISSNNI 920 GKKSVN GA+TAE SG RRS RET+SKK+M P SSSGTRKSERLEKQT+N N+ T + + E+ +K+K+ PLRRS+R KMPS S SSGSK+SDKSLD L+ KRKKEKK+KSVKQLT TVE NKIE + Q +E QKKRMDARAY+A+FRKQ K A+ TD +DLN T+S RR+ED L+ ER+ E T TSQ EEA + NEH LF TS+KDSCKD+SSNG L++ K+GL+ EMND+AEKA QD P S++ +L C+IS+EM V+ SE K HDIDIDSVAS SS +I Sbjct: 26 GKKSVNSGASTAEVSGFRRSLRETLSKKSMNPLSSSGTRKSERLEKQTSNSNTMT---RPSKRKSERIEKQKHRCPLRRSERGKMPSLSGSSGSKKSDKSLDSLDAKRKKEKKEKSVKQLTMETVEVNKIENKDGQVDEAQKKRMDARAYRAMFRKQLKSANGTDHGDDLNRTDSERRDEDPLKVHAERTCEITMARGTSQSVEEAPENDNEHTLFPTSQKDSCKDMSSNGDGLRVSKSGLVAIEMNDDAEKAVQD----PELVNSMLHERILDCNISLEMVQEVVFSERKRHDIDIDSVASPITSSKDI 328
BLAST of g.arboreum_cottongen_reftransV1_0001990 vs. ExPASy TrEMBL
Match: A0A061GYQ9_THECC (Chromatin remodeling complex subunit, putative isoform 1 OS=Theobroma cacao GN=TCM_042089 PE=4 SV=1) HSP 1 Score: 256.529 bits (654), Expect = 9.504e-73 Identity = 186/310 (60.00%), Postives = 226/310 (72.90%), Query Frame = -1 Query: 3 GKKSVNLGAATAEASGVRRSPRETISKKNMTPPSSSGTRKSERLEKQTANLNSTTSSGXXXXXXXXXXXXXKNASPLRRSDRVKMPXXXXXXXXXXXXXSLDLLNTXXXXXXXXXXXKQLTG-TVEDNKIEREVEQANEKQKKRMDARAYKALFRKQPKKADETDRNEDLNGTNSGRREEDVLEEFIERSHERTEVTSTSQPAEEALKGKNEHNLFLTSEKDSCKDISSNGGDLQIPKNGLITEEMNDNAEKAAQDNLQSPHFAKSIMPGGVLGCDISVEM---VMPSENKCHDIDIDSVASSKISSNNI 920 GKKSVN GA+TAE SG RRS RET+SKK+M P SSSGTRKSERLEKQT+N N+ T + + E+ +K+K+ PLRRS+R KMPS S SSGSK+SDKSLD L+ KRKKEKK+KSVKQLT TVE NKIE + Q +E QKKRMDARAY+A+FRKQ K A+ TD +DLN T+S RR+ED L+ ER+ E T TSQ EEA + NEH LF TS+KDSCKD+SSNG L++ K+GL+ EMND+AEKA QD P S++ +L C+IS+EM V+ SE K HDIDIDSVAS SS +I Sbjct: 26 GKKSVNSGASTAEVSGFRRSLRETLSKKSMNPLSSSGTRKSERLEKQTSNSNTMT---RPSKRKSERIEKQKHRCPLRRSERGKMPSLSGSSGSKKSDKSLDSLDAKRKKEKKEKSVKQLTMETVEVNKIENKDGQVDEAQKKRMDARAYRAMFRKQLKSANGTDHGDDLNRTDSERRDEDPLKVHAERTCEITMARGTSQSVEEAPENDNEHTLFPTSQKDSCKDMSSNGDGLRVSKSGLVAIEMNDDAEKAVQD----PELVNSMLHERILDCNISLEMVQEVVFSERKRHDIDIDSVASPITSSKDI 328
BLAST of g.arboreum_cottongen_reftransV1_0001990 vs. ExPASy TrEMBL
Match: A0A0D2S4G5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G230500 PE=4 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 5.504e-29 Identity = 112/232 (48.28%), Postives = 142/232 (61.21%), Query Frame = -1 Query: 141 MTPPSSSGTRKSERLEKQTANLNSTTSSGXXXXXXXXXXXXXKNASPLRRSDRVKMPXXXXXXXXXXXXXSLDLLNTXXXXXXXXXXXKQLTG-TVEDNKIEREVEQANEKQKKRMDARAYKALFRKQPKKADETDRNEDLNGTNSGRREEDVLEEFIERSHERTEVTSTSQPAEEALKGKNEHNLFLTSEKDSCKDISSNGGDLQIPKNGLITEEMNDNAEKAAQDNLQSP 833 MT P RKSE++EKQ KN SPLRRS+R KM SSS S GSK+SD S L+ KRKKEK++ SVK LT +VE + E+E Q E QKKRMDARAY+AL RK P++ D D DLN T+ RE ++LE+ ER+HER+ V ST+Q +EA + +EH F T +KDSCKD+ S QI KN L+ E+ND+A KA Q+NL+SP Sbjct: 1 MTSPVK---RKSEQIEKQ------------------------KNLSPLRRSERDKMLSSSGSLGSKKSDTSPGFLDRKRKKEKEENSVKPLTTRSVEVKQNEQEDGQG-EVQKKRMDARAYRALLRKTPQQVDRADHCGDLNRTDCRNREVELLEKLTERTHERSVVASTNQSVKEAFEKNDEHKSFSTCQKDSCKDMCSTKDVPQIVKNRLVDGEVNDDAGKAMQENLRSP 204
BLAST of g.arboreum_cottongen_reftransV1_0001990 vs. ExPASy TrEMBL
Match: A0A0D2R2K7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G230500 PE=4 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 5.621e-29 Identity = 112/232 (48.28%), Postives = 142/232 (61.21%), Query Frame = -1 Query: 141 MTPPSSSGTRKSERLEKQTANLNSTTSSGXXXXXXXXXXXXXKNASPLRRSDRVKMPXXXXXXXXXXXXXSLDLLNTXXXXXXXXXXXKQLTG-TVEDNKIEREVEQANEKQKKRMDARAYKALFRKQPKKADETDRNEDLNGTNSGRREEDVLEEFIERSHERTEVTSTSQPAEEALKGKNEHNLFLTSEKDSCKDISSNGGDLQIPKNGLITEEMNDNAEKAAQDNLQSP 833 MT P RKSE++EKQ KN SPLRRS+R KM SSS S GSK+SD S L+ KRKKEK++ SVK LT +VE + E+E Q E QKKRMDARAY+AL RK P++ D D DLN T+ RE ++LE+ ER+HER+ V ST+Q +EA + +EH F T +KDSCKD+ S QI KN L+ E+ND+A KA Q+NL+SP Sbjct: 1 MTSPVK---RKSEQIEKQ------------------------KNLSPLRRSERDKMLSSSGSLGSKKSDTSPGFLDRKRKKEKEENSVKPLTTRSVEVKQNEQEDGQG-EVQKKRMDARAYRALLRKTPQQVDRADHCGDLNRTDCRNREVELLEKLTERTHERSVVASTNQSVKEAFEKNDEHKSFSTCQKDSCKDMCSTKDVPQIVKNRLVDGEVNDDAGKAMQENLRSP 204
BLAST of g.arboreum_cottongen_reftransV1_0001990 vs. ExPASy TrEMBL
Match: A0A0B0MZT4_GOSAR (Coiled-coil domain-containing 41 OS=Gossypium arboreum GN=F383_32105 PE=4 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.102e-26 Identity = 70/140 (50.00%), Postives = 91/140 (65.00%), Query Frame = -1 Query: 141 TGTVEDNKIEREVEQANEKQKKRMDARAYKALFRKQPKKADETDRNEDLNGTNSGRREEDVLEEFIERSHERTEVTSTSQPAEEALKGKNEHNLFLTSEKDSCKDISSNGGDLQIPKNGLITEEMNDNAEKAAQDNLQSP 560 T +VE E+E Q E QKKRMDARAY+AL RK P++ D DLN T+ G RE ++LE+ ER+ ER+ V ST+Q ++KG EH F T +KDSCKD+SS QI KN L+ E+ND+A KA Q+NL+SP Sbjct: 64 TRSVEVKHNEQEDGQG-EAQKKRMDARAYRALLRKTPQQVYRADHCGDLNRTDCGNREVELLEKLTERTSERSVVASTNQ----SVKGAFEHKSFSTCQKDSCKDMSSTKDVPQIVKNRLVDGEVNDDAGKAMQENLRSP 198 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001990 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 11
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BLAST of g.arboreum_cottongen_reftransV1_0001990 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0001990 ID=g.arboreum_cottongen_reftransV1_0001990; Name=g.arboreum_cottongen_reftransV1_0001990; organism=Gossypium arboreum; type=contig; length=926bpback to top |