g.arboreum_cottongen_reftransV1_0001589, g.arboreum_cottongen_reftransV1_0001589 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A0D2NDS3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G163400 PE=4 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 1.108e-86 Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = -1 Query: 1 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 399 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSD+MTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML Sbjct: 137 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDIMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 269
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A0D2PTY1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G163400 PE=4 SV=1) HSP 1 Score: 266.544 bits (680), Expect = 6.141e-85 Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = -1 Query: 1 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 399 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSD+MTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML Sbjct: 137 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDIMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 269
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A0D2RG47_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G163400 PE=4 SV=1) HSP 1 Score: 266.544 bits (680), Expect = 2.903e-84 Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = -1 Query: 1 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 399 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSD+MTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML Sbjct: 109 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDIMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 241
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A0B0N4S6_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_33033 PE=4 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 2.918e-84 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = -1 Query: 1 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 399 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML Sbjct: 137 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 269
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A0D2SI55_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G163400 PE=4 SV=1) HSP 1 Score: 266.544 bits (680), Expect = 7.747e-84 Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = -1 Query: 1 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 399 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSD+MTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML Sbjct: 136 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDIMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 268
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A0D2RMJ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G163400 PE=4 SV=1) HSP 1 Score: 266.159 bits (679), Expect = 8.198e-84 Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = -1 Query: 1 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 399 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSD+MTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML Sbjct: 137 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDIMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 269
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A0D2RMI7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G163400 PE=4 SV=1) HSP 1 Score: 231.876 bits (590), Expect = 3.926e-72 Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = -1 Query: 1 MLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 351 MLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSD+MTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML Sbjct: 1 MLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDIMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 117
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A061EF39_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_010813 PE=4 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 2.913e-69 Identity = 112/132 (84.85%), Postives = 122/132 (92.42%), Query Frame = -1 Query: 4 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVM 399 NI+G++SD+SQ ICL+MLILFT+ ATGCILLSIGQDEFH E LHTL YVVNQSDYTVQILKNVTQYLSLAKTI+VAQVFLPSDVM+DIDKLNIDL AADTLTEKT ENA KI++VFNAVRLALITVAAVM Sbjct: 161 NIKGERSDNSQRICLIMLILFTTATATGCILLSIGQDEFHGEVLHTLKYVVNQSDYTVQILKNVTQYLSLAKTINVAQVFLPSDVMSDIDKLNIDLKAAADTLTEKTSENAGKIRKVFNAVRLALITVAAVM 292
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: B9TCF2_RICCO (Putative uncharacterized protein (Fragment) OS=Ricinus communis GN=RCOM_2081700 PE=4 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 6.222e-65 Identity = 102/133 (76.69%), Postives = 114/133 (85.71%), Query Frame = -1 Query: 1 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 399 NI GK SD S+ ICL+MLI+FTS AA GCILLS+GQDEFH EA+ TL YVVNQSDYT Q L+NVT+YLSLAKTI+VA VFLPS+V+ DIDKLNIDLNTAA TL EKT +NA KI +VFNAVR ALITVAAVML Sbjct: 90 NINGKGSDRSRRICLIMLIMFTSAAAVGCILLSVGQDEFHGEAMRTLKYVVNQSDYTEQTLRNVTEYLSLAKTINVAHVFLPSNVLEDIDKLNIDLNTAAGTLKEKTSDNAGKIIKVFNAVRSALITVAAVML 222
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A0D2SNK6_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_007G205000 PE=4 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 2.109e-64 Identity = 108/159 (67.92%), Postives = 121/159 (76.10%), Query Frame = -1 Query: 4 NIEGKKSDHSQTICLVMLILFTSVAATG---------------------------CILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVM 399 NI+GK+ DHSQTICL++LILFTS AA G CILLS+GQDEFH E LHTL YVVNQSDYTVQIL NVTQYLSLAKTI+VA++FLPS+ +TD DKLNIDLN AADTL EKTDENAVKI+RVFNAV+LALI+VAAVM Sbjct: 138 NIKGKRMDHSQTICLILLILFTSAAACGKQKVKARHRANYLVLIYAHSHDCVCIGCILLSVGQDEFHGEVLHTLKYVVNQSDYTVQILNNVTQYLSLAKTINVAELFLPSNAITDTDKLNIDLNAAADTLREKTDENAVKIRRVFNAVQLALISVAAVM 296 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0001589 ID=g.arboreum_cottongen_reftransV1_0001589; Name=g.arboreum_cottongen_reftransV1_0001589; organism=Gossypium arboreum; type=contig; length=399bpback to top |