g.arboreum_cottongen_reftransV1_0001589, g.arboreum_cottongen_reftransV1_0001589 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001589
Unique Nameg.arboreum_cottongen_reftransV1_0001589
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length399
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr5chromosomeg.arboreum_cottongen_reftransV1_0001589:1..399 .
Chr5:31242990..31243664 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A0D2NDS3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G163400 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.108e-86
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = -1
Query:    1 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 399
            NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSD+MTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML
Sbjct:  137 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDIMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 269          
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A0D2PTY1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G163400 PE=4 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 6.141e-85
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = -1
Query:    1 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 399
            NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSD+MTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML
Sbjct:  137 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDIMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 269          
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A0D2RG47_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G163400 PE=4 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 2.903e-84
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = -1
Query:    1 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 399
            NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSD+MTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML
Sbjct:  109 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDIMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 241          
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A0B0N4S6_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_33033 PE=4 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 2.918e-84
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = -1
Query:    1 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 399
            NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML
Sbjct:  137 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 269          
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A0D2SI55_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G163400 PE=4 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 7.747e-84
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = -1
Query:    1 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 399
            NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSD+MTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML
Sbjct:  136 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDIMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 268          
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A0D2RMJ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G163400 PE=4 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 8.198e-84
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = -1
Query:    1 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 399
            NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSD+MTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML
Sbjct:  137 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDIMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 269          
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A0D2RMI7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G163400 PE=4 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.926e-72
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = -1
Query:    1 MLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 351
            MLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSD+MTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML
Sbjct:    1 MLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDIMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 117          
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A061EF39_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_010813 PE=4 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 2.913e-69
Identity = 112/132 (84.85%), Postives = 122/132 (92.42%), Query Frame = -1
Query:    4 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVM 399
            NI+G++SD+SQ ICL+MLILFT+  ATGCILLSIGQDEFH E LHTL YVVNQSDYTVQILKNVTQYLSLAKTI+VAQVFLPSDVM+DIDKLNIDL  AADTLTEKT ENA KI++VFNAVRLALITVAAVM
Sbjct:  161 NIKGERSDNSQRICLIMLILFTTATATGCILLSIGQDEFHGEVLHTLKYVVNQSDYTVQILKNVTQYLSLAKTINVAQVFLPSDVMSDIDKLNIDLKAAADTLTEKTSENAGKIRKVFNAVRLALITVAAVM 292          
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: B9TCF2_RICCO (Putative uncharacterized protein (Fragment) OS=Ricinus communis GN=RCOM_2081700 PE=4 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 6.222e-65
Identity = 102/133 (76.69%), Postives = 114/133 (85.71%), Query Frame = -1
Query:    1 NIEGKKSDHSQTICLVMLILFTSVAATGCILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVML 399
            NI GK SD S+ ICL+MLI+FTS AA GCILLS+GQDEFH EA+ TL YVVNQSDYT Q L+NVT+YLSLAKTI+VA VFLPS+V+ DIDKLNIDLNTAA TL EKT +NA KI +VFNAVR ALITVAAVML
Sbjct:   90 NINGKGSDRSRRICLIMLIMFTSAAAVGCILLSVGQDEFHGEAMRTLKYVVNQSDYTEQTLRNVTEYLSLAKTINVAHVFLPSNVLEDIDKLNIDLNTAAGTLKEKTSDNAGKIIKVFNAVRSALITVAAVML 222          
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Match: A0A0D2SNK6_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_007G205000 PE=4 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 2.109e-64
Identity = 108/159 (67.92%), Postives = 121/159 (76.10%), Query Frame = -1
Query:    4 NIEGKKSDHSQTICLVMLILFTSVAATG---------------------------CILLSIGQDEFHDEALHTLNYVVNQSDYTVQILKNVTQYLSLAKTISVAQVFLPSDVMTDIDKLNIDLNTAADTLTEKTDENAVKIKRVFNAVRLALITVAAVM 399
            NI+GK+ DHSQTICL++LILFTS AA G                           CILLS+GQDEFH E LHTL YVVNQSDYTVQIL NVTQYLSLAKTI+VA++FLPS+ +TD DKLNIDLN AADTL EKTDENAVKI+RVFNAV+LALI+VAAVM
Sbjct:  138 NIKGKRMDHSQTICLILLILFTSAAACGKQKVKARHRANYLVLIYAHSHDCVCIGCILLSVGQDEFHGEVLHTLKYVVNQSDYTVQILNNVTQYLSLAKTINVAELFLPSNAITDTDKLNIDLNAAADTLREKTDENAVKIRRVFNAVQLALISVAAVM 296          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2NDS3_GOSRA1.108e-8699.25Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2PTY1_GOSRA6.141e-8599.25Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RG47_GOSRA2.903e-8499.25Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0N4S6_GOSAR2.918e-84100.00Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2SI55_GOSRA7.747e-8499.25Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RMJ2_GOSRA8.198e-8499.25Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RMI7_GOSRA3.926e-7299.15Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061EF39_THECC2.913e-6984.85Uncharacterized protein OS=Theobroma cacao GN=TCM_... [more]
B9TCF2_RICCO6.222e-6576.69Putative uncharacterized protein (Fragment) OS=Ric... [more]
A0A0D2SNK6_GOSRA2.109e-6467.92Uncharacterized protein (Fragment) OS=Gossypium ra... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0001589 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31414FAMILY NOT NAMEDcoord: 1..117
NoneNo IPR availablePANTHERPTHR31414:SF8SUBFAMILY NOT NAMEDcoord: 1..117
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..117
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.518

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001589 ID=g.arboreum_cottongen_reftransV1_0001589; Name=g.arboreum_cottongen_reftransV1_0001589; organism=Gossypium arboreum; type=contig; length=399bp
TAGCATCACAGCTGCCACGGTGATCAGTGCTAATCGTACAGCATTGAAGA
CTCTTTTTATTTTGACAGCATTTTCATCAGTCTTCTCAGTAAGTGTATCT
GCTGCAGTGTTTAGATCTATGTTCAACTTGTCAATGTCGGTCATGACATC
GGAAGGAAGGAAAACCTGAGCCACACTGATGGTTTTCGCTAGAGATAGGT
ACTGTGTAACATTCTTTAGGATCTGTACAGTATAGTCTGACTGATTTACA
ACATAATTCAAAGTATGCAACGCTTCATCATGAAATTCATCTTGCCCAAT
AGAAAGAAGAATACATCCAGTCGCAGCAACACTTGTGAACAATATGAGCA
TTACAAGACAAATAGTTTGTGAGTGATCTGATTTTTTTCCTTCGATGTT
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