g.arboreum_cottongen_reftransV1_0003919, g.arboreum_cottongen_reftransV1_0003919 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0003919
Unique Name	g.arboreum_cottongen_reftransV1_0003919
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	529

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr8	chromosome	g.arboreum_cottongen_reftransV1_0003919:1..529 . Chr8:42480121..42482571 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: A0A0D2UA24_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G110300 PE=4 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 4.667e-93
Identity = 172/175 (98.29%), Postives = 172/175 (98.29%), Query Frame = 3

Query:    3 TKLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            TKLQRPILIGSIVIICVAIFV MIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGV DPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPT HGCLKVVENNYCASKRGGVRCLSILNAVFALIFGLLALFLGSSLLTLGSSCSLPLFWCYEIASW
Sbjct:   29 TKLQRPILIGSIVIICVAIFVCMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVGDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTRHGCLKVVENNYCASKRGGVRCLSILNAVFALIFGLLALFLGSSLLTLGSSCSLPLFWCYEIASW 203

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: A0A061GKN9_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_037155 PE=4 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 4.516e-78
Identity = 154/175 (88.00%), Postives = 160/175 (91.43%), Query Frame = 3

Query:    3 TKLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            TKLQRPILIGSI IIC+AIFV  +ISLKIVFPGDDLKRPFCDDRRLQPLP+N KGGG  D DL PGAF LTDQETVDYYWMVVF+PSMIIFLAS  YLVAGI VAY+APT HGCLKVVENNYCASKRGGVRCLSILN VFA+IFGLLALFLGSSLLTLGSSCSLPLFWCYEI SW
Sbjct:   29 TKLQRPILIGSIGIICLAIFVCTVISLKIVFPGDDLKRPFCDDRRLQPLPVNVKGGGGGDSDLLPGAFSLTDQETVDYYWMVVFVPSMIIFLASVLYLVAGITVAYAAPTRHGCLKVVENNYCASKRGGVRCLSILNVVFAIIFGLLALFLGSSLLTLGSSCSLPLFWCYEIGSW 203

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: A0A0D2RUE0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G051200 PE=4 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 4.819e-78
Identity = 149/175 (85.14%), Postives = 158/175 (90.29%), Query Frame = 3

Query:    3 TKLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            T+LQ+PILIGSI  IC+A+FV  IISLKIVFP D LKRPFCDD RLQPLPLN KGGG  D D FPGAFYLTDQET+DYYWMVVFIPS +IFLAS AYLVAGI VAYSAP  HGCLKVVENNYCASKRGGVRCLSILNAVFA+IFGLLALFLGSSLLTLGS+CSLPLFWCYEIA+W
Sbjct:   29 TRLQKPILIGSIGTICIAVFVCTIISLKIVFPEDALKRPFCDDWRLQPLPLNAKGGGTGDSDPFPGAFYLTDQETIDYYWMVVFIPSAVIFLASVAYLVAGITVAYSAPNRHGCLKVVENNYCASKRGGVRCLSILNAVFAVIFGLLALFLGSSLLTLGSNCSLPLFWCYEIAAW 203

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: A0A061GJY3_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_037155 PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.497e-71
Identity = 149/175 (85.14%), Postives = 154/175 (88.00%), Query Frame = 3

Query:    3 TKLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            TKLQRPILIGSI IIC+AIFV  +ISLKIVFPGDDLKRPFCDDRRLQPLP+N KGGG  D DL PGAF LTDQETVDYYWMVVF+PSMIIFLAS  YLVA       APT HGCLKVVENNYCASKRGGVRCLSILN VFA+IFGLLALFLGSSLLTLGSSCSLPLFWCYEI SW
Sbjct:   29 TKLQRPILIGSIGIICLAIFVCTVISLKIVFPGDDLKRPFCDDRRLQPLPVNVKGGGGGDSDLLPGAFSLTDQETVDYYWMVVFVPSMIIFLASVLYLVA-------APTRHGCLKVVENNYCASKRGGVRCLSILNVVFAIIFGLLALFLGSSLLTLGSSCSLPLFWCYEIGSW 196

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: A0A067KQZ8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07775 PE=4 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 3.333e-70
Identity = 141/174 (81.03%), Postives = 149/174 (85.63%), Query Frame = 3

Query:    6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            KLQRPILI  +V IC+ I +  ++SLKIVFPG+  KRPFC DRRLQPL  N KGG   D DLFPGAFYLTDQETVDYYWMVV IPS IIFLAS AYL AGI VAYSAP  HGCLKVVENNYCASKRGGVRCLSILN VFA+IFGLLALFLGSSLLTLGSSCSLPLFWCYEIA+W
Sbjct:   30 KLQRPILISIVVFICLVILISTVVSLKIVFPGNGGKRPFCSDRRLQPLQFNTKGG---DSDLFPGAFYLTDQETVDYYWMVVCIPSTIIFLASVAYLGAGIAVAYSAPARHGCLKVVENNYCASKRGGVRCLSILNIVFAIIFGLLALFLGSSLLTLGSSCSLPLFWCYEIATW 200

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: A0A0B0PTG8_GOSAR (Protein dedD OS=Gossypium arboreum GN=F383_16381 PE=4 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 4.678e-69
Identity = 148/175 (84.57%), Postives = 148/175 (84.57%), Query Frame = 3

Query:    3 TKLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            TKLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVA                           GGVRCLSILNAVFALIFGLLALFLGSSLLTLGSSCSLPLFWCYEIASW
Sbjct:   29 TKLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVA---------------------------GGVRCLSILNAVFALIFGLLALFLGSSLLTLGSSCSLPLFWCYEIASW 176

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: B9RS44_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0802840 PE=4 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.732e-68
Identity = 139/174 (79.89%), Postives = 150/174 (86.21%), Query Frame = 3

Query:    6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            KLQRP+L+  +  IC  I V  I+SLKIVFPGD  KRPFC DRRLQPL +N KGGG  D DLFPGAFYLTDQETVDYYWMVVFIPS++IFL SAAYL AG+ VAYSAP  HGCL VVENNYCASKRGGVRCLSILN VFA+IFGLLALFLGSSLLTLGSSCSLPLFWCYEI++W
Sbjct:   30 KLQRPVLVSILAAICFLILVCTIVSLKIVFPGDSGKRPFCSDRRLQPLQINMKGGG--DSDLFPGAFYLTDQETVDYYWMVVFIPSLVIFLISAAYLCAGLTVAYSAPARHGCLTVVENNYCASKRGGVRCLSILNIVFAIIFGLLALFLGSSLLTLGSSCSLPLFWCYEISTW 201

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: A0A0D2TDX6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G051200 PE=4 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.110e-67
Identity = 131/175 (74.86%), Postives = 140/175 (80.00%), Query Frame = 3

Query:    3 TKLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            T+LQ+PILIGSI  IC+A+FV  IISLKIVFP D LKRPFCDD RLQPLPLN KGGG  D D FPGAFYLTDQET+DYYWMVVFIPS +IFLAS AYLVAGI VAYSAP  HGCLKVVENNYCASKR       +L           ALFLGSSLLTLGS+CSLPLFWCYEIA+W
Sbjct:   29 TRLQKPILIGSIGTICIAVFVCTIISLKIVFPEDALKRPFCDDWRLQPLPLNAKGGGTGDSDPFPGAFYLTDQETIDYYWMVVFIPSAVIFLASVAYLVAGITVAYSAPNRHGCLKVVENNYCASKRVFAVIFGLL-----------ALFLGSSLLTLGSNCSLPLFWCYEIAAW 192

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: B9IKM0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s00660g PE=4 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.290e-67
Identity = 138/175 (78.86%), Postives = 150/175 (85.71%), Query Frame = 3

Query:    3 TKLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            TKLQRP+LI ++ IIC+ IFV   +S KIVFPGD  KRPFC   RLQPLP+  K GG  + DLFPGAFYLTDQETVDYYWMVVF+PS I+FLAS AYLVAG+ VAYSAP  HGCLKVVENNYCASKRGGVRCLSILN VFA+IFGLLALFLGSSLLTLGSSCSLPLFWCYE A+W
Sbjct:   29 TKLQRPLLISTVGIICLVIFVSTTVSFKIVFPGDSGKRPFCSGNRLQPLPI--KHGG--NSDLFPGAFYLTDQETVDYYWMVVFVPSGIVFLASLAYLVAGMNVAYSAPARHGCLKVVENNYCASKRGGVRCLSILNGVFAIIFGLLALFLGSSLLTLGSSCSLPLFWCYEFATW 199

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Match: B9H916_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s25790g PE=4 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.418e-66
Identity = 137/174 (78.74%), Postives = 151/174 (86.78%), Query Frame = 3

Query:    6 KLQRPILIGSIVIICVAIFVGMIISLKIVFPGDDLKRPFCDDRRLQPLPLNPKGGGVDDPDLFPGAFYLTDQETVDYYWMVVFIPSMIIFLASAAYLVAGIVVAYSAPTTHGCLKVVENNYCASKRGGVRCLSILNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWCYEIASW 527
            KLQRP+ I +   IC+ IFV   +SLKIVFPGD+ KRPFC+  RLQPLP+  K GG  D DLFPGAFYLTDQETVDYYWMVVF+PSMI+FLAS AYLVAG+ VA SAP  HGCLKVVENNYC+SKRGGVRCLSILN+VFA+IFGLLALFLGSSLLTLGSSCSLPLFWCYEIA+W
Sbjct:   30 KLQRPLWISTGGTICLVIFVSTTVSLKIVFPGDNGKRPFCNGNRLQPLPI--KNGG--DSDLFPGAFYLTDQETVDYYWMVVFVPSMIVFLASLAYLVAGMNVACSAPARHGCLKVVENNYCSSKRGGVRCLSILNSVFAIIFGLLALFLGSSLLTLGSSCSLPLFWCYEIATW 199

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2UA24_GOSRA	4.667e-93	98.29	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061GKN9_THECC	4.516e-78	88.00	Uncharacterized protein isoform 1 OS=Theobroma cac...	[more]
A0A0D2RUE0_GOSRA	4.819e-78	85.14	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061GJY3_THECC	1.497e-71	85.14	Uncharacterized protein isoform 2 OS=Theobroma cac...	[more]
A0A067KQZ8_JATCU	3.333e-70	81.03	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
A0A0B0PTG8_GOSAR	4.678e-69	84.57	Protein dedD OS=Gossypium arboreum GN=F383_16381 P...	[more]
B9RS44_RICCO	2.732e-68	79.89	Putative uncharacterized protein OS=Ricinus commun...	[more]
A0A0D2TDX6_GOSRA	1.110e-67	74.86	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
B9IKM0_POPTR	1.290e-67	78.86	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
B9H916_POPTR	1.418e-66	78.74	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0003919 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36060	FAMILY NOT NAMED	coord: 1..153
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..55
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 56..84
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 113..136
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 85..112
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 137..153
None	No IPR available	TMHMM	TMhelix		coord: 114..136
None	No IPR available	TMHMM	TMhelix		coord: 56..78

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0003919 ID=g.arboreum_cottongen_reftransV1_0003919; Name=g.arboreum_cottongen_reftransV1_0003919; organism=Gossypium arboreum; type=contig; length=529bp
GGACGAAGCTACAAAGGCCGATCTTAATCGGTTCCATAGTGATCATTTGT
GTTGCGATCTTCGTTGGCATGATTATAAGCTTGAAGATTGTGTTTCCGGG
AGATGATTTGAAGCGACCGTTTTGCGATGACCGGAGACTGCAGCCTTTGC
CGTTGAATCCGAAAGGTGGAGGTGTCGACGATCCAGATCTGTTTCCCGGA
GCATTCTATTTGACTGATCAAGAAACCGTAGATTACTATTGGATGGTTGT
GTTCATTCCATCTATGATCATTTTTTTGGCTTCAGCTGCGTATCTGGTGG
CAGGAATTGTTGTTGCTTATTCTGCTCCAACTACGCATGGATGTTTAAAG
GTGGTTGAAAATAATTACTGTGCTTCAAAAAGAGGTGGAGTTCGCTGCTT
GTCTATTTTGAATGCGGTTTTTGCTCTCATTTTTGGTCTTCTTGCTTTGT
TCTTGGGCTCAAGCCTCCTCACATTAGGAAGTAGCTGCTCTTTGCCCCTG
TTTTGGTGCTACGAGATTGCTTCATGGGG

Search form

g.arboreum_cottongen_reftransV1_0003919, g.arboreum_cottongen_reftransV1_0003919 (contig) Gossypium arboreum

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