g.arboreum_cottongen_reftransV1_0018368, g.arboreum_cottongen_reftransV1_0018368 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: A0A0D2NDT4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G162800 PE=4 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 2.611e-74 Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = -2 Query: 33 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLVVRDQK 383 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMK KGVLPGMHMYSDLITSLCHK+KLGEACKYFQEMLDAGIRPPAKMFSNLKQALL EGKKDEALNL RKINKLRGTPLVVRDQK Sbjct: 474 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKAKGVLPGMHMYSDLITSLCHKNKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLGEGKKDEALNLARKINKLRGTPLVVRDQK 590 HSP 2 Score: 60.077 bits (144), Expect = 5.914e-8 Identity = 31/109 (28.44%), Postives = 54/109 (49.54%), Query Frame = -2 Query: 54 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTP 380 G EP V TY I++ +C + D A +++ +M+ K P H+Y LI L + +L EA ++F+ G P A +++L A + D+A + ++ K P Sbjct: 334 GFEPDVVTYGILISAYCKAKKYDAAIELFHEMEAKNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEMRKHSAGP 442
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: D2STE8_GOSHI (Pentatricopeptide repeat protein OS=Gossypium hirsutum GN=PPR3 PE=2 SV=1) HSP 1 Score: 241.121 bits (614), Expect = 5.101e-74 Identity = 112/117 (95.73%), Postives = 113/117 (96.58%), Query Frame = -2 Query: 33 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLVVRDQK 383 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMK KGVLPGMHMYSDLITSLCHK+KLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGK DEALNL RKINKLRGTPLVV DQK Sbjct: 431 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKAKGVLPGMHMYSDLITSLCHKNKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKNDEALNLARKINKLRGTPLVVGDQK 547 HSP 2 Score: 60.8474 bits (146), Expect = 3.176e-8 Identity = 31/109 (28.44%), Postives = 54/109 (49.54%), Query Frame = -2 Query: 54 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTP 380 G EP V TY I++ +C + D A +++ +M+ K P H+Y LI L + +L EA ++F+ G P A +++L A + D+A + ++ K P Sbjct: 291 GFEPDVVTYGILISAYCKAKKYDAAIELFHEMEAKNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEMRKHSAGP 399
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: A0A061E7F9_THECC (Pentatricopeptide repeat-containing protein, putative isoform 1 OS=Theobroma cacao GN=TCM_010824 PE=4 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 1.118e-57 Identity = 93/116 (80.17%), Postives = 100/116 (86.21%), Query Frame = -2 Query: 36 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLVVRDQ 383 PGC PTVSTYEIIVRMFCNE++VD+A VW QMK +GVLPGMHM+SDLI SLCH KL +ACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKD ALNL RKI+KLR PLV Q Sbjct: 430 PGCVPTVSTYEIIVRMFCNEEQVDMAMLVWAQMKAEGVLPGMHMFSDLINSLCHNSKLDDACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDTALNLARKIDKLRKMPLVGEGQ 545
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: A0A059BEG7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02199 PE=4 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 1.274e-53 Identity = 83/112 (74.11%), Postives = 97/112 (86.61%), Query Frame = -2 Query: 48 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 383 PGCEPT+STYEIIVRMFCNEDR D+A +VW QMK KGVLPGMHM+S +I+SLCH++KL +ACKYFQEM+D GIRPPA FS LKQ LLDEG+KD+ LN +RKI+KLR PLV Sbjct: 404 PGCEPTLSTYEIIVRMFCNEDRTDMALRVWKQMKEKGVLPGMHMFSTVISSLCHENKLDDACKYFQEMMDVGIRPPANTFSKLKQCLLDEGRKDDVLNFSRKIDKLRKAPLV 515
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: B9HW85_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12490g PE=4 SV=2) HSP 1 Score: 183.341 bits (464), Expect = 1.698e-52 Identity = 83/111 (74.77%), Postives = 94/111 (84.68%), Query Frame = -2 Query: 48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380 GCEP+VSTYEIIVRMFCNEDRVD+A +VWDQMK KG+LP MHM+S LI SLCH+ KL EAC YFQEMLD GIRPPA++FSNLKQ LLDEGKKD + RK++KLR PLV Sbjct: 377 GCEPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPVMHMFSTLINSLCHESKLDEACMYFQEMLDVGIRPPAQLFSNLKQNLLDEGKKDTVVVFERKLDKLRKAPLV 487
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: A0A0A0KUY5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G571490 PE=4 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 2.221e-52 Identity = 81/112 (72.32%), Postives = 96/112 (85.71%), Query Frame = -2 Query: 48 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 383 PGCEPT+STY+I++RMFCNE+RVD+A Q+WD+MK KGVLPGMH++S LI SLCH+ KL +AC YFQEMLD GIRPPA MFSNLKQALLD+G+KD AL + KI KLR PLV Sbjct: 430 PGCEPTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDGRKDTALLMAEKIKKLRKAPLV 541
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: F6HFJ5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04690 PE=4 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 4.277e-51 Identity = 80/112 (71.43%), Postives = 97/112 (86.61%), Query Frame = -2 Query: 48 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 383 PGCEP+VSTYEI+VRMFCNE+RVD+A +VWD+MK KGVLPGMHM+S LI SLC+++KL EACKYF EMLD GIRPPA MFSNLKQ LLDEGK+D L L +K++K+R T ++ Sbjct: 419 PGCEPSVSTYEIVVRMFCNEERVDMALRVWDEMKAKGVLPGMHMFSTLINSLCYENKLDEACKYFHEMLDMGIRPPAAMFSNLKQTLLDEGKQDMVLILAQKLDKIRTTQVI 530
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: A0A067KPG2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04675 PE=4 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 2.284e-50 Identity = 81/111 (72.97%), Postives = 92/111 (82.88%), Query Frame = -2 Query: 48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380 GCEPTVSTYEIIVRMFCN +RVD A Q+WDQMK KG+LPGMHM+ +I SLCH++KL ACKYFQEMLD GIRPPA +FSNLKQALLD GKK + L +KI+KLR TP V Sbjct: 378 GCEPTVSTYEIIVRMFCNAERVDKAIQIWDQMKAKGILPGMHMFCTIINSLCHENKLDMACKYFQEMLDVGIRPPATLFSNLKQALLDNGKKHIVVLLAQKIDKLRKTPFV 488
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: W9RD71_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025886 PE=4 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 2.553e-50 Identity = 80/112 (71.43%), Postives = 95/112 (84.82%), Query Frame = -2 Query: 48 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 383 PGCEPTVSTYEI+VRMFCN +R+D+A Q+WDQMK KGVLPGMHM+S LI SLC +DKL +ACKYFQEM+D GIRPPA+++SNLKQALLDEG++D L +I KLR T LV Sbjct: 439 PGCEPTVSTYEIMVRMFCNVERLDMAIQIWDQMKAKGVLPGMHMFSTLINSLCMEDKLDDACKYFQEMMDMGIRPPAQLYSNLKQALLDEGREDMVQTLYERIEKLRKTSLV 550
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Match: A0A067FBH5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037620mg PE=4 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 6.632e-50 Identity = 80/116 (68.97%), Postives = 96/116 (82.76%), Query Frame = -2 Query: 36 PGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLVVRDQ 383 PG EPTVSTYEI+VRMFC +VD+A ++WD+MK +GVLP MHMYS LI SLCH+DKL +ACKYFQEMLD GIRPP ++FSNLKQAL DEG ++ A+ L +KI+KLR TPLV R Q Sbjct: 215 PGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTPLVDRGQ 330
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP112_ARATH (Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 1.266e-49 Identity = 75/111 (67.57%), Postives = 94/111 (84.68%), Query Frame = -2 Query: 48 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLV 380 CEPTVSTYEI+VRMFCN++R+D+A ++WD+MK KGVLPGMHM+S LIT+LCH++KL EAC+YF EMLD GIRPP MFS LKQ LLDEG+KD+ +L K+++LR T LV Sbjct: 399 SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVKMDRLRKTQLV 509 HSP 2 Score: 53.1434 bits (126), Expect = 1.188e-7 Identity = 32/95 (33.68%), Postives = 46/95 (48.42%), Query Frame = -2 Query: 96 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEA 380 G P TY+II+ R A +V+ M + P + Y ++ C+K++L A K + EM G+ P MFS+L AL E K DEA Sbjct: 367 GVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCE---PTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEA 458
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP129_ARATH (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 7.036e-22 Identity = 43/109 (39.45%), Postives = 63/109 (57.80%), Query Frame = -2 Query: 51 CEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPL 377 CEP TY ++++MFC + ++ A +VW M+ KGV P MH +S LI LC + +AC +EM++ GIRP F L+Q L+ E ++D L K+N L PL Sbjct: 407 CEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLIKEEREDVLKFLNEKMNVLVNEPL 515 HSP 2 Score: 59.3066 bits (142), Expect = 1.199e-9 Identity = 27/104 (25.96%), Postives = 60/104 (57.69%), Query Frame = -2 Query: 66 CEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKL 377 C+PT Y ++V + E+R++ A + +M+ G+ + +++ LI + C +++ + +EM G+ P +K + + + L++ G+KDEA ++ RK+ K+ Sbjct: 303 CKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKV 406
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP247_ARATH (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-15 Identity = 36/108 (33.33%), Postives = 58/108 (53.70%), Query Frame = -2 Query: 57 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGT 380 GCEP + TY I++ +C RVD +++ ++ KG++P Y+ L+ C KL A + FQEM+ G+ P + L L D G+ ++AL + K+ K R T Sbjct: 380 GCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT 487 HSP 2 Score: 54.299 bits (129), Expect = 5.092e-8 Identity = 29/93 (31.18%), Postives = 47/93 (50.54%), Query Frame = -2 Query: 96 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEA 374 + +V Y I++ C + D A ++++M++KG+ + YS LI LC+ K + K +EM+ I P FS L + EGK EA Sbjct: 242 KASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEA 334 HSP 3 Score: 54.299 bits (129), Expect = 5.677e-8 Identity = 32/109 (29.36%), Postives = 52/109 (47.71%), Query Frame = -2 Query: 54 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTP 380 G P TY ++ FC E+ + A Q++D M KG P + YS LI S C ++ + + F+E+ G+ P ++ L GK + A L +++ RG P Sbjct: 345 GIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVS-RGVP 452 HSP 4 Score: 52.373 bits (124), Expect = 2.326e-7 Identity = 28/109 (25.69%), Postives = 58/109 (53.21%), Query Frame = -2 Query: 54 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTP 380 G P+V TY I++ C+ ++ A +++++M+ + G+ +Y+ +I +C+ K+ +A F + D G++P ++ + L +G EA L RK+ + TP Sbjct: 450 GVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTP 558 HSP 5 Score: 50.447 bits (119), Expect = 9.455e-7 Identity = 32/102 (31.37%), Postives = 46/102 (45.10%), Query Frame = -2 Query: 75 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKI 380 G EP T+ +V FC E RV A + D+M P + S LI LC K ++ EA M++ G +P + + L G AL+L RK+ Sbjct: 135 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKM 236
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP150_ARATH (Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.428e-14 Identity = 32/103 (31.07%), Postives = 55/103 (53.40%), Query Frame = -2 Query: 69 CEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINK 377 C+P+ TY +++ F N +++ K++WD +K P + Y+ L+ LC K+K EAC YF EM++ G P F L + L+ K L +K+++ Sbjct: 388 CKPSTQTYNVLLGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVEMIERGFLPQKLTFETLYKGLIQSNKMRTWRRLKKKLDE 490
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PPR39_ARATH (Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 2.022e-13 Identity = 33/104 (31.73%), Postives = 57/104 (54.81%), Query Frame = -2 Query: 69 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINK 380 GC+P + T+ I++ +C +R+D +++ +M ++GV+ Y+ L+ C KL A K FQEM+ +RP + L L D G+ ++AL + KI K Sbjct: 398 GCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEK 501 HSP 2 Score: 53.5286 bits (127), Expect = 1.041e-7 Identity = 31/112 (27.68%), Postives = 54/112 (48.21%), Query Frame = -2 Query: 45 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLVV 380 G P TY ++ FC E+R++ A Q+ D M KG P + ++ LI C +++ + + F+EM G+ ++ L Q GK + A L +++ R P +V Sbjct: 363 GIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIV 474
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PPR54_ARATH (Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.263e-12 Identity = 34/107 (31.78%), Postives = 60/107 (56.07%), Query Frame = -2 Query: 54 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTP 374 EP V Y +VR +C + A++V+ +MK+ G+ P ++ YS +I +LC ++ A F +MLD+G P A F+NL + + G+ ++ L + ++ KL P Sbjct: 252 EPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEP 358
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PPR36_ARATH (Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.756e-12 Identity = 32/104 (30.77%), Postives = 56/104 (53.85%), Query Frame = -2 Query: 69 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINK 380 GC+P + T+ I++ +C +R+D +++ +M ++GV+ Y+ LI C KL A + FQEM+ + P + L L D G+ ++AL + KI K Sbjct: 398 GCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEK 501 HSP 2 Score: 55.0694 bits (131), Expect = 3.309e-8 Identity = 31/102 (30.39%), Postives = 54/102 (52.94%), Query Frame = -2 Query: 69 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINK 374 E + Y II+ CN +VD A ++ + +KGV PG+ Y+ +I LC K L EA F++M + G P ++ L +A L +G +++ L ++ + Sbjct: 505 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKR 606
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP412_ARATH (Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 4.618e-12 Identity = 35/112 (31.25%), Postives = 61/112 (54.46%), Query Frame = -2 Query: 45 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLVV 380 G EP + T+ ++ FC +R++ A + +QM G+ P + MY+ +I SLC + A F +M + GIRP M+++L L + G+ +A +L R + K + P V+ Sbjct: 137 GFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVI 248 HSP 2 Score: 56.225 bits (134), Expect = 1.212e-8 Identity = 31/109 (28.44%), Postives = 53/109 (48.62%), Query Frame = -2 Query: 54 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTP 380 G +P V Y I+ C V+ A ++DQM+ G+ P + MY+ L+ LC+ + +A + M I+P F+ L A + EGK +A L ++ ++ P Sbjct: 172 GIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAP 280
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PPR99_ARATH (Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 1.216e-11 Identity = 34/112 (30.36%), Postives = 61/112 (54.46%), Query Frame = -2 Query: 45 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTPLVV 380 GC+P + TY I+V C +DLA + +M+ + PG+ +Y+ +I +LC+ + +A F EM + GIRP +++L + L + G+ +A L + + + P VV Sbjct: 216 GCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVV 327 HSP 2 Score: 58.9214 bits (141), Expect = 1.537e-9 Identity = 31/93 (33.33%), Postives = 47/93 (50.54%), Query Frame = -2 Query: 96 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEA 374 EP V Y I+ CN V+ A ++ +M KG+ P + Y+ LI LC+ + +A + +M++ I P FS L A + EGK EA Sbjct: 253 EPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 345 HSP 3 Score: 53.9138 bits (128), Expect = 8.375e-8 Identity = 29/104 (27.88%), Postives = 53/104 (50.96%), Query Frame = -2 Query: 63 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLR 374 EP + TY I++ C +V+ ++ + +KGV P + Y+ +++ C K EA F+EM + G P + ++ L +A L +G K + L R++ R Sbjct: 498 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCR 601 HSP 4 Score: 53.1434 bits (126), Expect = 1.160e-7 Identity = 25/102 (24.51%), Postives = 48/102 (47.06%), Query Frame = -2 Query: 75 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKI 380 G + TY I++ FC ++ LA V +M G P + + L+ CH +++ +A +M++ G +P + F+ L L + EA+ L ++ Sbjct: 111 GISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRM 212 HSP 5 Score: 53.1434 bits (126), Expect = 1.247e-7 Identity = 26/102 (25.49%), Postives = 51/102 (50.00%), Query Frame = -2 Query: 69 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINK 374 P V T+ ++ F E ++ A++++D+M + + P + YS LI C D+L EA F+ M+ P ++ L + + DE + L R++++ Sbjct: 323 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQ 424 HSP 6 Score: 52.373 bits (124), Expect = 2.085e-7 Identity = 28/108 (25.93%), Postives = 51/108 (47.22%), Query Frame = -2 Query: 54 CEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKINKLRGTP 377 C P V TY +++ FC RVD +++ +M +G++ Y+ LI + A F++M+ G+ P +S L L + GK + AL + + + + P Sbjct: 392 CFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEP 499 HSP 7 Score: 51.2174 bits (121), Expect = 6.246e-7 Identity = 25/93 (26.88%), Postives = 43/93 (46.24%), Query Frame = -2 Query: 96 EPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEA 374 +P + TY ++ FC DR+D AK +++ M K P + Y+ LI C ++ E + F+EM G+ ++ L + D A Sbjct: 358 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNA 450
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Match: PP418_ARATH (Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.356e-11 Identity = 34/102 (33.33%), Postives = 52/102 (50.98%), Query Frame = -2 Query: 72 CEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNLTRKIN 377 C PTV TY ++ C VD A + ++MK KG+ P + YS L+ LC + +A + F+ M+ G RP ++ L L E K EA+ L ++N Sbjct: 223 CAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMN 324 HSP 2 Score: 64.6994 bits (156), Expect = 1.435e-11 Identity = 32/98 (32.65%), Postives = 51/98 (52.04%), Query Frame = -2 Query: 87 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNL 380 GC+P TY ++ C R+D AK+++ +M K P + Y+ LI LC + EA +Y +EM GI P +S+L L +G+ +A+ L Sbjct: 187 GCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMEL 284 HSP 3 Score: 56.225 bits (134), Expect = 1.055e-8 Identity = 23/74 (31.08%), Postives = 39/74 (52.70%), Query Frame = -2 Query: 159 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRP 380 GC P + TY ++ C E ++ A ++ D+M ++G+ P +Y +I+ C K EA + EM+ GI P Sbjct: 292 GCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITP 365 HSP 4 Score: 55.8398 bits (133), Expect = 1.584e-8 Identity = 30/98 (30.61%), Postives = 47/98 (47.96%), Query Frame = -2 Query: 87 GCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKVKGVLPGMHMYSDLITSLCHKDKLGEACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKKDEALNL 380 G EP V TY ++ C + R A ++++ M +G P M Y+ LIT LC + K+ EA + M G++P A ++ + K EA N Sbjct: 257 GIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANF 354 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0018368 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0018368 ID=g.arboreum_cottongen_reftransV1_0018368; Name=g.arboreum_cottongen_reftransV1_0018368; organism=Gossypium arboreum; type=contig; length=384bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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