g.arboreum_cottongen_reftransV1_0021466, g.arboreum_cottongen_reftransV1_0021466 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: A0A0B0Q234_GOSAR (Dna-directed rna polymerases i, ii, and iii subunit rpabc1 OS=Gossypium arboreum GN=F383_16361 PE=4 SV=1) HSP 1 Score: 465.692 bits (1197), Expect = 6.202e-163 Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = -2 Query: 192 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 875 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW Sbjct: 1 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 228
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: A0A0D2NJ30_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G1333002 PE=4 SV=1) HSP 1 Score: 461.84 bits (1187), Expect = 2.412e-161 Identity = 226/228 (99.12%), Postives = 227/228 (99.56%), Query Frame = -2 Query: 192 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 875 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRY+LSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKR LVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW Sbjct: 1 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYYLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRTLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 228
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: A0A0D2RU93_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G1333002 PE=4 SV=1) HSP 1 Score: 457.603 bits (1176), Expect = 1.196e-159 Identity = 226/229 (98.69%), Postives = 227/229 (99.13%), Query Frame = -2 Query: 192 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRM-LVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 875 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRY+LSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKR LVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW Sbjct: 1 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYYLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRQTLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 229
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: A0A061EW60_THECC (Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1 OS=Theobroma cacao GN=TCM_024387 PE=4 SV=1) HSP 1 Score: 421.779 bits (1083), Expect = 1.492e-145 Identity = 201/228 (88.16%), Postives = 220/228 (96.49%), Query Frame = -2 Query: 192 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 875 MEG GLEGDGSNGEALGKCLSG+VDDGSTESHRY+LSRRTVLEMLRDRGYAVP +EI+LSL EFRAI+GQSPDFDRL+LS THKTD SKR+LVVFYGPG+VKVSGIRLIAGLIT+KE+LTGLIL++QNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKP+H+VLTE EKQ+LLQKYSIEEKQLPRLLKKDAIARYYG+E+GQV+KV Y GEIT+SHVTYRCVW Sbjct: 1 MEGNGLEGDGSNGEALGKCLSGVVDDGSTESHRYYLSRRTVLEMLRDRGYAVPISEINLSLQEFRAIYGQSPDFDRLRLSATHKTDPSKRILVVFYGPGMVKVSGIRLIAGLITNKESLTGLILVLQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPKHQVLTEQEKQKLLQKYSIEEKQLPRLLKKDAIARYYGYERGQVVKVMYDGEITQSHVTYRCVW 228
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: A0A0D2SP67_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G1333002 PE=4 SV=1) HSP 1 Score: 381.333 bits (978), Expect = 6.827e-130 Identity = 190/204 (93.14%), Postives = 192/204 (94.12%), Query Frame = -2 Query: 264 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFE 875 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRY+LSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKR LVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQ L A+ YY E Sbjct: 1 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYYLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRTLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQAAILTVGRALVEYYSCE 204
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: A0A0D2RMD1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G1333002 PE=4 SV=1) HSP 1 Score: 376.711 bits (966), Expect = 4.793e-128 Identity = 185/187 (98.93%), Postives = 186/187 (99.47%), Query Frame = -2 Query: 315 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQ 875 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRY+LSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKR LVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQ Sbjct: 1 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYYLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRTLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQ 187
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: A0A0D2Q0F3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G1333002 PE=4 SV=1) HSP 1 Score: 375.555 bits (963), Expect = 1.200e-127 Identity = 185/188 (98.40%), Postives = 187/188 (99.47%), Query Frame = -2 Query: 312 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQL 875 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRY+LSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKR LVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQ+ Sbjct: 1 MEGIGLEGDGSNGEALGKCLSGLVDDGSTESHRYYLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRTLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQV 188
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: B9ST46_RICCO (DNA-directed RNA polymerase II, putative OS=Ricinus communis GN=RCOM_0248850 PE=4 SV=1) HSP 1 Score: 355.91 bits (912), Expect = 1.510e-119 Identity = 165/217 (76.04%), Postives = 191/217 (88.02%), Query Frame = -2 Query: 192 NGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 842 N E LGKC S DDG+ E+HRY+LSRRTVLEMLRDRGY+VP++EIDLSL EFRAIHG +PD DRLK S TH +D SKRMLV+F GPG++KVS IR IAG I +K++LTGLIL++QN ITNQA+KA+DLF FKVE+FQITDLLVNITKHVLKP+H+VLT+ EKQ+LL+ Y IEEKQLPRLL+KDAIARYYG EKGQV+KVTY GEITESHVTYRCVW Sbjct: 22 NMEGLGKCFSSYADDGTHETHRYYLSRRTVLEMLRDRGYSVPSSEIDLSLQEFRAIHGPNPDIDRLKFSATHTSDPSKRMLVLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQITNQAMKAVDLFKFKVEMFQITDLLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQLPRLLRKDAIARYYGLEKGQVVKVTYSGEITESHVTYRCVW 238
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: A0A067K1X8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22486 PE=4 SV=1) HSP 1 Score: 353.984 bits (907), Expect = 9.206e-119 Identity = 168/225 (74.67%), Postives = 196/225 (87.11%), Query Frame = -2 Query: 192 GLEGDGS-NGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 863 G E +GS + ALG+CLS D+GS ES RY+LSRRTVLEML+DRGYA+P+ +I++SL EFRAIHGQ PD DRLK+S HK++ +KRMLV+F GPGVVKVS +R+IA I +K+ LTGLILI+QN ITNQALKA+DLF FKVE+FQITDLLVNITKHVLKP+H VLTE EKQ+LL+KYSIEEKQLPRLLKKDAIARYYG EKGQV+KVTY G+ITESHVTYRCVW Sbjct: 14 GAETNGSFDMGALGRCLSSYGDEGSAESCRYYLSRRTVLEMLKDRGYAIPSVDINISLQEFRAIHGQDPDIDRLKISAIHKSNPNKRMLVIFCGPGVVKVSSVRVIAAQIVNKDILTGLILILQNQITNQALKAMDLFKFKVEMFQITDLLVNITKHVLKPKHEVLTEREKQKLLKKYSIEEKQLPRLLKKDAIARYYGLEKGQVVKVTYSGDITESHVTYRCVW 238
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Match: B9IHS9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s03800g PE=4 SV=2) HSP 1 Score: 343.969 bits (881), Expect = 7.967e-115 Identity = 162/221 (73.30%), Postives = 196/221 (88.69%), Query Frame = -2 Query: 192 DGSNG-EALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 851 +GS G E+LG+CLS VD+GSTESHRY+LSRRTVLEML+DRGY+VP++EID+SL +FR ++GQ+PD + LK S THK+D SKRMLV+F G GVVKV IRLI IT +++LTGLIL++QN+ITNQA+KALDLF FK+EIFQITDLLVNITKH+LKP+H+VL+E KQRLL+KYSIEEKQLPRLLKKDAI+RYYG E+GQV+KVTY G+IT SHVTYRCVW Sbjct: 23 NGSFGMESLGRCLSSFVDEGSTESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQDFRGVYGQNPDIELLKFSATHKSDPSKRMLVIFCGLGVVKVGMIRLITVQITDRDSLTGLILVLQNNITNQAMKALDLFKFKIEIFQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSIEEKQLPRLLKKDAISRYYGLERGQVVKVTYDGDITGSHVTYRCVW 243
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPE5A_ARATH (DNA-directed RNA polymerase V subunit 5A OS=Arabidopsis thaliana GN=NRPE5A PE=1 SV=1) HSP 1 Score: 303.138 bits (775), Expect = 5.800e-101 Identity = 138/210 (65.71%), Postives = 175/210 (83.33%), Query Frame = -2 Query: 192 CLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCVW 821 CLS VD S ESHRY+L+RR L+MLRDRGY V + +I+LSLH+FR ++G+ PD DRL++S H++DS+K++ +VF+G +VKV+ IR + I S+ET+TGLIL++QNH+TNQALKA++LFSFKVEIFQITDLLVNITKH LKPQH+VL + EK LL+K+SIEEKQLPR+ KKDAI RYYG EKGQV+KV Y GE+TESHV +RCVW Sbjct: 13 CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKGQVVKVNYRGELTESHVAFRCVW 222
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPD5B_ARATH (DNA-directed RNA polymerases IV and V subunit 5B OS=Arabidopsis thaliana GN=NRPD5B PE=1 SV=1) HSP 1 Score: 277.33 bits (708), Expect = 6.673e-91 Identity = 126/204 (61.76%), Postives = 169/204 (82.84%), Query Frame = -2 Query: 195 VDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 806 + S E H+Y+L+RRT +EMLRDRGY V + +I+LSL +FRA++G+ PD D L++S H+ DSSK++ VVF G G+VKV+ +R+IA + S+E +TGLIL++Q+HITNQALKA++LFSFKVE+F+ITDLLVN++KHVL+P+H+VL + EK+ LL+K+SIEEKQLPRL KD I RYYG E GQV+KVTY E++ESHVTYRCV Sbjct: 14 ISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSFKVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETGQVMKVTYKDELSESHVTYRCV 217
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPE5C_ARATH (DNA-directed RNA polymerase V subunit 5C OS=Arabidopsis thaliana GN=NRPE5C PE=2 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 2.305e-60 Identity = 97/219 (44.29%), Postives = 144/219 (65.75%), Query Frame = -2 Query: 195 DGSNGEALGKCLSGLVDDGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 851 DG+N C+S D G ES R++L+R T EMLRDRGY V E+ L+L EFR++ G+ P+ +RL++ V ++D K++LVVF G + V +R + I++ L +IL++Q+ + + A KAL F F VE F I DLLVNITKH+ +P+ +L + EK++LL+K+++E+KQLP L +KD+ RYYG +K QV+K+TY E VTYRC+ Sbjct: 20 DGTN------CISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQVVKITYSKEPVGDFVTYRCI 232
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPB5A_ARATH (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana GN=NRPB5A PE=1 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 4.643e-34 Identity = 71/200 (35.50%), Postives = 120/200 (60.00%), Query Frame = -2 Query: 195 ESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDRLKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFS--FKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 788 E R + ++T+++MLRDRGY + ++E+ ++ +F HG + + L + D+S ++ + F V V +++ + S E + IL+VQ ++T A + S F +E+FQ ++LVNI +HVL P+H+VLT EK+ LL++Y+++E QLPR+ D IARY+G ++GQV+K+ E +VTYR V Sbjct: 6 ELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKS-ENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRYV 204
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_PONAB (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii GN=POLR2E PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 3.428e-33 Identity = 73/209 (34.93%), Postives = 117/209 (55.98%), Query Frame = -2 Query: 195 DGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDR-----LKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFK--VEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 800 D E++R + R+T++++ DRGY V E+D +L EFRA G P R L + V H D + +M V F V + I++ + +E +T +++VQ +T A ++L + K +E F +LL+NIT+H L P+H V+T+ E LL +Y + E QLPR+ D +ARY+G ++GQV+K+ E ++TYR V Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRM-QEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens GN=POLR2E PE=1 SV=4) HSP 1 Score: 125.946 bits (315), Expect = 1.084e-32 Identity = 72/209 (34.45%), Postives = 117/209 (55.98%), Query Frame = -2 Query: 195 DGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDR-----LKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFK--VEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 800 D E++R + R+T++++ DRGY V E+D +L EF+A G P R L + V H D + +M V F V + I++ + +E +T +++VQ +T A ++L + K +E F +LL+NIT+H L P+H V+T+ E LL +Y + E QLPR+ D +ARY+G ++GQV+K+ E ++TYR V Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRM-QEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_RAT (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus GN=Polr2e PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.201e-32 Identity = 72/209 (34.45%), Postives = 118/209 (56.46%), Query Frame = -2 Query: 195 DGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDR-----LKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKAL-DLFS-FKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 800 D E++R + R+T++++ DRGY V E+D +L EF+A G P R L + V H D + +M V F V + I++ + +E +T +++VQ +T A ++L D+ + +E F +LL+NIT+H L P+H V+T+ E LL +Y + E QLPR+ D +ARY+G ++GQV+K+ E ++TYR V Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRM-QEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus GN=Polr2e PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.201e-32 Identity = 72/209 (34.45%), Postives = 118/209 (56.46%), Query Frame = -2 Query: 195 DGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDR-----LKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKAL-DLFS-FKVEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 800 D E++R + R+T++++ DRGY V E+D +L EF+A G P R L + V H D + +M V F V + I++ + +E +T +++VQ +T A ++L D+ + +E F +LL+NIT+H L P+H V+T+ E LL +Y + E QLPR+ D +ARY+G ++GQV+K+ E ++TYR V Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRM-QEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_CAEEL (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans GN=rpb-5 PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.218e-32 Identity = 70/209 (33.49%), Postives = 117/209 (55.98%), Query Frame = -2 Query: 195 DGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDR-----LKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLITSKETLTGLILIVQNHITNQALKALDLFSFK--VEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 800 D E++R + R+TVL+M+ DRGY V E+D L F+ +G P + L + V H D + +M V F + + I+ I + ++ ++ I++VQ +T A +++ + K +E F +L+VNIT+H L P+H V+T EK LL +Y +++ QLPR+ + D +ARY+G +GQV+K+ E ++TYR V Sbjct: 3 DDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQM-QEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLV 210
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Match: RPAB1_CAEBR (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae GN=rpb-5 PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 2.473e-32 Identity = 73/211 (34.60%), Postives = 118/211 (55.92%), Query Frame = -2 Query: 195 DGSTESHRYFLSRRTVLEMLRDRGYAVPNTEIDLSLHEFRAIHGQSPDFDR-----LKLSVTHKTDSSKRMLVVFYGPGVVKVSGIRLIAGLI--TSKETLTGLILIVQNHITNQALKALDLFSFK--VEIFQITDLLVNITKHVLKPQHRVLTEHEKQRLLQKYSIEEKQLPRLLKKDAIARYYGFEKGQVIKVTYGGEITESHVTYRCV 800 D E++R + R+TVL+M+ DRGY V E+D L F+ G P + L + V H D + +M V F P K+ GI+ I + ++ ++ I++VQ +T A +++ + K +E F +L+VNIT+H L P+H V+T EK LL +Y +++ QLPR+ + D +ARY+G +GQV+K+ E ++TYR V Sbjct: 3 DDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLTILVAHNDDPADQMFVFF--PEDTKI-GIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLV 210 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0021466 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0021466 ID=g.arboreum_cottongen_reftransV1_0021466; Name=g.arboreum_cottongen_reftransV1_0021466; organism=Gossypium arboreum; type=contig; length=960bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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