g.arboreum_cottongen_reftransV1_0017305, g.arboreum_cottongen_reftransV1_0017305 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A0B0N443_GOSAR (DUF21 domain-containing-like protein OS=Gossypium arboreum GN=F383_10455 PE=4 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 1.690e-54 Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = -2 Query: 3 SSHMAAVVRGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVVRGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCKYDAATNGPSMTSEDIEDGEVIGIITLEDVFEELLQEEIV Sbjct: 326 SSHMAAVVRGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCKYDAATNGPSMTSEDIEDGEVIGIITLEDVFEELLQEEIV 431
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A0D2RF94_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G040600 PE=4 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 2.504e-49 Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = -2 Query: 3 SSHMAAVVRGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVVRG SKNASATVDGEKSEENN +SNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCK +AATNGPSMTSEDIEDGEVIGIITLEDVFEELLQEEIV Sbjct: 160 SSHMAAVVRGKSKNASATVDGEKSEENNSLSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCK-NAATNGPSMTSEDIEDGEVIGIITLEDVFEELLQEEIV 264
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A0D2R8U4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G040600 PE=4 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 7.903e-49 Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = -2 Query: 3 SSHMAAVVRGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVVRG SKNASATVDGEKSEENN +SNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCK +AATNGPSMTSEDIEDGEVIGIITLEDVFEELLQEEIV Sbjct: 246 SSHMAAVVRGKSKNASATVDGEKSEENNSLSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCK-NAATNGPSMTSEDIEDGEVIGIITLEDVFEELLQEEIV 350
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A0D2N7L7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G040600 PE=4 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 8.046e-49 Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = -2 Query: 3 SSHMAAVVRGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVVRG SKNASATVDGEKSEENN +SNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCK +AATNGPSMTSEDIEDGEVIGIITLEDVFEELLQEEIV Sbjct: 231 SSHMAAVVRGKSKNASATVDGEKSEENNSLSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCK-NAATNGPSMTSEDIEDGEVIGIITLEDVFEELLQEEIV 335
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A0D2PMG6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G040600 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 2.254e-48 Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = -2 Query: 3 SSHMAAVVRGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVVRG SKNASATVDGEKSEENN +SNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCK +AATNGPSMTSEDIEDGEVIGIITLEDVFEELLQEEIV Sbjct: 326 SSHMAAVVRGKSKNASATVDGEKSEENNSLSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCK-NAATNGPSMTSEDIEDGEVIGIITLEDVFEELLQEEIV 430
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A0D2PMH0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G040600 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 3.466e-48 Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = -2 Query: 3 SSHMAAVVRGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVVRG SKNASATVDGEKSEENN +SNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCK +AATNGPSMTSEDIEDGEVIGIITLEDVFEELLQEEIV Sbjct: 361 SSHMAAVVRGKSKNASATVDGEKSEENNSLSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCK-NAATNGPSMTSEDIEDGEVIGIITLEDVFEELLQEEIV 465
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A061ELF2_THECC (CBS domain-containing protein with a domain of Uncharacterized protein function isoform 2 OS=Theobroma cacao GN=TCM_020501 PE=4 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.333e-23 Identity = 75/109 (68.81%), Postives = 85/109 (77.98%), Query Frame = -2 Query: 3 SSHMAAVVRGNSKNASA--TVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPP-LCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVV+ KN TVDG+K EEN + A+SQLTTPLL K +EKPES+ VDIDK+ +P L + DAATNG +TSEDIEDGEVIGIITLEDVFEELLQEEIV Sbjct: 324 SSHMAAVVKAKGKNKILPPTVDGQKYEENK--VSLADSQLTTPLLSKLEEKPESIAVDIDKAPRPANLNRQDAATNGLPITSEDIEDGEVIGIITLEDVFEELLQEEIV 430
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A061EMA8_THECC (CBS domain-containing protein with a domain of Uncharacterized protein function isoform 1 OS=Theobroma cacao GN=TCM_020501 PE=4 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 5.308e-23 Identity = 77/109 (70.64%), Postives = 87/109 (79.82%), Query Frame = -2 Query: 3 SSHMAAVVRGNSKNASA--TVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPP-LCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVV+ KN TVDG+K EEN +VS A+SQLTTPLL K +EKPES+ VDIDK+ +P L + DAATNG +TSEDIEDGEVIGIITLEDVFEELLQEEIV Sbjct: 458 SSHMAAVVKAKGKNKILPPTVDGQKYEEN-KVS-LADSQLTTPLLSKLEEKPESIAVDIDKAPRPANLNRQDAATNGLPITSEDIEDGEVIGIITLEDVFEELLQEEIV 564
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A0D2VN89_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G170300 PE=4 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 7.414e-23 Identity = 75/109 (68.81%), Postives = 86/109 (78.90%), Query Frame = -2 Query: 3 SSHMAAVVR--GNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPP-LCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVV+ G +KN TVDG KSEEN +VS +A++QLTTPLL K DEKPES+ VD+ K +P + DA T G S+TSEDIEDGEVIGIITLEDVFEELLQEEIV Sbjct: 215 SSHMAAVVKAKGKNKNLPLTVDGLKSEEN-KVS-SADTQLTTPLLSKLDEKPESIVVDVGKLSRPTNTSRLDAVTYGLSVTSEDIEDGEVIGIITLEDVFEELLQEEIV 321
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Match: A0A0D2UU91_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G170300 PE=4 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.327e-22 Identity = 75/109 (68.81%), Postives = 86/109 (78.90%), Query Frame = -2 Query: 3 SSHMAAVVR--GNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPP-LCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAVV+ G +KN TVDG KSEEN +VS+A ++QLTTPLL K DEKPES+ VD+ K +P + DA T G S+TSEDIEDGEVIGIITLEDVFEELLQEEIV Sbjct: 321 SSHMAAVVKAKGKNKNLPLTVDGLKSEEN-KVSSA-DTQLTTPLLSKLDEKPESIVVDVGKLSRPTNTSRLDAVTYGLSVTSEDIEDGEVIGIITLEDVFEELLQEEIV 427
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy Swiss-Prot
Match: Y4423_ARATH (DUF21 domain-containing protein At4g14230 OS=Arabidopsis thaliana GN=CBSDUF2 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-13 Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = -2 Query: 3 SSHMAAV--VRGNSKNASATVDGEKSEENNRVSNAAESQLTTPLLPKQDEKPESVTVDIDKSFKPPLCKYDAATNGPSMTSXXXXXXXXXXXITLEDVFEELLQEEIV 320 SSHMAAV V+G SK +T+ E S E+N SN S+LT PLL K++ +SV V IDK+ +A G S TSE+IEDG+VIGIITLEDVFEELLQEEIV Sbjct: 320 SSHMAAVVKVKGKSKGHPSTLHEENSGESNVSSN--NSELTAPLLLKREGNHDSVIVRIDKANGQSFIS-EAGRQGFSHTSEEIEDGDVIGIITLEDVFEELLQEEIV 424 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0017305 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0017305 ID=g.arboreum_cottongen_reftransV1_0017305; Name=g.arboreum_cottongen_reftransV1_0017305; organism=Gossypium arboreum; type=contig; length=321bpback to top |