g.arboreum_cottongen_reftransV1_0012136, g.arboreum_cottongen_reftransV1_0012136 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A0B0PNX6_GOSAR (Pre-mRNA-processing factor 40 A OS=Gossypium arboreum GN=F383_10570 PE=4 SV=1) HSP 1 Score: 311.612 bits (797), Expect = 2.228e-96 Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVTGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA Sbjct: 233 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVTGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 424
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A0D2R0V6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G027200 PE=4 SV=1) HSP 1 Score: 302.753 bits (774), Expect = 2.521e-95 Identity = 187/192 (97.40%), Postives = 190/192 (98.96%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAA+SQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSV+GPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTV APSVGA TAVTRSSETT+TQDTMHFADGASAQDIEEAKKGMATA Sbjct: 210 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATA 401
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A0D2V4N8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G027200 PE=4 SV=1) HSP 1 Score: 302.368 bits (773), Expect = 2.660e-94 Identity = 187/192 (97.40%), Postives = 190/192 (98.96%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAA+SQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSV+GPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTV APSVGA TAVTRSSETT+TQDTMHFADGASAQDIEEAKKGMATA Sbjct: 210 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATA 401
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A0D2V4N5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G027200 PE=4 SV=1) HSP 1 Score: 303.908 bits (777), Expect = 8.817e-94 Identity = 187/192 (97.40%), Postives = 190/192 (98.96%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAA+SQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSV+GPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTV APSVGA TAVTRSSETT+TQDTMHFADGASAQDIEEAKKGMATA Sbjct: 210 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATA 401
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A0D2SLJ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G027200 PE=4 SV=1) HSP 1 Score: 303.138 bits (775), Expect = 4.035e-93 Identity = 187/192 (97.40%), Postives = 190/192 (98.96%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAA+SQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSV+GPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTV APSVGA TAVTRSSETT+TQDTMHFADGASAQDIEEAKKGMATA Sbjct: 210 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATA 401
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A0D2U4X1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G027200 PE=4 SV=1) HSP 1 Score: 303.138 bits (775), Expect = 6.560e-93 Identity = 187/192 (97.40%), Postives = 190/192 (98.96%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAA+SQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSV+GPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTV APSVGA TAVTRSSETT+TQDTMHFADGASAQDIEEAKKGMATA Sbjct: 252 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATA 443
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A0D2U4W8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G027200 PE=4 SV=1) HSP 1 Score: 295.049 bits (754), Expect = 2.720e-91 Identity = 182/187 (97.33%), Postives = 185/187 (98.93%), Query Frame = 3 Query: 18 RADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578 RADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAA+SQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSV+GPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTV APSVGA TAVTRSSETT+TQDTMHFADGASAQDIEEAKKGMATA Sbjct: 33 RADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATA 219
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A0D2U7V5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G027200 PE=4 SV=1) HSP 1 Score: 296.59 bits (758), Expect = 1.360e-90 Identity = 186/192 (96.88%), Postives = 189/192 (98.44%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAA+SQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSV+GPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTV APSVGA TAVT SSETT+TQDTMHFADGASAQDIEEAKKGMATA Sbjct: 210 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVT-SSETTATQDTMHFADGASAQDIEEAKKGMATA 400
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A061FFM2_THECC (Pre-mRNA-processing protein 40A isoform 8 OS=Theobroma cacao GN=TCM_034659 PE=4 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 3.653e-67 Identity = 146/195 (74.87%), Postives = 163/195 (83.59%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTP---VANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578 MTPIERADASTVWKEFTTPEGRKYY+NKVTK+SKWTIPEELKLAREQAQ ASQG PS +GVA QAPVA AVS+AE P AIPVSSNT Q SSPVSVTP VANPSPT V+G T PV+QSAA +A+ VQ P V+VTP+PAV S GST P SV ANT + RS E+T++QD++HF +GASAQDIEEAKKGMATA Sbjct: 255 MTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVASQGAPSDTGVASQAPVAGAVSSAEMPAAAIPVSSNTSQASSPVSVTPVAAVANPSPTLVSGSTVVPVSQSAATNASEVQSPAVAVTPLPAVSSGGSTTPVTSVNANTTMIRSLESTASQDSVHFTNGASAQDIEEAKKGMATA 449
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Match: A0A061FG73_THECC (Pre-mRNA-processing protein 40A isoform 7 OS=Theobroma cacao GN=TCM_034659 PE=4 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 3.806e-67 Identity = 146/195 (74.87%), Postives = 163/195 (83.59%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTP---VANXXXXXXXXXXXXXXAQSAAMSATGVQLXXXXXXXXXXXXXRGSTVPAPSVGANTAVTRSSETTSTQDTMHFADGASAQDIEEAKKGMATA 578 MTPIERADASTVWKEFTTPEGRKYY+NKVTK+SKWTIPEELKLAREQAQ ASQG PS +GVA QAPVA AVS+AE P AIPVSSNT Q SSPVSVTP VANPSPT V+G T PV+QSAA +A+ VQ P V+VTP+PAV S GST P SV ANT + RS E+T++QD++HF +GASAQDIEEAKKGMATA Sbjct: 255 MTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVASQGAPSDTGVASQAPVAGAVSSAEMPAAAIPVSSNTSQASSPVSVTPVAAVANPSPTLVSGSTVVPVSQSAATNASEVQSPAVAVTPLPAVSSGGSTTPVTSVNANTTMIRSLESTASQDSVHFTNGASAQDIEEAKKGMATA 449
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy Swiss-Prot
Match: PR40A_ARATH (Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A PE=1 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 4.023e-27 Identity = 60/99 (60.61%), Postives = 75/99 (75.76%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVS--AAETPTTAIPVSSNTL--QDSSPV 287 MTP+ERADASTVWKEFTTPEG+KYY+NKVTKESKWTIPE+LKLAREQAQ A+ + + S +G P + A + S A T T+ +P +S+ L SSP+ Sbjct: 219 MTPLERADASTVWKEFTTPEGKKYYYNKVTKESKWTIPEDLKLAREQAQLASEKTSLSEAGSTPLSHHAASSSDLAVSTVTSVVPSTSSALTGHSSSPI 317
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy Swiss-Prot
Match: PR35B_ARATH (Pre-mRNA-processing protein 40B OS=Arabidopsis thaliana GN=PRP40B PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 8.082e-19 Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 3 Query: 3 MTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQGTPSGSGVAPQAPVATAVSAAETPTTAIP 251 MT ERADA T WKE ++P+GRKYY+NK+TK+S WT+PEE+K+ REQA+ A+ QG P G+ + V T ++T +TA P Sbjct: 238 MTLFERADARTDWKEHSSPDGRKYYYNKITKQSTWTMPEEMKIVREQAEIASVQG-PHAEGIIDASEVLT---RSDTASTAAP 316 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0012136 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 2
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0012136 ID=g.arboreum_cottongen_reftransV1_0012136; Name=g.arboreum_cottongen_reftransV1_0012136; organism=Gossypium arboreum; type=contig; length=578bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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