g.arboreum_cottongen_reftransV1_0006769, g.arboreum_cottongen_reftransV1_0006769 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0006769
Unique Nameg.arboreum_cottongen_reftransV1_0006769
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length966
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr5chromosomeg.arboreum_cottongen_reftransV1_0006769:1..966 .
Chr5:8027116..8029419 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006769 vs. ExPASy TrEMBL
Match: A0A067LCE7_JATCU (MATE efflux family protein OS=Jatropha curcas GN=JCGZ_26747 PE=3 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 2.784e-117
Identity = 203/293 (69.28%), Postives = 249/293 (84.98%), Query Frame = -2
Query:   87 WGPLKALGIASAINGVGDIVLCSFLGYGIAGAAWATMVSQVVAGYMMIDSLNKKGFNAFAISVPSLDDLRTIFAISAPVFITMMAKVAFYALIIYFATNMGTYTVAAHQVMIQTYWMWTVWGEPLSQTAQSFMPELLYGINRNLSKARMXXXXXXXXXXXXXXXXXXXGTAVPWLFPNIFTPDQKVIDEMHKVLAPYFISLAVTPXXXXXXXXXXXGHDLKFVSLMMSGCFTLGAIXXXXXXXXXXXXXGCWYALVGFQWARFFLCLQRLLSPTGMLYSEESNDYKPEMLKVA 965
            WGPLKAL ++S +N VGD+VLCSFLGYGIAGAAWATMVSQVVAGYMMI++LNKKG+NAFA S+P+L++L  I  I+ PVF+TMM+KV FY+L+IYFAT MGT +VAAHQV++QTY M TVWGEPLSQTAQSFMPEL+YG+NR+L KARMLLKSL++IGA LG +LG +GT VPW  PN+FTPDQ VI EMHKVL PYF++LAVTP+  +LEGTL+AG DLKF+SL M+GC + G ++L+L +S G+GL GCW+ALVGFQW+RFFL LQRLLS  G+LYS + + YK E L  +
Sbjct:  275 WGPLKALAVSSILNLVGDVVLCSFLGYGIAGAAWATMVSQVVAGYMMIEALNKKGYNAFAFSIPTLNELSMIAGIATPVFVTMMSKVVFYSLLIYFATAMGTNSVAAHQVLLQTYSMCTVWGEPLSQTAQSFMPELIYGVNRSLIKARMLLKSLVVIGATLGALLGAIGTIVPWFLPNLFTPDQNVIQEMHKVLLPYFLALAVTPSTHSLEGTLMAGRDLKFLSLSMTGCLSFGTLILMLTNSKGYGLVGCWFALVGFQWSRFFLALQRLLSLDGVLYSVDLSRYKIEKLTAS 567          
BLAST of g.arboreum_cottongen_reftransV1_0006769 vs. ExPASy TrEMBL
Match: M5VNV7_PRUPE (MATE efflux family protein OS=Prunus persica GN=PRUPE_ppa003755mg PE=3 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 8.495e-117
Identity = 208/291 (71.48%), Postives = 254/291 (87.29%), Query Frame = -2
Query:   93 WGPLKALGIASAINGVGDIVLCSFLGYGIAGAAWATMVSQVVAGYMMIDSLNKKGFNAFAISVPSLDDLRTIFAISAPVFITMMAKVAFYALIIYFATNMGTYTVAAHQVMIQTYWMWTVWGEPLSQTAQSFMPELLYGINRNLSKARMXXXXXXXXXXXXXXXXXXXGTAVPWLFPNIFTPDQKVIDEMHKVLAPYFISLAVTPXXXXXXXXXXXGHDLKFVSLMMSGCFTLGAIXXXXXXXXXXXXXGCWYALVGFQWARFFLCLQRLLSPTGMLYSEESNDYKPEMLK 965
            WGPLKAL +AS ING+GD+VLCSFLGYGIAGAAWATMVSQVVAGYMMI++LNKKG+NA+AISVPS ++  T+  ++APVF+TM++K+AF++L++YFAT+MGT   AAHQVMIQT ++ TVWGEPLSQTAQSFMPEL+YG NR+L KARMLLKSL+I+GAI+G +LGI GT VPWLFPNIFTPDQK+I EMHKVL  +F++LAVTPA L  EGTLLAG DL+F+SL MSGC +LGA++LL VSS G+GL GCW+A+VGFQWAR FL L RL+SPTG+LYSE+ + Y  E L+
Sbjct:  259 WGPLKALAVASVINGIGDVVLCSFLGYGIAGAAWATMVSQVVAGYMMIEALNKKGYNAYAISVPSPEEFLTVLGLAAPVFVTMISKIAFFSLVVYFATSMGTNITAAHQVMIQTLFICTVWGEPLSQTAQSFMPELIYGANRSLPKARMLLKSLVIVGAIIGSVLGIGGTCVPWLFPNIFTPDQKIIQEMHKVLIQFFLALAVTPAILCFEGTLLAGRDLRFISLSMSGCLSLGALLLLFVSSRGYGLAGCWWAVVGFQWARLFLSLGRLVSPTGILYSEDMSQYNLEELR 549          
BLAST of g.arboreum_cottongen_reftransV1_0006769 vs. ExPASy TrEMBL
Match: V4LU88_EUTSA (MATE efflux family protein OS=Eutrema salsugineum GN=EUTSA_v10000106mg PE=3 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 1.172e-115
Identity = 204/293 (69.62%), Postives = 254/293 (86.69%), Query Frame = -2
Query:   87 WGPLKALGIASAINGVGDIVLCSFLGYGIAGAAWATMVSQVVAGYMMIDSLNKKGFNAFAISVPSLDDLRTIFAISAPVFITMMAKVAFYALIIYFATNMGTYTVAAHQVMIQTYWMWTVWGEPLSQTAQSFMPELLYGINRNLSKARMXXXXXXXXXXXXXXXXXXXGTAVPWLFPNIFTPDQKVIDEMHKVLAPYFISLAVTPXXXXXXXXXXXGHDLKFVSLMMSGCFTLGAIXXXXXXXXXXXXXGCWYALVGFQWARFFLCLQRLLSPTGMLYSEESNDYKPEMLKVA 965
            WGPLKAL +ASAING+GD+VLC+FLGYGIAGAAWATMVSQ+VA YMM+D+LNKKG++AF++ VPS  +L TIF ++APVFITMM+KV FY L++YFAT+MGT  +AAHQVM+QTY M TVWGEPLSQTAQSFMPELL+GINRNL KARMLLKSL+IIGA LG+++G +GTA+PWLFP IFT D+ V  EMHKV+ PYF++L++TP+  +LEGTLLAG DL+++SL M+GCF +G +VL+L+S+GGFGL GCWYALVGFQWARF L L RLLS  G+L+SE+++ Y  E +K A
Sbjct:  273 WGPLKALTVASAINGIGDVVLCTFLGYGIAGAAWATMVSQIVAAYMMMDALNKKGYSAFSLCVPSPSELLTIFGLAAPVFITMMSKVLFYTLLVYFATSMGTSVIAAHQVMLQTYTMSTVWGEPLSQTAQSFMPELLFGINRNLPKARMLLKSLVIIGATLGIVVGTIGTAIPWLFPGIFTQDKVVTFEMHKVIIPYFLALSITPSTHSLEGTLLAGRDLRYISLSMTGCFAVGGLVLMLLSNGGFGLRGCWYALVGFQWARFSLALIRLLSRNGVLHSEDTSRYA-EKVKAA 564          
BLAST of g.arboreum_cottongen_reftransV1_0006769 vs. ExPASy TrEMBL
Match: A0A067DY00_CITSI (MATE efflux family protein OS=Citrus sinensis GN=CISIN_1g008932mg PE=3 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 5.168e-115
Identity = 207/292 (70.89%), Postives = 246/292 (84.25%), Query Frame = -2
Query:   87 GPLKALGIASAINGVGDIVLCSFLGYGIAGAAWATMVSQVVAGYMMIDSLNKKGFNAFAISVPSLDDLRTIFAISAPVFITMMAKVAFYALIIYFATNMGTYTVAAHQVMIQTYWMWTVWGEPLSQTAQSFMPELLYGINRNLSKARMXXXXXXXXXXXXXXXXXXXGTAVPWLFPNIFTPDQKVIDEMHKVLAPYFISLAVTPXXXXXXXXXXXGHDLKFVSLMMSGCFTLGAIXXXXXXXXXXXXXGCWYALVGFQWARFFLCLQRLLSPTGMLYSEESNDYKPEMLKVA 962
            GPLKAL +ASAING+GD+ LCSFLGYGIAGAAWATMVSQVV+ YMMI SLN KG+NAF+ SVPS ++L TI  ++ PVFITM++KVAFY+LIIYFAT+MGT TVAAHQVMIQTY M +VWGEPLSQTAQSFMPEL+YG+NR+L KARMLLKSL++IG+ LGL+LG +G +VPW FPNIFT D+ VI EMHKVL PY +++ V+P+  +LEGTLLAG D+KF S+ MSGCF LGA+ +LL +S G+GLPGCW+ALV FQ ARF L L RLLSP G LYSE+ N YK E LK A
Sbjct:  258 GPLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGAL-VLLFASRGYGLPGCWFALVCFQSARFLLSLWRLLSPDGTLYSEDLNRYKMEKLKAA 548          
BLAST of g.arboreum_cottongen_reftransV1_0006769 vs. ExPASy TrEMBL
Match: A0A0B2RZD9_GLYSO (MATE efflux family protein OS=Glycine soja GN=glysoja_020571 PE=3 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 1.264e-114
Identity = 204/292 (69.86%), Postives = 248/292 (84.93%), Query Frame = -2
Query:   87 GPLKALGIASAINGVGDIVLCSFLGYGIAGAAWATMVSQVVAGYMMIDSLNKKGFNAFAISVPSLDDLRTIFAISAPVFITMMAKVAFYALIIYFATNMGTYTVAAHQVMIQTYWMWTVWGEPLSQTAQSFMPELLYGINRNLSKARMXXXXXXXXXXXXXXXXXXXGTAVPWLFPNIFTPDQKVIDEMHKVLAPYFISLAVTPXXXXXXXXXXXGHDLKFVSLMMSGCFTLGAIXXXXXXXXXXXXXGCWYALVGFQWARFFLCLQRLLSPTGMLYSEESNDYKPEMLKVA 962
            GPLKAL  A+ IN  G ++LC++LGYGI GAAWATMVSQVVA YMMI +LN KG+NA A S+PS  +L TIF ++APVFIT+M+KVAFYAL+IYFAT+MGT+T+AAHQVM+QTY M TVWGEPLSQT+QSFMPEL+YG+NR+LSKARMLL+SL+IIGAILGL+LGI+GT+VPWLFPNIFTPD+ VI EMHKVL PYFI+LAVTP  ++LEGTLLAG DLKF+SL MSGCF +G++ +L   S  +GL GCW++L  FQWARF + LQRLLSP G+LYSE++  YK   L+ A
Sbjct:  258 GPLKALAAATVINVAGCVLLCTYLGYGIVGAAWATMVSQVVASYMMIQNLNMKGYNALAFSIPSGKELLTIFGLAAPVFITLMSKVAFYALLIYFATSMGTHTMAAHQVMVQTYLMCTVWGEPLSQTSQSFMPELIYGVNRSLSKARMLLRSLVIIGAILGLLLGIIGTSVPWLFPNIFTPDRMVIQEMHKVLIPYFIALAVTPPTVSLEGTLLAGRDLKFISLSMSGCFCVGSL-VLWALSSRYGLLGCWFSLALFQWARFSMALQRLLSPKGILYSEDTEQYKLLKLRTA 548          
BLAST of g.arboreum_cottongen_reftransV1_0006769 vs. ExPASy Swiss-Prot
Match: MATE4_ARATH (MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 2.521e-115
Identity = 203/293 (69.28%), Postives = 250/293 (85.32%), Query Frame = -2
Query:   87 WGPLKALGIASAINGVGDIVLCSFLGYGIAGAAWATMVSQVVAGYMMIDSLNKKGFNAFAISVPSLDDLRTIFAISAPVFITMMAKVAFYALIIYFATNMGTYTVAAHQVMIQTYWMWTVWGEPLSQTAQSFMPELLYGINRNLSKARMXXXXXXXXXXXXXXXXXXXGTAVPWLFPNIFTPDQKVIDEMHKVLAPYFISLAVTPXXXXXXXXXXXGHDLKFVSLMMSGCFTLGAIXXXXXXXXXXXXXGCWYALVGFQWARFFLCLQRLLSPTGMLYSEESNDYKPEMLKVA 965
            WGPLKAL +ASAINGVGD+VLC+FLGYGIAGAAWATMVSQVVA YMM+D+LNKKG++AF+  VPS  +L TIF ++APVFITMM+KV FY L++YFAT+MGT  +AAHQVM+Q Y M TVWGEPLSQTAQSFMPELL+GINRNL KAR+LLKSL+IIGA LG+++G +GTAVPWLFP IFT D+ V  EMHKV+ PYF++L++TP+  +LEGTLLAG DL+++SL M+GC  +  ++L+L+S+GGFGL GCWYALVGFQWARF L L RLLS  G+LYSE+++ Y  E +K A
Sbjct:  268 WGPLKALAVASAINGVGDVVLCTFLGYGIAGAAWATMVSQVVAAYMMMDALNKKGYSAFSFCVPSPSELLTIFGLAAPVFITMMSKVLFYTLLVYFATSMGTNIIAAHQVMLQIYTMSTVWGEPLSQTAQSFMPELLFGINRNLPKARVLLKSLVIIGATLGIVVGTIGTAVPWLFPGIFTRDKVVTSEMHKVIIPYFLALSITPSTHSLEGTLLAGRDLRYISLSMTGCLAVAGLLLMLLSNGGFGLRGCWYALVGFQWARFSLSLFRLLSRDGVLYSEDTSRYA-EKVKAA 559          
BLAST of g.arboreum_cottongen_reftransV1_0006769 vs. ExPASy Swiss-Prot
Match: EDS5_ARATH (Enhanced disease susceptibility 5 OS=Arabidopsis thaliana GN=EDS5 PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.319e-92
Identity = 179/291 (61.51%), Postives = 231/291 (79.38%), Query Frame = -2
Query:   93 WGPLKALGIASAINGVGDIVLCSFLGYGIAGAAWATMVSQVVAGYMMIDSLNKKGFNAFAISVPSLDDLRTIFAISAPVFITMMAKVAFYALIIYFATNMGTYTVAAHQVMIQTYWMWTVWGEPLSQTAQSFMPELLYGINRNLSKARMXXXXXXXXXXXXXXXXXXXGTAVPWLFPNIFTPDQKVIDEMHKVLAPYFISLAVTPXXXXXXXXXXXGHDLKFVSLMMSGCFTLGAIXXXXXXXXXXXXXGCWYALVGFQWARFFLCLQRLLSPTGMLYSEESNDYKPEMLK 965
            WGPLKAL  A+ ING+GD +LC FLG GIAGAAWAT  SQ+V+ YMM+DSLNK+G+NA++ ++PS  +L  I A++APVFI++ +K+AFY+ IIY AT+MGT+ +AAHQVM QTY M  VWGEPLSQTAQSFMPE+LYG NRNL KAR LLKSL+IIGA LGL+LG++GTAVP LFP ++T D+ +I EMH++L P+F++L+  P  ++LEGTLLAG DLKFVS +MS  F +G + L+ V+  G+GL GCW+ LVGFQW RF L L+RLLSP G+L S+  + Y  E +K
Sbjct:  251 WGPLKALAAATIINGLGDTILCLFLGQGIAGAAWATTASQIVSAYMMMDSLNKEGYNAYSFAIPSPQELWKISALAAPVFISIFSKIAFYSFIIYCATSMGTHVLAAHQVMAQTYRMCNVWGEPLSQTAQSFMPEMLYGANRNLPKARTLLKSLMIIGATLGLVLGVIGTAVPGLFPGVYTHDKVIISEMHRLLIPFFMALSALPMTVSLEGTLLAGRDLKFVSSVMSSSFIIGCLTLMFVTRSGYGLLGCWFVLVGFQWGRFGLYLRRLLSPGGILNSDGPSPYTVEKIK 541          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006769 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067LCE7_JATCU2.784e-11769.28MATE efflux family protein OS=Jatropha curcas GN=J... [more]
M5VNV7_PRUPE8.495e-11771.48MATE efflux family protein OS=Prunus persica GN=PR... [more]
V4LU88_EUTSA1.172e-11569.62MATE efflux family protein OS=Eutrema salsugineum ... [more]
A0A067DY00_CITSI5.168e-11570.89MATE efflux family protein OS=Citrus sinensis GN=C... [more]
A0A0B2RZD9_GLYSO1.264e-11469.86MATE efflux family protein OS=Glycine soja GN=glys... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0006769 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MATE4_ARATH2.521e-11569.28MATE efflux family protein 4, chloroplastic OS=Ara... [more]
EDS5_ARATH2.319e-9261.51Enhanced disease susceptibility 5 OS=Arabidopsis t... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002528Multi antimicrobial extrusion proteinPFAMPF01554MatEcoord: 75..234
e-value: 6.8E-7
score: 28.9
NoneNo IPR availablePANTHERPTHR11206:SF116ENHANCED DISEASE SUSCEPTIBILITY 5-RELATEDcoord: 1..289
NoneNo IPR availablePANTHERPTHR11206MULTIDRUG RESISTANCE PROTEINcoord: 1..289
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 69..94
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 269..290
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 46..68
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 174..192
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 244..248
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 249..268
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 193..212
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..45
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 151..173
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 213..218
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 95..150
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 219..243
NoneNo IPR availableTMHMMTMhelixcoord: 190..212
NoneNo IPR availableTMHMMTMhelixcoord: 69..91
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
NoneNo IPR availableTMHMMTMhelixcoord: 219..241
NoneNo IPR availableTMHMMTMhelixcoord: 148..170

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0006769 ID=g.arboreum_cottongen_reftransV1_0006769; Name=g.arboreum_cottongen_reftransV1_0006769; organism=Gossypium arboreum; type=contig; length=966bp
ATTAATGAAAAGAATCATATAAGCAGCCAATATTAAAGCACAGGCTGAGA
TTGCAGTGATTCAATGTCTTTGCAAATGGTATACTAAGCAACTTTTAGCA
TCTCGGGTTTATAATCGTTCGATTCTTCAGAATAAAGCATGCCGGTAGGT
GAAAGGAGGCGTTGTAGACAAAGAAAAAACCGAGCCCATTGAAATCCTAC
GAGGGCATACCAGCAGCCCGGCAAACCGAATCCACCACTGCTCACCAGCA
GTAGTACAATAGCACCCAACGTGAAGCATCCACTCATCATTAAGCTAACG
AATTTAAGATCATGCCCTGCCAACAATGTTCCTTCAAGGGCGAGAGCAGC
TGGTGTCACGGCTAGTGAGATAAAGTACGGTGCCAACACTTTGTGCATCT
CGTCTATGACCTTCTGGTCGGGTGTGAAGATATTGGGAAATAACCAAGGA
ACTGCTGTTCCGACTATACCCAATATCAGTCCAAGGATAGCTCCGATGAT
GATAAGTGACTTTAGCAGCATTCGAGCCTTTGACAAATTTCTATTGATTC
CATATAGCAATTCTGGCATAAACGACTGTGCGGTTTGGGATAGAGGCTCG
CCCCATACGGTCCACATCCAATAGGTTTGGATCATGACCTGATGAGCAGC
CACCGTGTACGTGCCCATATTCGTCGCAAAATAGATGATGAGTGCATAGA
AAGCAACCTTTGCCATCATCGTTATGAAAACCGGGGCAGAGATTGCGAAA
ATCGTCCTAAGGTCATCGAGGGACGGAACCGAGATTGCAAATGCATTAAA
TCCTTTCTTGTTTAAAGAATCAATCATCATGTAACCAGCAACAACTTGTG
ACACCATTGTTGCCCAAGCAGCACCAGCTATGCCATAGCCTAAGAAGCTG
CAAAGTACTATATCTCCAACTCCATTTATAGCACTAGCAATACCTAAGGC
CTTCAAAGGTCCCCAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002528MATE_fam
Vocabulary: Molecular Function
TermDefinition
GO:0015297antiporter activity
GO:0015238drug transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006855xenobiotic transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane