g.arboreum_cottongen_reftransV1_0015984, g.arboreum_cottongen_reftransV1_0015984 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015984 vs. ExPASy TrEMBL
Match: A0A072VN13_MEDTR (Transcription factor bZIP88 OS=Medicago truncatula GN=MTR_1g080920 PE=4 SV=1) HSP 1 Score: 341.658 bits (875), Expect = 1.097e-111 Identity = 190/311 (61.09%), Postives = 232/311 (74.60%), Query Frame = 3 Query: 3 FLKNKLNLACAAVAMSRASFVKPQDSAVRADSGSQASDTPQSGSIATSKGAG----------DKDGNAQSGFPSVVNGQKKIGAQVRPSTSGSSREMSEDDEVEGENETMENMDPADAKRVRRMLXXXXXXXXXXXXKQAHLTELETQVSQLRVENATLLKRLTDISQKYNESAVDNRVLKADVETLRAKVKMAEDSVKRITGLSPVFHASPEISTAGMSSFDGSPSDTSTEAAVSVQDGPKHPLYQAAANKPISTHDLRTNNALADISSVENIQPKSEVSSVSGNKIGRT-PSMQRVASLEHLQKRICGG 902 FLK+KLNLACAAVAM+R S K QD A ++G Q+S+ Q GS S+G+G DKD PS+ + QKK +RPSTSGSSRE S+DDE EGE +++ DP D KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLR EN+TL+KRLTD++QKY +SAVDNRVLKADVETLRAKVKMAE++VKR+TGL+P+FH P++S+ M +FDGSPSD +AAV VQD P H YQ + P+ HD+R +N L +ISS+EN+QP + + V GNK+G+T P + RVASLEHLQKRI GG Sbjct: 92 FLKSKLNLACAAVAMTRGSLTKSQDLATFPENGPQSSNATQVGSQPISEGSGPSGNDPPILQDKDAKVPPAVPSIPHVQKKTIVAIRPSTSGSSREQSDDDEAEGETYMIDSTDPTDVKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRGENSTLVKRLTDVNQKYTDSAVDNRVLKADVETLRAKVKMAEETVKRVTGLNPLFHVMPDMSS--MPAFDGSPSDNLADAAVPVQDDPHHHFYQPTSINPMPCHDMRVSNGLGEISSIENVQPNN-AAVVGGNKMGQTAPPLHRVASLEHLQKRIRGG 399
BLAST of g.arboreum_cottongen_reftransV1_0015984 vs. ExPASy TrEMBL
Match: A0A0B2PBF0_GLYSO (Light-inducible protein CPRF2 OS=Glycine soja GN=glysoja_013839 PE=4 SV=1) HSP 1 Score: 340.887 bits (873), Expect = 2.536e-111 Identity = 194/311 (62.38%), Postives = 232/311 (74.60%), Query Frame = 3 Query: 3 FLKNKLNLACAAVAMSRASFVKPQDSAVRADSGSQASDTPQSGSIATSKGA----------GDKDGNAQSGFPSVVNGQKKIGAQVRPSTSGSSREMSEDDEVEGENETMENMDPADAKRVRRMLXXXXXXXXXXXXKQAHLTELETQVSQLRVENATLLKRLTDISQKYNESAVDNRVLKADVETLRAKVKMAEDSVKRITGLSPVFHASPEISTAGMSSFDG-SPSDTSTEAAVSVQDGPKHPLYQAAANKPISTHDLRTNNALADISSVENIQPKSEVSSVSGNKIGRTPSMQRVASLEHLQKRICGG 902 FLK+KLNLACAAVAM+R S K QD + ++ GSQ ++ S TSKG+ DKD N G PS+ QKK +RPSTSGSSRE S+D+++EGE +N DPAD KRVRRMLSNRESARRSRRRKQAHLT+LETQVSQLR EN+TLLKRLTD+SQKY++SAVDNRVLKADVETLR KVKMAE++VKRITGL+P+ HA +IS+ G+ SFDG SPSDTS +AAV VQD P H YQ + PI +HD NN L ISS+EN+Q + V + GNK+G+T S+QRVASLEHLQ+RI GG Sbjct: 101 FLKSKLNLACAAVAMTRGSLAKSQDPSPFSEGGSQPTNPSLVESQTTSKGSIPSENDPSKLQDKDTNVPVGIPSIPAMQKKPAVAIRPSTSGSSREQSDDEDIEGETSMNDNTDPADVKRVRRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENSTLLKRLTDVSQKYSDSAVDNRVLKADVETLRTKVKMAEETVKRITGLNPLLHAMSDISSLGLPSFDGRSPSDTSADAAVPVQDDPHHHFYQPTSTNPIPSHDPIVNNGLGGISSIENVQQNAAV-VLGGNKMGQTASLQRVASLEHLQERIRGG 410
BLAST of g.arboreum_cottongen_reftransV1_0015984 vs. ExPASy TrEMBL
Match: A0A0D2S5L8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G246700 PE=4 SV=1) HSP 1 Score: 330.872 bits (847), Expect = 7.468e-109 Identity = 179/186 (96.24%), Postives = 181/186 (97.31%), Query Frame = 3 Query: 3 FLKNKLNLACAAVAMSRASFVKPQDSAVRADSGSQASDTPQSGSIATSKGAGDKDGNAQSGFPSVVNGQKKIGAQVRPSTSGSSREMSEDDEVEGENETMENMDPADAKRVRRMLXXXXXXXXXXXXKQAHLTELETQVSQLRVENATLLKRLTDISQKYNESAVDNRVLKADVETLRAKVKMAED 560 FLKNKLNLACAAVAMSRASFVKPQDSAVRADSGSQASDTPQS SIATSKGAGDK+GNA SGFPSVVNGQKKIGAQVRPSTSGSSREMSEDDEVEGENETMENMDPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENATLLKRLTDISQKYNESAVDNRVLKADVETLRAKV + D Sbjct: 102 FLKNKLNLACAAVAMSRASFVKPQDSAVRADSGSQASDTPQSVSIATSKGAGDKNGNALSGFPSVVNGQKKIGAQVRPSTSGSSREMSEDDEVEGENETMENMDPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENATLLKRLTDISQKYNESAVDNRVLKADVETLRAKVNESFD 287
BLAST of g.arboreum_cottongen_reftransV1_0015984 vs. ExPASy TrEMBL
Match: L7Y8B6_CAMSI (BZIP transcription factor family protein 6 OS=Camellia sinensis PE=2 SV=1) HSP 1 Score: 333.569 bits (854), Expect = 3.875e-108 Identity = 202/310 (65.16%), Postives = 231/310 (74.52%), Query Frame = 3 Query: 3 FLKNKLNLACAAVAMSRASFVKPQDSAVRADSGSQASDTPQSGSIATSKGAG-------DKDGNAQSGFPSVVNGQKKIGAQVRPSTSGSSREMSEDDEVEGENETMENMDPADAKRVRRMLXXXXXXXXXXXXKQAHLTELETQVSQLRVENATLLKRLTDISQKYNESAVDNRVLKADVETLRAKVKMAEDSVKRITGLSPVFHASPEISTAGMSSFDGSPSDTSTEAAVSVQDGP-KHPLYQAAANKPISTHDLRTNNALADISSVENIQPKSEVSSVSGNKIGRTPSMQRVASLEHLQKRICGGIS 908 FLK++LNLACAAVA++RASFVK Q+S + AD+GSQAS T Q G A +G+G DKD G PS+ +KK QV+ +TSGSSRE S+DDE EGE ET N DP DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVEN++LLKRL+DISQKYNESAVDNRVLKADVETLRAKVKMAE++VKR+TGL+P+F A ++ST M SF SPSDTS +AAV VQD P + YQ+AAN + H R N DI S EN Q GNK+GRT SMQRVASLEHLQKRI G S Sbjct: 135 FLKSRLNLACAAVALTRASFVKSQESPIVADNGSQASSTGQLGMQALGEGSGYGLPKGQDKDVIGPLGIPSLPAMEKKSVVQVKSTTSGSSREQSDDDEAEGETET-NNTDPTDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLSDISQKYNESAVDNRVLKADVETLRAKVKMAEETVKRVTGLNPLFQAMSDMSTMSMPSFADSPSDTSADAAVPVQDVPNQQHFYQSAAN---NNHMSRIENDFVDIPSAENEQ------QSPGNKMGRTASMQRVASLEHLQKRIRGDAS 434
BLAST of g.arboreum_cottongen_reftransV1_0015984 vs. ExPASy TrEMBL
Match: I1NIQ1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 330.487 bits (846), Expect = 1.780e-107 Identity = 189/304 (62.17%), Postives = 226/304 (74.34%), Query Frame = 3 Query: 3 FLKNKLNLACAAVAMSRASFVKPQDSAVRADSGSQASDTPQSGSIATSKGA----------GDKDGNAQSGFPSVVNGQKKIGAQVRPSTSGSSREMSEDDEVEGENETMENMDPADAKRVRRMLXXXXXXXXXXXXKQAHLTELETQVSQLRVENATLLKRLTDISQKYNESAVDNRVLKADVETLRAKVKMAEDSVKRITGLSPVFHASPEISTAGMSSFDG-SPSDTSTEAAVSVQDGPKHPLYQAAANKPISTHDLRTNNALADISSVENIQPKSEVSSVSGNKIGRTPSMQRVASLEHL 881 FLK+KLNLACAAVAM+R S K QD + ++ GSQ ++ S TSKG+ DKD N G PS+ QKK +RPSTSGSSRE S+D+++EGE +N DPAD KRVRRMLSNRESARRSRRRKQAHLT+LETQVSQLR EN+TLLKRLTD+SQKY++SAVDNRVLKADVETLR KVKMAE++VKRITGL+P+ HA +IS+ G+ SFDG SPSDTS +AAV VQD P H YQ + PI +HD NN L ISS+EN+Q + V + GNK+G+T S+QRVASLEHL Sbjct: 101 FLKSKLNLACAAVAMTRGSLAKSQDPSPFSEGGSQPTNPSLVESQTTSKGSIPSENDPSKLQDKDTNVPVGIPSIPAMQKKPAVAIRPSTSGSSREQSDDEDIEGETSMNDNTDPADVKRVRRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENSTLLKRLTDVSQKYSDSAVDNRVLKADVETLRTKVKMAEETVKRITGLNPLLHAMSDISSLGLPSFDGRSPSDTSADAAVPVQDDPHHHFYQPTSTNPIPSHDPIVNNGLGGISSIENVQQNAAV-VLGGNKMGQTASLQRVASLEHL 403
BLAST of g.arboreum_cottongen_reftransV1_0015984 vs. ExPASy Swiss-Prot
Match: CPRF2_PETCR (Light-inducible protein CPRF2 OS=Petroselinum crispum GN=CPRF2 PE=2 SV=2) HSP 1 Score: 308.916 bits (790), Expect = 4.374e-101 Identity = 191/311 (61.41%), Postives = 233/311 (74.92%), Query Frame = 3 Query: 3 FLKNKLNLACAAVAMSRASFVKPQDSAVRADSGSQASDTPQSGSIATSKGAG-------DKDGNAQSGFPSVVNGQKKIGAQVRPSTSGSSREMSEDD-EVEGENETMENMDPADAKRVRRMLXXXXXXXXXXXXKQAHLTELETQVSQLRVENATLLKRLTDISQKYNESAVDNRVLKADVETLRAKVKMAEDSVKRITGLSPVFHA-SPEISTAGMSSFDGSPSDTSTEAAVSVQDGPKHPLYQAAANKPISTHDLRTNNALADISSVENIQPKSEVSSVSGNKIGRTPSMQRVASLEHLQKRICGGIS 908 +LK++L+LACAAVA++RAS +KPQDSA D+GSQAS+T Q S KG+G DK+ A + P + QKK QV+ +TSGSSR+ S+DD E+EGE ET N DP+DAKRVRRMLSNRESARRSRRRKQAH+TELETQVSQLRVEN++LLKRLTDISQ+YN++AVDNRVLKAD+ET+RAKVKMAE++VKR+TGL+P+F + S EIST GM SF GSPSDTS + + QDG K YQ A + D + N L + V+N+Q S V GNK+ RT SMQRVASLEHLQKRI GG+S Sbjct: 84 YLKSRLDLACAAVALTRASSLKPQDSAALLDNGSQASNTSQLVSQVPPKGSGHDLSKEEDKEALAATATPLLPALQKKSAIQVKSTTSGSSRDHSDDDDELEGETETTRNGDPSDAKRVRRMLSNRESARRSRRRKQAHMTELETQVSQLRVENSSLLKRLTDISQRYNDAAVDNRVLKADIETMRAKVKMAEETVKRVTGLNPMFQSMSSEISTIGMQSFSGSPSDTSAD---TTQDGSKQHFYQPAPTSHMPAQDQKIQNGLLQVPPVDNLQQHSASGPVEGNKMERTSSMQRVASLEHLQKRIRGGVS 391
BLAST of g.arboreum_cottongen_reftransV1_0015984 vs. ExPASy Swiss-Prot
Match: BZP63_ARATH (Basic leucine zipper 63 OS=Arabidopsis thaliana GN=BZIP63 PE=1 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 1.068e-61 Identity = 142/298 (47.65%), Postives = 192/298 (64.43%), Query Frame = 3 Query: 3 FLKNKLNLACAAVAMSRASFVKPQDSAVRADSGSQASDTPQSGSIATSKGAGDKDGNAQSGFPSVVNGQKKIGAQVRPSTSGSSREMSEDDEVEGENETMENMDPADAKRVRRMLXXXXXXXXXXXXKQAHLTELETQVSQLRVENATLLKRLTDISQKYNESAVDNRVLKADVETLRAKVKMAEDSVKRITGLSPVFHASPEI-STAGMSSFDGSPSDTSTEAAVSVQDGPKHPLYQAAANKPISTHDLRTNNALADISSVENIQPKSEVSSVSGNKIGRTPSMQRVASLEHLQKRI 893 FLK+KLNLACAAVAM R +F+KPQD++ R+D+G ++ + S+A+SK A S + TSGS E+S D+E E + ET NM+P + KRV+RMLSNRESARRSRRRKQAHL+ELETQVSQLRVEN+ L+K LTD++Q +N+++V+NRVLKA++ETLRAKVKMAE++VKR+TG +P+FH P+I ST + PS+TS N P +T + +++ E I ++ ++ G K+ RT SM+RV SLEHLQKRI Sbjct: 73 FLKSKLNLACAAVAMKRGTFIKPQDTSGRSDNG--GANESEQASLASSK--------ATPMMSSAI-------------TSGS--ELSGDEE-EADGET--NMNPTNVKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSKLMKGLTDVTQTFNDASVENRVLKANIETLRAKVKMAEETVKRLTGFNPMFHNMPQIVSTVSL------PSETS--------------------NSPDTTS--------SQVTTPEIISSGNKGKALIGCKMNRTASMRRVESLEHLQKRI 308
BLAST of g.arboreum_cottongen_reftransV1_0015984 vs. ExPASy Swiss-Prot
Match: BZP25_ARATH (Basic leucine zipper 25 OS=Arabidopsis thaliana GN=BZIP25 PE=1 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 2.885e-35 Identity = 107/223 (47.98%), Postives = 145/223 (65.02%), Query Frame = 3 Query: 3 FLKNKLNLACAAVAMSRASFVKPQDSAVRADSGSQASDTPQSGSIA--TSKGAGDKDGNAQSGFPSVVNGQKKIGAQVRPSTSGSSREMSEDDEVEGENETMENMDPADAKRVRRMLXXXXXXXXXXXXKQAHLTELETQVSQLRVENATLLKRLTDISQKYNESAVDNRVLKADVETLRAKVKMAEDSVKRITGLSPVFHASPEISTAGMSSFDGSPSDTST 665 LK+KL LACAAVA R VKP+DS+ A + QA GSI TS GA + F + QKK R TS SSR+ S+DD+++G+ + + P D KR RRMLSNRESARRSRRRKQ + E +TQV QLR E++TL+ RL+D++ KY+ +AVDNR+L+AD+ETLR KVKMAE++VKR+TG++P+ + P + F +PS +S+ Sbjct: 137 ILKSKLELACAAVA-RRVGTVKPEDSSASASNQKQAQ-----GSIVAQTSPGA------SSVRFSPTTSTQKKPDVPAR-QTSISSRDDSDDDDLDGDADNGD---PTDVKRARRMLSNRESARRSRRRKQEQMNEFDTQVGQLRAEHSTLINRLSDMNHKYDAAAVDNRILRADIETLRTKVKMAEETVKRVTGVNPLHWSRPNMGIP----FSNTPSASSS 339
BLAST of g.arboreum_cottongen_reftransV1_0015984 vs. ExPASy Swiss-Prot
Match: BZP10_ARATH (Basic leucine zipper 10 OS=Arabidopsis thaliana GN=BZIP10 PE=1 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 9.698e-35 Identity = 98/197 (49.75%), Postives = 134/197 (68.02%), Query Frame = 3 Query: 6 LKNKLNLACAAVAMSRASFVKPQDSAVRADSGSQASDTPQSGSIATSKGAGDKDGNAQSGFPSVVNGQKKIGAQVRPSTSGSSREMSEDDEVEGENETMENMDPADAKRVRRMLXXXXXXXXXXXXKQAHLTELETQVSQLRVENATLLKRLTDISQKYNESAVDNRVLKADVETLRAKVKMAEDSVKRITGLSPVF 596 LKNKL CA V R VKP+DS ++ Q P S T G S P+ V KK G ++ TSGSSRE S+D++++ ENET ++ P D K+ RRMLSNRESARRSRRRKQ ++LETQV+ L+ E+++LLK+L++++ KY+E+AV NR+LKAD+ETLRAKVKMAE++VKR+TG++P+ Sbjct: 122 LKNKLETECATVVSLRVGSVKPEDSTSSPETQLQ----PVQSSPLTQGELG-----VTSSLPAEV---KKTGVSMKQVTSGSSREYSDDEDLDEENETTGSLKPEDVKKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEHSSLLKQLSNMNHKYDEAAVGNRILKADIETLRAKVKMAEETVKRVTGMNPML 306
BLAST of g.arboreum_cottongen_reftransV1_0015984 vs. ExPASy Swiss-Prot
Match: OP2_MAIZE (Regulatory protein opaque-2 OS=Zea mays GN=O2 PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.139e-22 Identity = 90/192 (46.88%), Postives = 118/192 (61.46%), Query Frame = 3 Query: 3 FLKNKLNLACAAVAMSRASFVKPQDSAVRADSGSQASDTPQSGSIATSKGAGDKDGNAQSGFPSVVNGQKKIGAQVRPSTSGSSREMSEDDE-VEGENETMENMDPADAKRVRRMLXXXXXXXXXXXXKQAHLTELETQVSQLRVENATLLKRLTDISQKYNESAVDNRVLKADVETLRAKVKMAEDSVKRI 575 L+ KL A M RA S V +D SQ S+ GS + +K N + P N + G VR +TS SSR+ S DE ++GE E + P + +RVR+ SNRESARRSR RK AHL ELE QV+QL+ EN+ LL+R+ ++QKYN++ VDNRVL+AD+ETLRAKVKM EDS+KR+ Sbjct: 126 ILRRKLEEDLEAFKMWRAD-----SSVVTSDQRSQGSNNHTGGSSIRNNPVQNKLMNGED--PINNNHAQTAGLGVRLATSSSSRDPSPSDEDMDGEVEILGFKMPTE-ERVRKKESNRESARRSRYRKAAHLKELEDQVAQLKAENSCLLRRIAALNQKYNDANVDNRVLRADMETLRAKVKMGEDSLKRV 309
BLAST of g.arboreum_cottongen_reftransV1_0015984 vs. ExPASy Swiss-Prot
Match: BZIP9_ARATH (Basic leucine zipper 9 OS=Arabidopsis thaliana GN=BZIP9 PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.380e-22 Identity = 74/149 (49.66%), Postives = 96/149 (64.43%), Query Frame = 3 Query: 228 VRPSTSGSSREMSEDDEVEGE--NETMENMDPADAKRVRRMLXXXXXXXXXXXXKQAHLTELETQVSQLRVENATLLKRLTDISQKYNESAVDNRVLKADVETLRAKVKMAEDSVKR-----------ITGLSPVFHASPEISTAGMSS 635 VR +TSGSS S+D++ E E M N DP D KR+RRM SNRESA+RSRRRKQ +L +LETQV L+ +N+TL K+L D +Q++ + +NRVLK+DVETLR KVK+AED V R T LSP H+ + G +S Sbjct: 88 VRRTTSGSSHVNSDDEDAETEAGQSEMTN-DPNDLKRIRRMNSNRESAKRSRRRKQEYLVDLETQVDSLKGDNSTLYKQLIDATQQFRSAGTNNRVLKSDVETLRVKVKLAEDLVARGSLTSSLNQLLQTHLSPPSHSISSLHYTGNTS 235 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015984 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0015984 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 6
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0015984 ID=g.arboreum_cottongen_reftransV1_0015984; Name=g.arboreum_cottongen_reftransV1_0015984; organism=Gossypium arboreum; type=contig; length=908bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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