g.arboreum_cottongen_reftransV1_0001670, g.arboreum_cottongen_reftransV1_0001670 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001670
Unique Nameg.arboreum_cottongen_reftransV1_0001670
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr7chromosomeg.arboreum_cottongen_reftransV1_0001670:1..1129 .
Chr7:14098541..14100197 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: A0A0B0PIB6_GOSAR (Tyrosyl-DNA phosphodiesterase 2 OS=Gossypium arboreum GN=F383_07699 PE=4 SV=1)

HSP 1 Score: 632.484 bits (1630), Expect = 0.000e+0
Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = -1 
Query:  194 RKIREPNLGNEDCIELGGFRGIKASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1129
            RKIREPNLGNEDCIELGGFRGIKASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRKEKKLLELPVLPSDHYGLLLTISSQ
Sbjct:   94 RKIREPNLGNEDCIELGGFRGIKASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRKEKKLLELPVLPSDHYGLLLTISSQ 405
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BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: A0A0D2SYV2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G252100 PE=4 SV=1)

HSP 1 Score: 619.002 bits (1595), Expect = 0.000e+0
Identity = 305/312 (97.76%), Postives = 309/312 (99.04%), Query Frame = -1 
Query:  194 RKIREPNLGNEDCIELGGFRGIKASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1129
            RKIREPNLGNEDCIELGGFRGIKASNKAVQIE S+SGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISD+TASLRAYFCIQLSK PVKSFRREPFDNSIMGRELCMTEVE+SGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILEN PNVIFGGDMNWDDKLDG+FPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRKEKKLLELPVLPSDHYGLLLTISSQ
Sbjct:  135 RKIREPNLGNEDCIELGGFRGIKASNKAVQIEDSHSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDNTASLRAYFCIQLSKLPVKSFRREPFDNSIMGRELCMTEVEVSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENNPNVIFGGDMNWDDKLDGRFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRKEKKLLELPVLPSDHYGLLLTISSQ 446
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: A0A061GNQ8_THECC (Endonuclease/exonuclease/phosphatase family protein OS=Theobroma cacao GN=TCM_030246 PE=4 SV=1)

HSP 1 Score: 503.056 bits (1294), Expect = 3.109e-173
Identity = 249/313 (79.55%), Postives = 278/313 (88.82%), Query Frame = -1 
Query:  194 RKIREPNLGNEDCIELGGFRGIKASNKAVQIE-GSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1129
            RKIR P++GNEDC+E   FRGIKASNKAV +E  SN G++++SLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPD+ICFQEVTP IYDIFR SNWW  YRCS+S D A+ R YFC+QLSK PVKSF  +PF NS+MGRELCMTEVE+ GG++ LVVAT+HLESP PAPPKWDQM+SKERVEQAK AINIL+N P+VIFGGDMNWDDKLDGQFPL DGWIDAW ELR AEDGWTYDTKSNQMLS NRTL+KRLDRF+C LN FKV  ++MIG+E +PGLSY KEKNVRKEKKLLELPVLPSDHYGLLLTIS++
Sbjct:  136 RKIRYPDVGNEDCLESSSFRGIKASNKAVAVEEDSNLGAVESSLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDLICFQEVTPNIYDIFRQSNWWNVYRCSVSVDMANSRGYFCMQLSKRPVKSFSCKPFGNSVMGRELCMTEVEVFGGKS-LVVATSHLESPSPAPPKWDQMFSKERVEQAKEAINILKNNPDVIFGGDMNWDDKLDGQFPLPDGWIDAWRELRSAEDGWTYDTKSNQMLSGNRTLQKRLDRFVCNLNDFKVSGIDMIGIEALPGLSYIKEKNVRKEKKLLELPVLPSDHYGLLLTISTK 447
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: A0A067GEZ3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012811mg PE=4 SV=1)

HSP 1 Score: 430.254 bits (1105), Expect = 1.260e-144
Identity = 215/321 (66.98%), Postives = 247/321 (76.95%), Query Frame = -1 
Query:  194 RKIREPNLGNEDCIELGGFRGIKASNKAV---------QIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1129
            RKIR+     +DC   G F G + +N              + S SG++  SLKILSYNVWFREDLE+H RMK IGDLIQLHSPDIICFQE+TP IYDI   S+WWKGYRCS+ ++ A  R YFC+QLSK   KSF  EPF NSIMGRELC+ EVE+ G +  LVVAT+HLESPCP PP WDQM+SKERVEQAK AIN+L+  PNVIF GDMNWDDKLDG+FPL DGW+DAW ELRP E+GWTYDTKSN+MLS NRTL+KRLDRF+C L  FK+  ++MIGVE IPGL Y KEK VRKE + LELPVLPSDHYGLLLTIS+ 
Sbjct:  142 RKIRD-----QDCD--GDFDGFRVTNSVSIKDDTTSGPSADNSESGAVSGSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGYRCSVPNEMADSRGYFCMQLSKLQAKSFTCEPFRNSIMGRELCVAEVEVQG-KKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKKNPNVIFCGDMNWDDKLDGKFPLPDGWVDAWTELRPGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRDFKIIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISNN 454
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: A0A067GF93_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012811mg PE=4 SV=1)

HSP 1 Score: 427.172 bits (1097), Expect = 8.076e-144
Identity = 205/281 (72.95%), Postives = 233/281 (82.92%), Query Frame = -1 
Query:  194 EGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1036
            + S SG++  SLKILSYNVWFREDLE+H RMK IGDLIQLHSPDIICFQE+TP IYDI   S+WWKGYRCS+ ++ A  R YFC+QLSK   KSF  EPF NSIMGRELC+ EVE+ G +  LVVAT+HLESPCP PP WDQM+SKERVEQAK AIN+L+  PNVIF GDMNWDDKLDG+FPL DGW+DAW ELRP E+GWTYDTKSN+MLS NRTL+KRLDRF+C L  FK+  ++MIGVE IPGL Y KEK VRKE + LELPVLPSDHYGLLLTIS+ 
Sbjct:  149 DNSESGAVSGSLKILSYNVWFREDLEMHPRMKTIGDLIQLHSPDIICFQEITPNIYDILCKSSWWKGYRCSVPNEMADSRGYFCMQLSKLQAKSFTCEPFRNSIMGRELCVAEVEVQG-KKPLVVATSHLESPCPGPPTWDQMFSKERVEQAKEAINLLKKNPNVIFCGDMNWDDKLDGKFPLPDGWVDAWTELRPGENGWTYDTKSNKMLSGNRTLQKRLDRFICSLRDFKIIRIDMIGVEAIPGLLYVKEKKVRKEMQKLELPVLPSDHYGLLLTISNN 428
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BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: I1KNE7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 426.017 bits (1094), Expect = 2.883e-143
Identity = 199/291 (68.38%), Postives = 240/291 (82.47%), Query Frame = -1 
Query:  194 IKASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1066
            +K S+KA  I G  +     + KILSYNVWFREDLE+HKRMKAIGDL+Q HSPD ICFQEVTP IYDIF+ S WW GYRCS+S +    R YFC+ LSK PVKSF ++PF NSIMGRELC+ EVE + G T+LV+AT+HLESP P PPKWDQM+SKERV QA  AIN+L+ +PNV+FGGDMNW+D LDGQ+PL DGW+DAW++LRP E+GWTYDTK+NQML+ NRT++KRLDRF+C+L  FK+ +V+MIG+E IPG+SY KEK VRKE K L LP+LPSDHYGLLLTISS+
Sbjct:  143 VKPSDKATDITGDENIDSGKAFKILSYNVWFREDLELHKRMKAIGDLVQFHSPDFICFQEVTPNIYDIFKRSTWWSGYRCSVSSEMDYSRPYFCMVLSKLPVKSFSKKPFSNSIMGRELCIAEVEAARG-TSLVIATSHLESPSPGPPKWDQMFSKERVVQANEAINLLKKQPNVVFGGDMNWNDNLDGQYPLQDGWVDAWSQLRPNENGWTYDTKANQMLTGNRTVQKRLDRFICRLTDFKITSVDMIGMEAIPGVSYNKEKKVRKEIKQLVLPILPSDHYGLLLTISSK 432
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: A0A0B2RMI0_GLYSO (Tyrosyl-DNA phosphodiesterase 2 OS=Glycine soja GN=glysoja_039517 PE=4 SV=1)

HSP 1 Score: 424.861 bits (1091), Expect = 3.077e-143
Identity = 199/291 (68.38%), Postives = 240/291 (82.47%), Query Frame = -1 
Query:  194 IKASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1066
            +K S+KA  I G  +     + KILSYNVWFREDLE+HKRMKAIGDL+Q HSPD ICFQEVTP IYDIF+ S WW GYRCS+S +    R YFC+ LSK PVKSF ++PF NSIMGRELC+ EVE + G T+LV+AT+HLESP P PPKWDQM+SKERV QA  AIN+L+ +PNV+FGGDMNW+D LDGQ+PL DGW+DAW++LRP E+GWTYDTK+NQML+ NRT++KRLDRF+C+L  FK+ +V+MIG+E IPG+SY KEK VRKE K L LP+LPSDHYGLLLTISS+
Sbjct:  114 VKPSDKATDITGDENIDSGKAFKILSYNVWFREDLELHKRMKAIGDLVQFHSPDFICFQEVTPNIYDIFKRSTWWSGYRCSVSSEMDYSRPYFCMVLSKLPVKSFSKKPFSNSIMGRELCIAEVEAARG-TSLVIATSHLESPSPGPPKWDQMFSKERVVQANEAINLLKKQPNVVFGGDMNWNDNLDGQYPLQDGWVDAWSQLRPNENGWTYDTKANQMLTGNRTVQKRLDRFICRLTDFKITSVDMIGMEAIPGVSYNKEKKVRKEIKQLVLPILPSDHYGLLLTISSK 403
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: B9NBH8_POPTR (Endonuclease/exonuclease/phosphatase family protein OS=Populus trichocarpa GN=POPTR_0004s01100g PE=4 SV=1)

HSP 1 Score: 425.246 bits (1092), Expect = 3.801e-143
Identity = 209/299 (69.90%), Postives = 250/299 (83.61%), Query Frame = -1 
Query:  200 IELGGFRGIKASNKAVQI--EGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTIS 1090
            ++LG F+G +ASNK V +  E +NS ++  S KILSYNVWFREDLE+H+RMKA+G+LIQLHSPD+IC QEV P IYDIF+ S+WWK Y+CS+S + AS R YFC+QLSK PVKSF  +PF NSIMGRELC+ E+E+ G + +LVVAT+HLESPCPAPPKWDQM+SKERV+QAK AIN+L+   NVIF GDMNWDDKLDGQFP  DGW+DAW EL+P ++GWTYDTKSNQMLS NR L+KRLDRF+C L  FK+  ++MIG + IPGLSY KEK VRKE K+LELPVLPSDHYGLLLTIS
Sbjct:  123 VKLGAFQGARASNKGVAVLTEDTNSAAVLGSFKILSYNVWFREDLEMHRRMKALGELIQLHSPDVICLQEVIPDIYDIFQRSSWWKAYQCSVSSEIASSRGYFCMQLSKLPVKSFSTKPFMNSIMGRELCIAELEVPG-KKSLVVATSHLESPCPAPPKWDQMFSKERVDQAKEAINLLKKNSNVIFCGDMNWDDKLDGQFPFPDGWVDAWVELKPGDNGWTYDTKSNQMLSGNRALQKRLDRFICSLCDFKISKIDMIGKDAIPGLSYMKEKKVRKEVKMLELPVLPSDHYGLLLTIS 420
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: I1MR47_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 421.779 bits (1083), Expect = 4.557e-142
Identity = 204/305 (66.89%), Postives = 245/305 (80.33%), Query Frame = -1 
Query:  194 LGNEDCIELGGFRGIKASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1108
            + ++D  E+  F+ +K SN    I G  +     + KILSYNVWFREDLE+HKRMKAIGDL+QLHSPD ICFQEVTP IYDIF+GS WW  Y CS+S + A  R YFC+ LSK PVKSF  +PF NSIMGRELC+ EVE + G+  LV+AT+HLESPCPAPPKWDQMYSKERV QA  AIN+L+ +P+V+FGGDMNW+D+ DGQ+PL DGW+DAW++LRP E GWTYDTKSNQML+ NRTL+KRLDRF+C+   FK+ +V+MIG+E IPG+SY KEK VRKE K L LPVLPSDHYGLLLTISS+
Sbjct:  104 IDDDDSSEVINFK-VKPSN----ITGDENIDTGKAFKILSYNVWFREDLELHKRMKAIGDLVQLHSPDFICFQEVTPNIYDIFKGSAWWSVYCCSVSSEMAYSRPYFCMLLSKLPVKSFSNKPFSNSIMGRELCIAEVEAASGKP-LVIATSHLESPCPAPPKWDQMYSKERVVQANEAINLLKKQPSVVFGGDMNWNDQQDGQYPLQDGWVDAWSQLRPNESGWTYDTKSNQMLTGNRTLQKRLDRFICQFTDFKITSVDMIGMEAIPGVSYNKEKKVRKEIKQLVLPVLPSDHYGLLLTISSK 402
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Match: A0A0B2P2A3_GLYSO (Tyrosyl-DNA phosphodiesterase 2 OS=Glycine soja GN=glysoja_004512 PE=4 SV=1)

HSP 1 Score: 421.779 bits (1083), Expect = 4.557e-142
Identity = 204/305 (66.89%), Postives = 245/305 (80.33%), Query Frame = -1 
Query:  194 LGNEDCIELGGFRGIKASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPNVIFGGDMNWDDKLDGQFPLTDGWIDAWNELRPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISSQ 1108
            + ++D  E+  F+ +K SN    I G  +     + KILSYNVWFREDLE+HKRMKAIGDL+QLHSPD ICFQEVTP IYDIF+GS WW  Y CS+S + A  R YFC+ LSK PVKSF  +PF NSIMGRELC+ EVE + G+  LV+AT+HLESPCPAPPKWDQMYSKERV QA  AIN+L+ +P+V+FGGDMNW+D+ DGQ+PL DGW+DAW++LRP E GWTYDTKSNQML+ NRTL+KRLDRF+C+   FK+ +V+MIG+E IPG+SY KEK VRKE K L LPVLPSDHYGLLLTISS+
Sbjct:  104 IDDDDSSEVINFK-VKPSN----ITGDENIDTGKAFKILSYNVWFREDLELHKRMKAIGDLVQLHSPDFICFQEVTPNIYDIFKGSAWWSVYCCSVSSEMAYSRPYFCMLLSKLPVKSFSNKPFSNSIMGRELCIAEVEAASGKP-LVIATSHLESPCPAPPKWDQMYSKERVVQANEAINLLKKQPSVVFGGDMNWNDQQDGQYPLQDGWVDAWSQLRPNESGWTYDTKSNQMLTGNRTLQKRLDRFICQFTDFKITSVDMIGMEAIPGVSYNKEKKVRKEIKQLVLPVLPSDHYGLLLTISSK 402
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_XENTR (Tyrosyl-DNA phosphodiesterase 2 OS=Xenopus tropicalis GN=tdp2 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.113e-18
Identity = 86/310 (27.74%), Postives = 144/310 (46.45%), Query Frame = -1 
Query:  212 GNEDCIELGGFRGIKASNKAVQIEGSNSGSIK----ASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKP---NVIFGGDMNWDDKLDGQF-PLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCAVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLL 1105
             ++ CI+L G   +   ++A     SNS ++K    +    L++N+   ++  V +R + +   + L+SPD++  QEV P  Y+      + K    S +  T +   YF  + L K  VK   +E  P+ +++M R L +  V +SG    L+  T+HLES         + +SKER++Q  + +  + + P    VIFGGD N  D+   +   + +  +D W+ L +P    +T+DTK N+ L A    R R DR   +            G + IP   Y          + L+    PSDH+GLL
Sbjct:   90 ASDSCIDLTGDDLVVTKSEATT---SNSSTVKQEDESHFSFLTWNIDGLDESNVAERARGVCSYLALYSPDVVFLQEVIPPYYE------YLKKRAVSYTIITGNEDEYFTAMMLKKSRVKLISQEIVPYPSTVMMRNLLVANVNISGNSICLM--TSHLEST--------KDHSKERLKQLDIVLKKMMDAPPLATVIFGGDTNLRDQEVAKIGGMPNNILDVWDFLGKPEHCRYTWDTKVNKNLRAPYICRLRFDRIFFR--------ASQEGSQVIPQSLYL------AGTEKLDCGRFPSDHWGLL 366
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_XENLA (Tyrosyl-DNA phosphodiesterase 2 OS=Xenopus laevis GN=tdp2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.487e-17
Identity = 87/316 (27.53%), Postives = 145/316 (45.89%), Query Frame = -1 
Query:  212 LGNEDCIELGGFRGIKASNKAVQIEGSNSGSIK-----ASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKP---NVIFGGDMNWDDKLDGQF-PLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDRFL--CKLNGFKVCA--VEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLL 1108
            + ++ CI+L     +   ++AV    SNS ++K     +    L++N+   ++  V +R +A+   + L++PD++  QEV P   +      + K    S    T +   YF  + L K  VK   +E  P+ +++M R L +  V +SG    L+  T+HLES         + +SKER++Q    +  + + P    VIFGGD N  D+   +   L +  +D W  L +P    +T+DTK N  L A  T R R DR L    + G +V    + ++G E +    +                  PSDH+GLL
Sbjct:   86 VTSDACIDLTSDDLVATKSEAVT---SNSSTVKQQEDESHFTFLTWNIDGLDESNVAERARAVCSCLALYTPDVVFLQEVIPPYCE------YLKKRAVSYKIITGNEDEYFTAMMLKKSRVKLISQEIVPYPSTLMMRNLLVANVNISGNSICLM--TSHLEST--------KDHSKERLKQLDTVLKKMMDAPPSATVIFGGDTNLRDQEVAKIGGLPNTILDVWEFLGKPEHCRYTWDTKLNNNLRACYTSRLRFDRILYRASMEGSQVIPQFLNLVGTEKLDCGRF------------------PSDHWGLL 364
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_MOUSE (Tyrosyl-DNA phosphodiesterase 2 OS=Mus musculus GN=Tdp2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.952e-17
Identity = 85/302 (28.15%), Postives = 132/302 (43.71%), Query Frame = -1 
Query:  200 SNKAVQIEGSNSGSIKASLKILSYNVWFREDLE---VHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPN---VIFGGDMNWDD----KLDGQFPLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVC--AVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTIS 1057
            +N    +E S SG+       +S+  W  + L+   + +R + +   + L+SPD++  QEV P          + K    S +  T +   YF  I L K  VK   +E  PF N+ M R L    V L G E  L+  T+HLES         + +S ER+ Q K  +  ++  P+   VIF GD N  D    K  G   L D   DAW  L +P    +T+DTK+N  L      + R DR   +     +   +++++G+E +    +                  PSDH+GLL T++
Sbjct:  103 ANDTTILEASPSGTPLEDSSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPY------CAYLKKRAASYTIITGNEEGYFTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLM--TSHLES--------TREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGG---LPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRF------------------PSDHWGLLCTLN 367
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_BOVIN (Tyrosyl-DNA phosphodiesterase 2 OS=Bos taurus GN=TDP2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.587e-15
Identity = 79/280 (28.21%), Postives = 125/280 (44.64%), Query Frame = -1 
Query:  203 ILSYNVWFREDLEVH---KRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKP---NVIFGGDMNW-DDKLDGQFPLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDR--FLCKLNGFKVC--AVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTI 997
            + S+  W  + L+++   +R + +   + L+SPD+I  QEV P  Y       + K    S    T     YF  I L K  VK   +E  PF N+ M R L    V +SG E  L + T+HLES         + ++KER+ Q K+ +  ++  P    VIF GD N  D ++     L +  +D W  L +P    +T+DT+ N  L      + R DR  F     G  +   +++++G+E +    +                  PSDH+GLL T+
Sbjct:  115 VFSFITWNIDGLDMNNLLERARGVCSYLTLYSPDVIFLQEVIPPYY------AYLKKKASSYKIITGREEGYFTAIMLKKSRVKFKSQEIIPFPNTQMMRNLLCVHVSVSGNE--LCLMTSHLEST--------RGHAKERMNQFKMVLEKMQEAPGSATVIFAGDTNLRDQEVTKCGGLPNNILDVWEFLGKPKHCQYTWDTQMNSNLGIAANCKLRFDRIFFRAAAEGGHIIPQSLDLLGLEKLDCGRF------------------PSDHWGLLCTL 360
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_RAT (Tyrosyl-DNA phosphodiesterase 2 OS=Rattus norvegicus GN=Tdp2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.483e-15
Identity = 86/302 (28.48%), Postives = 131/302 (43.38%), Query Frame = -1 
Query:  200 SNKAVQIEGSNSGSIKASLKILSYNVWFREDLE---VHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILE---NKPNVIFGGDMNWDD----KLDGQFPLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVC--AVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTIS 1057
            +N    +E S SG+       +S+  W  + L+   + +R + +   + L+SPD++  QEV P      R     K  R + +  T +   YF  I L K  VK   +E  PF N+ M R L    V L G E  L+  T+HLES         + +S ER+ Q K     ++   +   VIF GD N  D    K  G   L D   DAW  L +P    +T+DTK+N  L      + R DR   +     +   ++++IG+E +    +                  PSDH+GLL T++
Sbjct:   99 ANDTTILETSPSGTPLEDSSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPSYCAYLR-----KRAR-TYNIITGNEEGYFTAILLKKGRVKFKGQEIIPFPNTKMMRNLLCVNVSLGGNEFCLM--TSHLEST--------RKHSAERINQLKTVFQKMQEATDSTTVIFAGDTNLRDQEVIKCGG---LPDNVFDAWEFLGKPKHCRYTWDTKANDNLRIPAACKHRFDRIFFRAEEGHLIPQSLDLIGLERLDCGRF------------------PSDHWGLLCTLN 363
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_CHICK (Tyrosyl-DNA phosphodiesterase 2 OS=Gallus gallus GN=TDP2 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.027e-14
Identity = 86/309 (27.83%), Postives = 135/309 (43.69%), Query Frame = -1 
Query:  212 CIELGGFRGIKASNKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSKFP-VKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKP---NVIFGGDMNWDD----KLDGQFPLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDR--FLCKLNGFKVCA--VEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLL 1093
            CI+L       ASN +     S      +S  ++++N+   +   + +R + +   + L+SPD++  QEV P    I +      GY         ++  YF   L K P VK  ++E   F  + M R L +  V +SG E  L + T+HLES         + +SKER++Q ++ +N ++ +     VIFGGD N  D    KL G   L     D W  L +P    +T+DT SN  L      + R DR  F     G  +    +++IG+E +    +                  PSDH+GLL
Sbjct:   93 CIDLTA--DDTASNTSSSGADSKQQDDDSSFSLITWNIDGLDLGNLQERARGVCSYLALYSPDVVFLQEVIPPYLCILQ--RRAGGYTII----PGNVDGYFTAMLLKKPRVKVLKQEIIRFPTTSMMRNLLVVHVNISGNE--LCLMTSHLEST--------RDHSKERMKQLQIVLNKMQEESQSTTVIFGGDTNLRDSEVAKLGG---LPKNITDIWEFLGKPQHCRYTWDTSSNTNLRIESKCKLRFDRLYFRPAAEGGHIIPRNMDLIGLEKLDCGRF------------------PSDHWGLL 362
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_HUMAN (Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.489e-13
Identity = 74/271 (27.31%), Postives = 115/271 (42.44%), Query Frame = -1 
Query:  203 VHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIF--RGSNWWKGYRCSISDDTASLRAYF-CIQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKP---NVIFGGDMNWDDK-LDGQFPLTDGWIDAWNEL-RPAEDGWTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVCA---------VEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTI 958
            + +R + +   + L+SPD+I  QEV P  Y     R SN+           T     YF  I L K  VK   +E  PF ++ M R L    V +SG E  L + T+HLES         + ++ ER+ Q K+ +  ++  P    VIF GD N  D+ +     L +  +D W  L +P    +T+DT+ N  L      + R DR       F+  A         ++++G+E +    +                  PSDH+GLL  +
Sbjct:  129 LSERARGVCSYLALYSPDVIFLQEVIPPYYSYLKKRSSNY--------EIITGHEEGYFTAIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVHVNVSGNE--LCLMTSHLES--------TRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAACKLRFDRIF-----FRAAAEEGHIIPRSLDLLGLEKLDCGRF------------------PSDHWGLLCNL 358
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_DANRE (Tyrosyl-DNA phosphodiesterase 2 OS=Danio rerio GN=tdp2 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 1.187e-12
Identity = 89/325 (27.38%), Postives = 139/325 (42.77%), Query Frame = -1 
Query:  197 NEDCIELGGFR---GIKASNKAVQIE-GSNSGSIKAS-LKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPMIYDIFRGSN----WWKGYRCSISDDTASLRAYFC-IQLSKFPVKSFRRE--PFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAINILENKPN---VIFGGDMNW-DDKLDGQFPLTDGWIDAWNELRPAEDG-WTYDTKSNQMLSANRTLRKRLDRFLCKLNGFKVC------AVEMIGVEPIPGLSYTKEKNVRXXXXXXXLPVLPSDHYGLLLTISS 1102
            N DCI+L        I  ++K  Q E G+    ++ S L I+S+NV   + L +  R + +   + L++PD++  QE+ P      +       +++G     SDD      YF  I L K  VK    E   F  + M R L + +V  SG +  L + T+HLES         +  S+ER +Q +V +  ++  P    VIF GD N  D ++     L  G  D W +L   E   +T+DTK+N   +     R R DR    L   K         + +IG+E +    YT                  SDH+G+  T ++
Sbjct:   85 NADCIDLTAEEPTCSITVNSKENQAENGTAKSEVEDSKLSIISWNVDGLDTLNLADRARGLCSYLALYTPDVVFLQELIPAYVQYLKKRAVSYLFFEG-----SDD-----GYFTGIMLRKSRVKFLESEIICFPTTQMMRNLLIAQVTFSGQK--LYLMTSHLESC--------KNQSQERTKQLRVVLQKIKEAPEDAIVIFAGDTNLRDAEVANVGGLPAGVCDVWEQLGKQEHCRYTWDTKANSNKTVPYVSRCRFDRIF--LRSAKTAPPVTPDHMALIGMEKLDCGRYT------------------SDHWGIYCTFNT 369
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Match: TYDP2_CAEBR (5'-tyrosyl-DNA phosphodiesterase OS=Caenorhabditis briggsae GN=CBG18823 PE=3 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 7.989e-9
Identity = 67/238 (28.15%), Postives = 107/238 (44.96%), Query Frame = -1 
Query:  368 NKAVQIEGSNSGSIKASLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDIICFQEVTPM-IYDIFRGSNWWKGYRCSISDDTASLRAYFCIQLSK-FPVKSFRREPFDNSIMGRELCMTEVELSGGETTLVVATTHLESPCPAPPKWDQMYSKERVEQAKVAIN----ILENKPN--VIFGGDMNWDDKLDGQFPLTDGWIDAWNELR-PAEDGWTYDTKSNQMLSANRTLRKRLDR 1054
            N+AV    S++G     L ++S+N+   +   +  RMKA+  +++  +PDI+  QEV    +  I +  + +K Y  +        + Y  I +SK F V+      F NS M R L + E  + G +  LV   THLES         + +  +R+ Q    ++    I+ N P   + FGGD+N  D+     P  DG +DAW       +  WT+DT  N         + R DR
Sbjct:   80 NEAVMGPSSSAG---FELSLMSWNIDGLDGRSLATRMKAVATIVKKVNPDILFLQEVVDRDLEPIDKLQSLYKIYYSN-----KGCQYYTAILVSKMFEVEKHDVVHFQNSGMYRTLQIVEGSIGGMKVFLV--NTHLESM--------RDHRAQRMAQFSFCMDRCAEIIANNPGCFLFFGGDLNLRDEEISSIP--DGVLDAWVSAGCDTKTKWTWDTYKNDNKQGFNGAKMRFDR 297
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0PIB6_GOSAR0.000e+0100.00Tyrosyl-DNA phosphodiesterase 2 OS=Gossypium arbor... [more]
A0A0D2SYV2_GOSRA0.000e+097.76Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061GNQ8_THECC3.109e-17379.55Endonuclease/exonuclease/phosphatase family protei... [more]
A0A067GEZ3_CITSI1.260e-14466.98Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067GF93_CITSI8.076e-14472.95Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
I1KNE7_SOYBN2.883e-14368.38Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
A0A0B2RMI0_GLYSO3.077e-14368.38Tyrosyl-DNA phosphodiesterase 2 OS=Glycine soja GN... [more]
B9NBH8_POPTR3.801e-14369.90Endonuclease/exonuclease/phosphatase family protei... [more]
I1MR47_SOYBN4.557e-14266.89Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2P2A3_GLYSO4.557e-14266.89Tyrosyl-DNA phosphodiesterase 2 OS=Glycine soja GN... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0001670 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TYDP2_XENTR1.113e-1827.74Tyrosyl-DNA phosphodiesterase 2 OS=Xenopus tropica... [more]
TYDP2_XENLA1.487e-1727.53Tyrosyl-DNA phosphodiesterase 2 OS=Xenopus laevis ... [more]
TYDP2_MOUSE1.952e-1728.15Tyrosyl-DNA phosphodiesterase 2 OS=Mus musculus GN... [more]
TYDP2_BOVIN1.587e-1528.21Tyrosyl-DNA phosphodiesterase 2 OS=Bos taurus GN=T... [more]
TYDP2_RAT5.483e-1528.48Tyrosyl-DNA phosphodiesterase 2 OS=Rattus norvegic... [more]
TYDP2_CHICK7.027e-1427.83Tyrosyl-DNA phosphodiesterase 2 OS=Gallus gallus G... [more]
TYDP2_HUMAN5.489e-1327.31Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN... [more]
TYDP2_DANRE1.187e-1227.38Tyrosyl-DNA phosphodiesterase 2 OS=Danio rerio GN=... [more]
TYDP2_CAEBR7.989e-928.155'-tyrosyl-DNA phosphodiesterase OS=Caenorhabditis... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005135Endonuclease/exonuclease/phosphataseGENE3D3.60.10.10coord: 33..302
e-value: 1.4E-14
score: 53.7
IPR005135Endonuclease/exonuclease/phosphatasePFAMPF03372Exo_endo_phoscoord: 39..295
e-value: 2.8E-19
score: 69.8
IPR005135Endonuclease/exonuclease/phosphataseSUPERFAMILY56219DNase I-likecoord: 35..302
NoneNo IPR availablePANTHERPTHR15822:SF4TYROSYL-DNA PHOSPHODIESTERASE 2coord: 18..305
NoneNo IPR availablePANTHERPTHR15822TRAF AND TNF RECEPTOR-ASSOCIATED PROTEINcoord: 18..305

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001670 ID=g.arboreum_cottongen_reftransV1_0001670; Name=g.arboreum_cottongen_reftransV1_0001670; organism=Gossypium arboreum; type=contig; length=1129bp
GACAAAATGATCATATGATTTCCATACATGGAAGTTTTCATACAAAAAAA
GCTAAATGCTGCAAACCATTCGCATCATAGTCCGTTACTAGTCTATACAA
AATCGGCATACGAGTATGACCGCAAATACGGATGAAAATAGACGAACAAT
TCGAGCTTAAACCGAACCATATATGATGCCAGACCGGGCATTACTGACTT
GAGATTGTTAAAAGCAAGCCATAATGATCACTTGGCAAAACAGGAAGTTC
CAATAACTTCTTCTCTTTCCTCACATTCTTCTCCTTGGTATATGATAAAC
CCGGTATTGGCTCTACCCCGATCATCTCGACTGCACAGACTTTAAAACCA
TTCAGCTTGCATAGAAAGCGATCTAGTCGTTTTCGTAATGTACGATTTGC
CGATAACATCTGGTTTGATTTGGTATCATACGTCCATCCATCTTCAGCAG
GCCTTAACTCGTTCCAAGCATCAATCCATCCATCAGTTAAAGGAAACTGA
CCATCTAATTTGTCATCCCAATTCATATCACCACCAAAAATAACATTCGG
CTTATTCTCGAGAATATTGATCGCTACTTTCGCTTGTTCTACACGTTCCT
TACTATACATTTGATCCCATTTCGGCGGAGCAGGACACGGACTCTCGAGA
TGGGTAGTAGCAACAACAAGCGTTGTTTCACCCCCAGAAAGTTCAACCTC
AGTCATGCAAAGTTCTCGCCCCATTATCGAATTATCAAAAGGTTCACGAC
GAAAGGATTTCACAGGGAATTTGCTTAACTGTATACAAAAGTAAGCTCTC
AAACTCGCCGTGTCGTCTGAGATAGAGCACCGGTACCCTTTCCACCAGTT
AGACCCACGAAAAATGTCATAAATCATCGGAGTAACCTCTTGAAAACAAA
TGATATCAGGGGAATGAAGTTGAATAAGGTCACCAATAGCTTTCATCCTC
TTGTGAACCTCTAAATCTTCCCTAAACCAAACATTGTAGCTCAATATCTT
CAATGAAGCTTTAATGGATCCTGAATTACTACCCTCTATTTGAACAGCTT
TATTGGAGGCTTTAATGCCACGAAAACCACCCAATTCGATACAATCTTCA
TTACCCAGATTTGGTTCCCTGATCTTCCT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase