g.arboreum_cottongen_reftransV1_0010582, g.arboreum_cottongen_reftransV1_0010582 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0010582
Unique Nameg.arboreum_cottongen_reftransV1_0010582
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1363
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr9chromosomeg.arboreum_cottongen_reftransV1_0010582:1..1363 .
Chr9:30545207..30546569 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy TrEMBL
Match: R0GUZ4_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10004238mg PE=4 SV=1)

HSP 1 Score: 610.912 bits (1574), Expect = 0.000e+0
Identity = 281/424 (66.27%), Postives = 349/424 (82.31%), Query Frame = -2
Query:  106 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDLEEEEKREVVLWHSEKLALCYGLIN-----GAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHYRDGVCSCRDYW 1362
            R+IFDQ  +KDLV W+ MIS YAE+D PQEALR+F E++  GI+PD +TM SVISACANLG L  AKW+H Y   +G    L INNALI+MYAKCG L  ARNVFE M +RNV+SW+ MINA+++HG+A++AL  F +MK+    PN +TFVGVLY CSH+GLVE+G+KIFASM +E+NITP  EHYGCMVDL  RAN L+EA+EI+E+MP APNVVIWGSLMSAC++HGE +LGE  AK +L+LEPDHDGALVL+SNIYA+E++W +V ++R +MKE+ + KE+G SRI+LN + HEFL+ D+ HKQ+ +IY KL+EVVS+LKL GY P++G VLVD+EEEEK ++VLWHSEKLALC+GL+N     G+  + IRIVKNLRVCEDCHTF KLVSKVY REIIVRDRTRFHHY+DG+CSCRDYW
Sbjct:  301 RVIFDQTEKKDLVCWTTMISAYAENDHPQEALRVFDEMRYSGIKPDLITMFSVISACANLGTLGNAKWVHHYTHISGLESVLPINNALINMYAKCGGLNEARNVFENMPTRNVVSWSSMINAYSMHGEASDALISFARMKQENAVPNAITFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPTLEHYGCMVDLFCRANRLQEALEIIESMPMAPNVVIWGSLMSACRVHGELKLGESAAKHILKLEPDHDGALVLMSNIYAREQRWDDVRNIRCVMKEKNVFKEKGLSRIDLNGKSHEFLIGDKRHKQSDKIYAKLDEVVSKLKLAGYVPHSGSVLVDVEEEEKNDLVLWHSEKLALCFGLMNKEEEKGSCGTVIRIVKNLRVCEDCHTFFKLVSKVYEREIIVRDRTRFHHYKDGLCSCRDYW 724          

HSP 2 Score: 123.635 bits (309), Expect = 7.774e-27
Identity = 70/265 (26.42%), Postives = 132/265 (49.81%), Query Frame = -2
Query:  667 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRN-------------------------------VISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKI--FASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGET 1362
            R +FD+M ++D+V+W+ MI  Y       EA +LF+E++   + PD++ + +++SAC   G +   + I+ +  +N       +  AL+ MYA  G ++ AR  FEKM+ RN                               ++ WT MI+A+A +     ALR F +M+ + ++P+ +T   V+ AC++ G + + + +  +  +    ++ P +     ++++  +   L EA  + E MP   NVV W S+++A  +HGE 
Sbjct:  169 RNVFDEMSQRDVVTWNTMIDRYCRCGLLDEAFKLFEEMKFSNVMPDEMILCNIVSACGRTGNMSYNRAIYDFLIENDVSMDTHLLTALVTMYAGSGCMDMAREFFEKMSVRNLFVSTAMVSGYSKAGRLNEARVIFDQTEKKDLVCWTTMISAYAENDHPQEALRVFDEMRYSGIKPDLITMFSVISACANLGTLGNAKWVHHYTHISGLESVLPIN---NALINMYAKCGGLNEARNVFENMP-TRNVVSWSSMINAYSMHGEA 429          

HSP 3 Score: 92.4337 bits (228), Expect = 1.020e-16
Identity = 55/231 (23.81%), Postives = 109/231 (47.19%), Query Frame = -2
Query:  634 VSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVL 1326
            V ++  +   + S++P+  +  ++ ++  G R DQ +   ++ A   +    +   IH  A K        +   L+DMYA CG +E ARNVF++M+ R+V++W  MI+ +   G  + A + F++MK + V P+ +    ++ AC   G +   R I+  +I E++++        +V +   +  +  A E  E M       +    +S   + G ++ G     RV+
Sbjct:   80 VVFNPFLRDLSRSNEPRATILFYQRIRHAGGRLDQFSFPPILKAACKVSAFFEGMEIHGVAFKMATLSDPFVQTGLMDMYASCGRIECARNVFDEMSQRDVVTWNTMIDRYCRCGLLDEAFKLFEEMKFSNVMPDEMILCNIVSACGRTGNMSYNRAIYDFLI-ENDVSMDTHLLTALVTMYAGSGCMDMAREFFEKMS------VRNLFVSTAMVSGYSKAGRLNEARVI 303          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy TrEMBL
Match: S8CJR2_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_09864 PE=4 SV=1)

HSP 1 Score: 579.326 bits (1492), Expect = 0.000e+0
Identity = 274/420 (65.24%), Postives = 337/420 (80.24%), Query Frame = -2
Query:  106 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDLEEEEKREVVLWHSEKLALCYGLINGAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHY-RDGVCSCRDYW 1362
            RL+FD+MV+KDLV WSAMIS YAESD PQEAL++F ++Q  GI+PDQVTMLSVISACA+LG L +AK IH    +  FG +L INNALIDMYAKCGSL  A  VF +M  +NVISW+ MINAFA+HGDA NAL++F  MK   VEPN +TFVGVLYACSHAGLV +G+K F SM+ E+ ITPK EHYGC+VDL GRAN +R+A++IVETMP APNVVIWGSLM AC IHGE +LG + AK+VLEL+P HDGA + LSN YAKER W++VG LR LM++RGI KERG S IE+ + +HEFL  DR H++A EIY KL +VV ++K  GY+PNTG VL+D++E+EK  VV+ HSEKLALCYGLI   ++ CIRI+KNLR+CEDCH F+KL S V++REI++RDR+RFH +  DG CSC D+W
Sbjct:  309 RLVFDEMVDKDLVCWSAMISCYAESDHPQEALKIFDQMQQNGIKPDQVTMLSVISACAHLGALHRAKQIHETVVRKEFGRALPINNALIDMYAKCGSLHDASEVFIRMHHKNVISWSSMINAFAVHGDAANALKHFTLMKLENVEPNWITFVGVLYACSHAGLVVEGQKAFESMVEEYRITPKLEHYGCLVDLYGRANHIRKALQIVETMPMAPNVVIWGSLMGACWIHGEFDLGVYAAKQVLELDPSHDGAHIFLSNAYAKERWWESVGGLRGLMRQRGIVKERGCSAIEVGDRIHEFLTGDRRHERADEIYAKLYQVVEKVKQVGYSPNTGGVLIDVDEDEKEAVVIGHSEKLALCYGLIEKGEEGCIRIIKNLRICEDCHKFVKLASGVFKREIVIRDRSRFHRFGGDGSCSCGDFW 728          

HSP 2 Score: 127.102 bits (318), Expect = 4.469e-28
Identity = 76/283 (26.86%), Postives = 142/283 (50.18%), Query Frame = -2
Query:  619 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGD-------------------------------ANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEH--NITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGET--ELGEFTAKRVLELEPD 1362
            R +FD M  KD+V+W+ MI GY +S    +AL L +E++  G+ PD+    +++S CA    LD  K +H    ++G     ++  AL++MYA  G+++ A+ +++KM  +NV++ T MI   + HGD                                  AL+ F +M++  ++P+ VT + V+ AC+H G +   ++I  +++ +      P +     ++D+  +   L +A E+   M    NV+ W S+++A  +HG+    L  FT  ++  +EP+
Sbjct:  178 RFLFDAMSHKDIVAWNIMIDGYCQSQLFDDALALLEEMKS-GVEPDERIFTTILSGCARFKKLDIGKSVHELISRSGTVLDSQLQTALVNMYANSGAMDLAQTLYDKMKIKNVVASTVMITGHSRHGDIGAARLVFDEMVDKDLVCWSAMISCYAESDHPQEALKIFDQMQQNGIKPDQVTMLSVISACAHLGALHRAKQIHETVVRKEFGRALPINN---ALIDMYAKCGSLHDASEVFIRM-HHKNVISWSSMINAFAVHGDAANALKHFTLMKLENVEPN 455          

HSP 3 Score: 70.4774 bits (171), Expect = 1.190e-9
Identity = 59/271 (21.77%), Postives = 119/271 (43.91%), Query Frame = -2
Query:  508 MISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNI---YAKERKWQNVGDLRQLMKERGISKER 1311
            +I+  + S   + A+  F+ +       D+ +   +I   +    LD+ +  H  A K G+     +  AL+ MY  CG +  AR +F+ M+ +++++W  MI+ +      ++AL   ++MK   VEP+   F  +L  C+    ++ G+ +   +I+        +    +V++   +  +  A  + + M    NVV      S   I G +  G+  A R++  +   D  LV  S +   YA+    Q    +   M++ GI  ++
Sbjct:   94 IINHLSRSSDNRNAILFFQAMLRKDFPIDRFSFPPMIKTASKARALDEGRMFHALAAKLGYDSDPFVETALMGMYGACGLISDARFLFDAMSHKDIVAWNIMIDGYCQSQLFDDALALLEEMKSG-VEPDERIFTTILSGCARFKKLDIGKSVH-ELISRSGTVLDSQLQTALVNMYANSGAMDLAQTLYDKMKI-KNVV-----ASTVMITGHSRHGDIGAARLV-FDEMVDKDLVCWSAMISCYAESDHPQEALKIFDQMQQNGIKPDQ 355          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy TrEMBL
Match: M0UAN8_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 519.235 bits (1336), Expect = 1.557e-178
Identity = 243/419 (58.00%), Postives = 305/419 (72.79%), Query Frame = -2
Query:  106 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDLEEEEKREVVLWHSEKLALCYGLINGAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHYRDGVCSCRDYW 1362
            R IFDQM +KDLV WSAMISGYAESDQP EAL+LF E+ +LG++PDQ+TMLSVISACAN+G  D+AKW+H++ DKNGF   L I NALIDMY+KCGSL  AR +F++   ++VI+WT MI  FA+HG+  +AL  F  M    V+PNGVTF+ +LYACSHAGLV++GR+IF SMI ++ + PKHEHYGCMVDLLGRA LL+EA+E +E+MPFAPNVV+WGSL+ AC+IHG+ +LGE  A+R+LEL+P+HDGA VLLSNIYAK  +W++V ++R LMK +G                         H ++ EIY K                       L+EEEKRE +L HSEKLAL  GLI+  K S I I KNLRVC+DCHTF+KL SKV+ REI++RDRTRFHHY+DGVCSC D+W
Sbjct:   66 RFIFDQMTDKDLVCWSAMISGYAESDQPNEALKLFNEMHLLGVKPDQITMLSVISACANMGARDQAKWVHIFVDKNGFHQILSIRNALIDMYSKCGSLVDARTIFDETAFKDVITWTSMITGFAMHGNGRSALAVFDHMISEGVKPNGVTFISLLYACSHAGLVDEGRRIFESMIQDYRLEPKHEHYGCMVDLLGRARLLQEALEFIESMPFAPNVVVWGSLLGACRIHGDVKLGELVARRLLELDPNHDGAYVLLSNIYAKASRWEDVREVRNLMKNKGC------------------------HPRSSEIYGK-----------------------LDEEEKREAILLHSEKLALSLGLIDSKKGSSIHIAKNLRVCDDCHTFMKLASKVFEREIVLRDRTRFHHYKDGVCSCGDFW 437          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy TrEMBL
Match: M0TTX8_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 517.309 bits (1331), Expect = 9.596e-178
Identity = 242/419 (57.76%), Postives = 304/419 (72.55%), Query Frame = -2
Query:  106 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDLEEEEKREVVLWHSEKLALCYGLINGAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHYRDGVCSCRDYW 1362
            R IFDQM +KDLV WSAMISGYAESDQP EAL+LF E+ +LG++PDQ+TMLSVISACAN+G  D+AKW+H++ DKNGF   L I NALIDMY+KCGSL  AR +F++   ++VI+WT MI  FA+HG+  +AL  F  M    V+PNGVTF+ +LYACSHAGLV++GR+IF SMI ++ + PKHEHYGCMVDLLGRA LL+EA+E +E+MPFAPNVV+WGSL+ AC+IHG+ +LGE  A+R+LEL+P+HDGA VLLSNIYAK  +W++V ++R LMK +G                         H ++ EIY K                       L+EEEKRE +L HSEKLAL  GLI+  K S I I KN+RVC DCHTF+KL SKV+ REI++RDRTRFHHY+DGVCSC D+W
Sbjct:   66 RFIFDQMTDKDLVCWSAMISGYAESDQPNEALKLFNEMHLLGVKPDQITMLSVISACANMGARDQAKWVHIFVDKNGFHQILSIRNALIDMYSKCGSLVDARTIFDETAFKDVITWTSMITGFAMHGNGRSALAVFDHMISEGVKPNGVTFISLLYACSHAGLVDEGRRIFESMIQDYRLEPKHEHYGCMVDLLGRARLLQEALEFIESMPFAPNVVVWGSLLGACRIHGDVKLGELVARRLLELDPNHDGAYVLLSNIYAKASRWEDVREVRNLMKNKGC------------------------HPRSNEIYGK-----------------------LDEEEKREAILLHSEKLALSLGLIDSKKGSSIHIAKNIRVCNDCHTFMKLASKVFEREIVLRDRTRFHHYKDGVCSCGDFW 437          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy TrEMBL
Match: A0A078I121_BRANA (BnaC01g22730D protein OS=Brassica napus GN=BnaC01g22730D PE=4 SV=1)

HSP 1 Score: 481.871 bits (1239), Expect = 4.774e-161
Identity = 222/339 (65.49%), Postives = 276/339 (81.42%), Query Frame = -2
Query:  346 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDL 1362
            R IFD+M +KDLV W+ MIS YAESD P+EALR+F E++  G  PD++ M SV+SACA+LGVL+KAKW+H Y  +NGF  SL +NNALI+MYAKCGSL+ AR VFE+M ++NV+SW+ MINAF++HG+AN+AL  F +MK+  VEPN VTFVGVLY CSH+GLVE+G KI ASM +E+NITPK EHYGCMVDL GRAN L EA+E++E+MP APNV IWGSLMSAC++HGE ELGEF AKRVLELEPDHDGALVL+SNIYA+E +W +V  +R+ M+E+ + KE+G SRI+LN E HEFL+ D+ HKQ+ EI  KL EVVS LKL G  P+ G VLVD+
Sbjct:  295 RDIFDRMEKKDLVCWTTMISAYAESDHPEEALRVFDEMRRYGTEPDEIAMGSVVSACASLGVLEKAKWVHEYTHRNGFESSLTVNNALINMYAKCGSLDAARGVFEEMPTKNVVSWSSMINAFSMHGEANDALALFARMKQENVEPNDVTFVGVLYGCSHSGLVEEGNKILASMTDEYNITPKLEHYGCMVDLFGRANRLPEALEVIESMPMAPNVFIWGSLMSACRVHGELELGEFAAKRVLELEPDHDGALVLMSNIYAREERWDDVRKVRRGMEEKNVFKEKGVSRIDLNGESHEFLIGDKRHKQSDEISAKLKEVVSELKLAGCIPDYGSVLVDV 633          

HSP 2 Score: 115.546 bits (288), Expect = 2.350e-24
Identity = 75/289 (25.95%), Postives = 137/289 (47.40%), Query Frame = -2
Query:  619 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNG--------------FGG-----------------SLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDG--------RKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETE--LGEFTAKRVLELEPD 1362
            R +FD+M ++D+V+W+ MI  Y      +EA +LF+E++   + PD++ + +++SACA  G       I+ +  +N               + G                 SL ++ A++  +AK   L+ AR++F++M  ++++ WT MI+A+A       ALR F +M+    EP+ +    V+ AC+  G++E          R  F S +  +N          ++++  +   L  A  + E MP   NVV W S+++A  +HGE    L  F   +   +EP+
Sbjct:  163 RKVFDEMPQRDVVTWNTMIERYCRCGFLEEAFKLFEEMKCSNVMPDEMILCNIVSACARSGNTRYNSPIYEFLKENDVRMDAHLLTALVTMYAGAGCMDIAREFYMKMSVRSLFVSTAMVSGFAKARRLDDARDIFDRMEKKDLVCWTTMISAYAESDHPEEALRVFDEMRRYGTEPDEIAMGSVVSACASLGVLEKAKWVHEYTHRNGFESSLTVNN---------ALINMYAKCGSLDAARGVFEEMP-TKNVVSWSSMINAFSMHGEANDALALFARMKQENVEPN 441          

HSP 3 Score: 85.5001 bits (210), Expect = 1.567e-14
Identity = 65/258 (25.19%), Postives = 113/258 (43.80%), Query Frame = -2
Query:  619 AESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASM------INEHNITPKHEHY---GC---------------------MVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSAC--QIHGETELGEFTAKRVLELEPD 1296
            + SD+P+  +  ++ ++  G R DQ +   ++ A A +  L +   +H  A K        +  A++DMYA CG +  AR VF++M  R+V++W  MI  +   G    A + F++MK + V P+ +    ++ AC+ +G       I+  +      ++ H +T     Y   GC                     MV    +A  L +A +I + M    ++V W +++SA     H E  L  F   R    EPD
Sbjct:   84 SRSDEPRATILFYQRIRHAGGRLDQFSFTPILKAAAKVSALFEGTELHGLALKLATLSDPFVKTAVMDMYACCGKIVEARKVFDEMPQRDVVTWNTMIERYCRCGFLEEAFKLFEEMKCSNVMPDEMILCNIVSACARSGNTRYNSPIYEFLKENDVRMDAHLLTALVTMYAGAGCMDIAREFYMKMSVRSLFVSTAMVSGFAKARRLDDARDIFDRME-KKDLVCWTTMISAYAESDHPEEALRVFDEMRRYGTEPD 340          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 620.157 bits (1598), Expect = 0.000e+0
Identity = 289/425 (68.00%), Postives = 355/425 (83.53%), Query Frame = -2
Query:  106 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDLEEEEKREVVLWHSEKLALCYGLIN----GAKDSC--IRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHYRDGVCSCRDYW 1362
            ++IFDQ  +KDLV W+ MIS Y ESD PQEALR+F+E+   GI+PD V+M SVISACANLG+LDKAKW+H     NG    L INNALI+MYAKCG L+  R+VFEKM  RNV+SW+ MINA ++HG+A++AL  F +MK+  VEPN VTFVGVLY CSH+GLVE+G+KIFASM +E+NITPK EHYGCMVDL GRANLLREA+E++E+MP A NVVIWGSLMSAC+IHGE ELG+F AKR+LELEPDHDGALVL+SNIYA+E++W++V ++R++M+E+ + KE+G SRI+ N + HEFL+ D+ HKQ+ EIY KL+EVVS+LKL GY P+ G VLVD+EEEEK+++VLWHSEKLALC+GL+N      KDSC  IRIVKNLRVCEDCH F KLVSKVY REIIVRDRTRFH Y++G+CSCRDYW
Sbjct:  298 QVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722          

HSP 2 Score: 114.005 bits (284), Expect = 1.063e-25
Identity = 73/281 (25.98%), Postives = 134/281 (47.69%), Query Frame = -2
Query:  619 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRN-------------------------------VISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETE--LGEFTAKRVLELEPD 1362
            R +FD+M  +D+V+W+ MI  Y       EA +LF+E++   + PD++ + +++SAC   G +   + I+ +  +N       +  AL+ MYA  G ++ AR  F KM+ RN                               ++ WT MI+A+        ALR F++M  + ++P+ V+   V+ AC++ G++ D  K   S I+ + +  +      ++++  +   L    ++ E MP   NVV W S+++A  +HGE    L  F   +   +EP+
Sbjct:  166 RNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGIL-DKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMP-RRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPN 444          

HSP 3 Score: 90.1225 bits (222), Expect = 7.302e-18
Identity = 52/231 (22.51%), Postives = 108/231 (46.75%), Query Frame = -2
Query:  634 VSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVL 1326
            + ++  +   + S +P+  +  ++ ++ +G R DQ + L ++ A + +  L +   +H  A K        +    +DMYA CG +  ARNVF++M+ R+V++W  MI  +   G  + A + F++MK++ V P+ +    ++ AC   G +   R I+  +I E+++         +V +   A  +  A E    M       +    +S   + G ++ G     +V+
Sbjct:   77 IVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLI-ENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMS------VRNLFVSTAMVSGYSKCGRLDDAQVI 300          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 450.669 bits (1158), Expect = 2.381e-151
Identity = 202/418 (48.33%), Postives = 299/418 (71.53%), Query Frame = -2
Query:  106 IFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEAR-VEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDLEEEEKREVVLWHSEKLALCYGLINGAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHYRDGVCSCRDYW 1356
            +FD+M EKDLV+W+++I+G+AE+ +P+EAL L+ E+   GI+PD  T++S++SACA +G L   K +HVY  K G   +L  +N L+D+YA+CG +E A+ +F++M  +N +SWT +I   A++G    A+  F+ M+    + P  +TFVG+LYACSH G+V++G + F  M  E+ I P+ EH+GCMVDLL RA  +++A E +++MP  PNVVIW +L+ AC +HG+++L EF   ++L+LEP+H G  VLLSN+YA E++W +V  +R+ M   G+ K  G+S +E+ N VHEFL+ D++H Q+  IY KL E+  RL+ +GY P    V VD+EEEEK   V++HSEK+A+ + LI+  + S I +VKNLRVC DCH  +KLVSKVY REI+VRDR+RFHH+++G CSC+DYW
Sbjct:  178 VFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595          

HSP 2 Score: 118.627 bits (296), Expect = 2.420e-27
Identity = 64/217 (29.49%), Postives = 112/217 (51.61%), Query Frame = -2
Query:  673 WSAMISGYAESDQPQEALRLFKELQILG-IRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHG 1320
            W+ +I GYAE      A  L++E+++ G + PD  T   +I A   +  +   + IH    ++GFG  + + N+L+ +YA CG +  A  VF+KM  +++++W  +IN FA +G    AL  + +M    ++P+G T V +L AC+  G +  G+++   MI    +T        ++DL  R   + EA  + + M    N V W SL+    ++G
Sbjct:   88 WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV-GLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLAVNG 302          

HSP 3 Score: 72.4034 bits (176), Expect = 3.077e-12
Identity = 39/150 (26.00%), Postives = 88/150 (58.67%), Query Frame = -2
Query:  922 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQIL-GIRPDQVTMLSVISACANLGVLDKA-KWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSR-NVISWTGMINAFAIHGDANNALRYFQKMKEARVEPN 1362
            + +FD+MV+K+ VSW+++I G A +   +EA+ LFK ++   G+ P ++T + ++ AC++ G++ +  ++     ++      +     ++D+ A+ G +++A    + M  + NV+ W  ++ A  +HGD++  L  F +++  ++EPN
Sbjct:  277 KTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSD--LAEFARIQILQLEPN 424          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 442.965 bits (1138), Expect = 1.787e-146
Identity = 205/421 (48.69%), Postives = 289/421 (68.65%), Query Frame = -2
Query:  106 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQIL-GIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDLEEEEKREVVL-WHSEKLALCYGLINGAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHYRDGVCSCRDYW 1362
            R + + M +KD+V+W+A+IS Y ++ +P EAL +F ELQ+   ++ +Q+T++S +SACA +G L+  +WIH Y  K+G   +  + +ALI MY+KCG LE++R VF  +  R+V  W+ MI   A+HG  N A+  F KM+EA V+PNGVTF  V  ACSH GLV++   +F  M + + I P+ +HY C+VD+LGR+  L +AV+ +E MP  P+  +WG+L+ AC+IH    L E    R+LELEP +DGA VLLSNIYAK  KW+NV +LR+ M+  G+ KE G S IE++  +HEFL  D  H  + ++Y KL+EV+ +LK +GY P    VL  +EEEE +E  L  HSEKLA+CYGLI+      IR++KNLRVC DCH+  KL+S++Y REIIVRDR RFHH+R+G CSC D+W
Sbjct:  318 REVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738          

HSP 2 Score: 127.102 bits (318), Expect = 6.114e-30
Identity = 72/260 (27.69%), Postives = 135/260 (51.92%), Query Frame = -2
Query:  673 IFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAI-------------------------------HGDANNALRYFQKMK-EARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHG 1356
            +F  + EKD+VSW++MI+G+ +   P +AL LFK+++   ++   VTM+ V+SACA +  L+  + +  Y ++N    +L + NA++DMY KCGS+E A+ +F+ M  ++ ++WT M++ +AI                               +G  N AL  F +++ +  ++ N +T V  L AC+  G +E GR I  S I +H I         ++ +  +   L ++ E+  ++    +V +W +++    +HG
Sbjct:  188 VFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIH-SYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMHG 445          

HSP 3 Score: 110.153 bits (274), Expect = 2.214e-24
Identity = 71/251 (28.29%), Postives = 121/251 (48.21%), Query Frame = -2
Query:  613 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKEL-QILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHD 1362
            R +FD++ + +  +W+ +I  YA    P  ++  F ++       P++ T   +I A A +  L   + +H  A K+  G  + + N+LI  Y  CG L+ A  VF  +  ++V+SW  MIN F   G  + AL  F+KM+   V+ + VT VGVL AC+    +E GR++  S I E+ +         M+D+  +   + +A  + + M    NV  W +++    I  + E     A+ VL   P  D
Sbjct:   84 RKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQV-CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVT-WTTMLDGYAISEDYE----AAREVLNSMPQKD 328          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 431.409 bits (1108), Expect = 2.999e-143
Identity = 200/419 (47.73%), Postives = 298/419 (71.12%), Query Frame = -2
Query:  106 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDLEEEEKREVVLWHSEKLALCYGLINGAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHYRDGVCSCRDYW 1362
            R++FD+M ++ +VSW+ MISGY+ +   ++A+ +F+E++   IRP+ VT++SV+ A + LG L+  +W+H+YA+ +G      + +ALIDMY+KCG +E+A +VFE++   NVI+W+ MIN FAIHG A +A+  F KM++A V P+ V ++ +L ACSH GLVE+GR+ F+ M++   + P+ EHYGCMVDLLGR+ LL EA E +  MP  P+ VIW +L+ AC++ G  E+G+  A  ++++ P   GA V LSN+YA +  W  V ++R  MKE+ I K+ G S I+++  +HEF+V D +H +A EI   L E+  +L+L GY P T  VL++LEEE+K  V+ +HSEK+A  +GLI+ +    IRIVKNLR+CEDCH+ +KL+SKVY+R+I VRDR RFHH++DG CSC DYW
Sbjct:  228 RMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646          

HSP 2 Score: 118.242 bits (295), Expect = 3.865e-27
Identity = 77/280 (27.50%), Postives = 135/280 (48.21%), Query Frame = -2
Query:  667 IFDQMVEKDLVSWSAMISGYAESDQPQE--ALRLFKELQI-LGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLE---------------------------------------------RARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGR--KIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGET 1356
            IF+QM +++  SW+ +I G++ESD+ +   A+ LF E+     + P++ T  SV+ ACA  G + + K IH  A K GFGG   + + L+ MY  CG ++                                              AR +F+KM  R+V+SW  MI+ ++++G   +A+  F++MK+  + PN VT V VL A S  G +E G    ++A    +  I         ++D+  +  ++ +A+ + E +P   NV+ W ++++   IHG+ 
Sbjct:   81 IFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYA---EDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLP-RENVITWSAMINGFAIHGQA 356          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 420.239 bits (1079), Expect = 3.319e-139
Identity = 196/418 (46.89%), Postives = 282/418 (67.46%), Query Frame = -2
Query:  106 IFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDLEEEEKRE-VVLWHSEKLALCYGLINGAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHYRDGVCSCRDYW 1356
            +F +M EK+ +SW+ MISGY ++D  +EAL+LF E+Q   + PD V++ + +SACA LG L++ KWIH Y +K        +   LIDMYAKCG +E A  VF+ +  ++V +WT +I+ +A HG    A+  F +M++  ++PN +TF  VL ACS+ GLVE+G+ IF SM  ++N+ P  EHYGC+VDLLGRA LL EA   ++ MP  PN VIWG+L+ AC+IH   ELGE   + ++ ++P H G  V  +NI+A ++KW    + R+LMKE+G++K  G S I L    HEFL  DR+H +  +I  K   +  +L+ +GY P    +L+DL ++++RE +V  HSEKLA+ YGLI     + IRI+KNLRVC+DCH   KL+SK+Y+R+I++RDRTRFHH+RDG CSC DYW
Sbjct:  203 LFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 419.468 bits (1077), Expect = 3.952e-139
Identity = 191/420 (45.48%), Postives = 289/420 (68.81%), Query Frame = -2
Query:  106 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVL-VDLEEEEKREVVLWHSEKLALCYGLINGAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHYRDGVCSCRDYW 1362
            R +FD++VE  +V ++AMI+GYA  ++P EAL LF+E+Q   ++P+++T+LSV+S+CA LG LD  KWIH YA K+ F   +++N ALIDM+AKCGSL+ A ++FEKM  ++  +W+ MI A+A HG A  ++  F++M+   V+P+ +TF+G+L ACSH G VE+GRK F+ M+++  I P  +HYG MVDLL RA  L +A E ++ +P +P  ++W  L++AC  H   +L E  ++R+ EL+  H G  V+LSN+YA+ +KW+ V  LR++MK+R   K  G S IE+NN VHEF   D       +++  L+E+V  LKL GY P+T  V+  ++ ++EK   + +HSEKLA+ +GL+N    + IR+VKNLRVC DCH   KL+S ++ R++++RD  RFHH+ DG CSC D+W
Sbjct:  184 RCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603          

HSP 2 Score: 124.02 bits (310), Expect = 3.777e-29
Identity = 86/318 (27.04%), Postives = 153/318 (48.11%), Query Frame = -2
Query:  415 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETE--LGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKL 1362
            R +F+ M E D+V +++M  GY+    P E   LF E+   GI PD  T  S++ ACA    L++ + +H  + K G   ++ +   LI+MY +C  ++ AR VF+++    V+ +  MI  +A     N AL  F++M+   ++PN +T + VL +C+  G ++ G+ I      +H+     +    ++D+  +   L +AV I E M +  +   W +++ A   HG+ E  +  F   R   ++PD    L LL+      R  +      Q++ + GI        I+    + + L    N + AYE  +KL
Sbjct:   83 RHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIH-KYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK-DTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGI-----VPSIKHYGSMVDLLSRAGNLEDAYEFIDKL 393          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana GN=ELI1 PE=3 SV=1)

HSP 1 Score: 418.313 bits (1074), Expect = 3.145e-138
Identity = 195/421 (46.32%), Postives = 282/421 (66.98%), Query Frame = -2
Query:  106 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILG-IRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKE-ARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDLEEEEKREVVLWHSEKLALCYGLINGAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHYRDGVCSCRDYW 1362
            R +FD M E+D+VSW+ MI GYA+   P +AL LF++L   G  +PD++T+++ +SAC+ +G L+  +WIHV+   +    ++++   LIDMY+KCGSLE A  VF     +++++W  MI  +A+HG + +ALR F +M+    ++P  +TF+G L AC+HAGLV +G +IF SM  E+ I PK EHYGC+V LLGRA  L+ A E ++ M    + V+W S++ +C++HG+  LG+  A+ ++ L   + G  VLLSNIYA    ++ V  +R LMKE+GI KE G S IE+ N+VHEF   DR H ++ EIY  L ++  R+K  GY PNT  VL DLEE EK + +  HSE+LA+ YGLI+    S ++I KNLRVC DCHT  KL+SK+  R+I++RDR RFHH+ DG CSC D+W
Sbjct:  212 RALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632          

HSP 2 Score: 103.99 bits (258), Expect = 1.925e-22
Identity = 71/263 (27.00%), Postives = 123/263 (46.77%), Query Frame = -2
Query:  664 IFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFG-------------------------------GSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQK-MKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETE 1356
            +F Q ++ DL  ++A I+  + +    +A  L+ +L    I P++ T  S++ +C+        K IH +  K G G                                SL  + A+I  YAK G++E AR +F+ M  R+++SW  MI+ +A HG  N+AL  FQK + E + +P+ +T V  L ACS  G +E GR I    +    I    +    ++D+  +   L EAV +    P   ++V W ++++   +HG ++
Sbjct:   86 LFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHV-FVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTP-RKDIVAWNAMIAGYAMHGYSQ 342          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 410.994 bits (1055), Expect = 1.041e-135
Identity = 191/419 (45.58%), Postives = 277/419 (66.11%), Query Frame = -2
Query:  106 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDLEEEEKREVVLWHSEKLALCYGLINGAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHYRDGVCSCRDYW 1362
            R +F+ M E+D ++W+AMISGYA+  + +EAL +F  +Q+ G++ + V M+SV+SAC  LG LD+ +W H Y ++N    ++R+   L+D+YAKCG +E+A  VF  M  +NV +W+  +N  A++G     L  F  MK+  V PN VTFV VL  CS  G V++G++ F SM NE  I P+ EHYGC+VDL  RA  L +AV I++ MP  P+  +W SL+ A +++   ELG   +K++LELE  + GA VLLSNIYA    W NV  +RQ MK +G+ K+ G S +E+N EVHEF V D++H +  +I     ++  RL+L GY  +T  V+ D++EEEK + +  HSEK A+ +G+++  +D  IRIVKNLRVC DCH    ++SK++ REIIVRDR RFHH++DG CSC  +W
Sbjct:  194 RKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612          

HSP 2 Score: 91.6633 bits (226), Expect = 1.945e-18
Identity = 65/264 (24.62%), Postives = 115/264 (43.56%), Query Frame = -2
Query:  664 IFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILG--IRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYA-------------------------------KCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETE 1356
            I D+  +  L + ++MI  + +S  P+++   ++ +   G  ++PD  T+  ++ AC  L + +    +H    + GF     +   LI +YA                               +CG +  AR +FE M  R+ I+W  MI+ +A  G++  AL  F  M+   V+ NGV  + VL AC+  G ++ GR    S I  + I         +VDL  +   + +A+E+   M    NV  W S ++   ++G  E
Sbjct:   62 ILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAH-SYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGME-EKNVYTWSSALNGLAMNGFGE 323          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 412.92 bits (1060), Expect = 7.152e-135
Identity = 196/419 (46.78%), Postives = 287/419 (68.50%), Query Frame = -2
Query:  106 IFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADK--NGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDLEEEEKREVVLWHSEKLALCYGLINGAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHYRDGVCSCRDYW 1356
            +F+++  KD++SW+ +I GY   +  +EAL LF+E+   G  P+ VTMLS++ ACA+LG +D  +WIHVY DK   G   +  +  +LIDMYAKCG +E A  VF  +  +++ SW  MI  FA+HG A+ +   F +M++  ++P+ +TFVG+L ACSH+G+++ GR IF +M  ++ +TPK EHYGCM+DLLG + L +EA E++  M   P+ VIW SL+ AC++HG  ELGE  A+ ++++EP++ G+ VLLSNIYA   +W  V   R L+ ++G+ K  G S IE+++ VHEF++ D+ H +  EIY  L E+   L+  G+ P+T  VL ++EEE K   +  HSEKLA+ +GLI+    + + IVKNLRVC +CH   KL+SK+Y+REII RDRTRFHH+RDGVCSC DYW
Sbjct:  323 LFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741          

HSP 2 Score: 166.777 bits (421), Expect = 1.805e-43
Identity = 88/258 (34.11%), Postives = 150/258 (58.14%), Query Frame = -2
Query:  592 IFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINE-HNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHG--ETELGEFTAKRVLELEPDHDGALVLLS 1356
            +FD++  KD+VSW+AMISGYAE+   +EAL LFK++    +RPD+ TM++V+SACA  G ++  + +H++ D +GFG +L+I NALID+Y+KCG LE A  +FE++  ++VISW  +I  +        AL  FQ+M  +   PN VT + +L AC+H G ++ GR I   +      +T        ++D+  +   +  A ++  ++    ++  W +++    +HG  +     F+  R + ++PD    + LLS
Sbjct:  222 LFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLS 478          

HSP 3 Score: 108.227 bits (269), Expect = 9.072e-24
Identity = 69/254 (27.17%), Postives = 118/254 (46.46%), Query Frame = -2
Query:  688 IFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWT-------------------------------GMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSA 1356
            +F  + E +L+ W+ M  G+A S  P  AL+L+  +  LG+ P+  T   V+ +CA      + + IH +  K G    L ++ +LI MY + G LE A  VF+K   R+V+S+T                                MI+ +A  G+   AL  F+ M +  V P+  T V V+ AC+ +G +E GR++    I++H      +    ++DL  +   L  A  + E +P+  +V+ W +L+  
Sbjct:   90 VFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHL-WIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK-DVISWNTLIGG 341          
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy Swiss-Prot
Match: PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1)

HSP 1 Score: 412.149 bits (1058), Expect = 6.092e-134
Identity = 190/419 (45.35%), Postives = 273/419 (65.16%), Query Frame = -2
Query:  106 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLMKERGISKERGYSRIELNNEVHEFLVADRNHKQAYEIYEKLNEVVSRLKLDGYAPNTGCVLVDLEEEEKREVVLWHSEKLALCYGLINGAKDSCIRIVKNLRVCEDCHTFLKLVSKVYRREIIVRDRTRFHHYRDGVCSCRDYW 1362
            R +FD+  EK L SW+AMISGY ++   ++A+ LF+E+Q     P+ VT+  ++SACA LG L   KW+H       F  S+ ++ ALI MYAKCGS+  AR +F+ MT +N ++W  MI+ + +HG    AL  F +M  + + P  VTF+ VLYACSHAGLV++G +IF SMI+ +   P  +HY CMVD+LGRA  L+ A++ +E M   P   +W +L+ AC+IH +T L    ++++ EL+PD+ G  VLLSNI++ +R +     +RQ  K+R ++K  GY+ IE+    H F   D++H Q  EIYEKL ++  +++  GY P T   L D+EEEE+  +V  HSE+LA+ +GLI     + IRI+KNLRVC DCHT  KL+SK+  R I+VRD  RFHH++DGVCSC DYW
Sbjct:  374 RKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792          

HSP 2 Score: 104.76 bits (260), Expect = 1.165e-22
Identity = 58/231 (25.11%), Postives = 120/231 (51.95%), Query Frame = -2
Query:  664 IFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKELQILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMPFAPNVVIWGSLMSACQIHGETE 1356
            +F +  + D+V+++AMI GY  + + + +L LFKEL + G R    T++S++    +L ++     IH Y  K+ F     ++ AL  +Y+K   +E AR +F++   +++ SW  MI+ +  +G   +A+  F++M+++   PN VT   +L AC+  G +  G+ +   ++   +          ++ +  +   + EA  + + M    N V W +++S   +HG+ +
Sbjct:  278 LFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYA---IHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVH-DLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMT-KKNEVTWNTMISGYGLHGQGQ 503          

HSP 3 Score: 86.2705 bits (212), Expect = 1.404e-16
Identity = 70/312 (22.44%), Postives = 135/312 (43.27%), Query Frame = -2
Query:  535 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKEL-QILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKMKEARVEPNGVTFVG---------VLYAC----------SHAGL-------------VEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEIVETMP---FAPNVVIWGSLMSACQIHGETELGEFTAKRVLELEPDHDGALVLLSNIYAKERKWQNVGDLRQLM 1362
            R +FD+M EKD + W+ MISGY +++   E++++F++L      R D  T+L ++ A A L  L     IH  A K G      +    I +Y+KCG ++    +F +    +++++  MI+ +  +G+   +L  F+++  +       T V          ++YA           SHA +             +E  RK+F     + +       +  M+    +  L  +A+ +   M    F+PN V    ++SAC   G   LG++    V     D + ++ + + +     K  ++ + R+L 
Sbjct:  174 RKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLF-----DESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLV--RSTDFESSIYVSTALIGMYAKCGSIAEARRLF 478          

HSP 4 Score: 58.9214 bits (141), Expect = 6.326e-8
Identity = 54/242 (22.31%), Postives = 111/242 (45.87%), Query Frame = -2
Query:  658 RLIFDQMVEKDLVSWSAMISGYAESDQPQEALRLFKEL-QILGIRPDQVTMLSVISACANLGVLDKAKWIHVYADKNGFGGSLRINNALIDMYAKCGSLERARNVFEKMTSRNVISWTGMINAFAIHGDANNALRYFQKM-KEARVEPNGVTFVGVLYACSHAGLVEDGRKIFASMINEHNITPKHEHYGCMVDLLGRANLLREAVEI-VETMPF----APNVVIWGSLMSACQIHGETELG 1362
            R IF  +   D+  ++ ++ G++ ++ P  +L +F  L +   ++P+  T    ISA +        + IH  A  +G    L + + ++ MY K   +E AR VF++M  ++ I W  MI+ +  +     +++ F+ +  E+    +  T + +L A +    +  G +I       H++  K   Y     L G  +L  +  +I + +  F     P++V + +++     +GETEL 
Sbjct:   72 RDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQI-------HSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELS 306          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
R0GUZ4_9BRAS7.774e-2766.27Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
S8CJR2_9LAMI4.469e-2865.24Uncharacterized protein OS=Genlisea aurea GN=M569_... [more]
M0UAN8_MUSAM1.557e-17858.00Uncharacterized protein OS=Musa acuminata subsp. m... [more]
M0TTX8_MUSAM9.596e-17857.76Uncharacterized protein OS=Musa acuminata subsp. m... [more]
A0A078I121_BRANA4.774e-16165.49BnaC01g22730D protein OS=Brassica napus GN=BnaC01g... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0010582 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PP311_ARATH1.063e-2568.00Pentatricopeptide repeat-containing protein At4g14... [more]
PP330_ARATH2.381e-15148.33Pentatricopeptide repeat-containing protein At4g21... [more]
PP175_ARATH1.787e-14648.69Pentatricopeptide repeat-containing protein At2g29... [more]
PP425_ARATH2.999e-14347.73Pentatricopeptide repeat-containing protein At5g48... [more]
PP449_ARATH3.319e-13946.89Pentatricopeptide repeat-containing protein At5g66... [more]
PP145_ARATH3.952e-13945.48Pentatricopeptide repeat-containing protein At2g02... [more]
PP354_ARATH3.145e-13846.32Pentatricopeptide repeat-containing protein ELI1, ... [more]
PP410_ARATH1.041e-13545.58Putative pentatricopeptide repeat-containing prote... [more]
PPR21_ARATH7.152e-13546.78Pentatricopeptide repeat-containing protein At1g08... [more]
PP341_ARATH6.092e-13445.35Pentatricopeptide repeat-containing protein At4g30... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 111..157
e-value: 1.6E-8
score: 34.5
coord: 9..57
e-value: 5.5E-10
score: 39.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 185..209
e-value: 0.22
score: 11.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 113..146
e-value: 6.0E-6
score: 24.1
coord: 85..112
e-value: 1.5E-4
score: 19.7
coord: 12..45
e-value: 6.8E-7
score: 27.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 214..244
score: 5.064
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 146..181
score: 8.002
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 248..282
score: 5.711
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 80..110
score: 8.714
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 45..79
score: 6.884
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 10..44
score: 12.288
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 111..145
score: 10.841
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 182..212
score: 5.974
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 11..142
e-value: 3.9E-9
score: 35.0
coord: 212..265
e-value: 3.9E-9
score: 35.0
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 90..135
coord: 229..265
coord: 295..317
IPR032867DYW domainPFAMPF14432DYW_deaminasecoord: 285..407
e-value: 3.2E-36
score: 123.9
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..289
NoneNo IPR availablePANTHERPTHR24015:SF581SUBFAMILY NOT NAMEDcoord: 1..289

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0010582 ID=g.arboreum_cottongen_reftransV1_0010582; Name=g.arboreum_cottongen_reftransV1_0010582; organism=Gossypium arboreum; type=contig; length=1363bp
TTGGAGAGCAGTCATGTTCCAAGCAACTCACTGTTGGTATTCCAATACAA
ATTTTACCATAATCCATAAACAATTCCGAGCAGAGAAAAGGCTCAAGAAA
CATCACCAATAGTCTCTGCAAGAACAAACTCCATCTCTGTAATGGTGGAA
CCTTGTCCTATCCCTGACAATAATTTCCCTCCTATACACCTTCGAAACTA
ACTTCAAAAAGGTATGGCAGTCCTCGCAAACTCGAAGATTCTTAACTATC
CGAATGCATGAATCTTTTGCCCCATTTATGAGTCCATAACAAAGTGCTAA
CTTCTCACTATGCCATAGAACCACCTCCCTTTTTTCTTCCTCTTCTAAGT
CAACAAGAACACAACCGGTATTTGGAGCATAGCCATCCAACTTCAATCGA
CTAACCACCTCATTCAATTTTTCATATATCTCATACGCTTGTTTGTGATT
CCTATCTGCCACTAAAAACTCATGCACCTCATTGTTCAATTCAATCCTAC
TATATCCCCTTTCCTTAGATATACCTCTTTCTTTCATTAATTGCCTCAAG
TCTCCAACATTTTGCCATTTTCTTTCTTTGGCATAAATATTTGATAGTAG
AACAAGAGCCCCATCATGATCTGGCTCAAGCTCGAGTACCCTTTTGGCAG
TGAATTCTCCTAATTCAGTCTCACCATGAATTTGACAAGCAGACATGAGG
GATCCCCAAATGACAACATTGGGTGCAAAAGGCATCGTCTCTACAATCTC
AACTGCTTCTCTCAAGAGATTAGCACGGCCAAGGAGGTCAACCATGCAAC
CATAATGTTCATGTTTAGGAGTGATATTGTGTTCATTAATCATGGATGCA
AAGATCTTTCGGCCATCCTCAACCAGCCCTGCATGGCTACAAGCATAAAG
CACGCCCACAAATGTAACTCCATTTGGCTCAACACGAGCCTCTTTCATTT
TCTGAAAGTATCTTAAAGCATTATTGGCATCCCCATGTATAGCAAATGCA
TTGATCATACCGGTCCAAGATATCACATTTCTGCTTGTCATTTTCTCAAA
AACATTTCTTGCTCTTTCCAAACTCCCACATTTGGCATACATGTCAATAA
GAGCATTATTAATACGTAAACTTCCTCCAAAACCGTTCTTATCAGCATAT
ACATGTATCCATTTAGCTTTATCTAGTACACCCAGATTTGCACAAGCTGA
TATAACACTCAGCATGGTCACCTGATCAGGTCTTATTCCTAGTATTTGCA
GTTCCTTAAACAATCTAAGAGCCTCTTGAGGTTGATCACTCTCAGCATAA
CCAGATATCATTGCACTCCAAGACACCAAGTCCTTCTCTACCATTTGGTC
AAAAATCAATCGA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_rpt
IPR011990TPR-like_helical_dom_sf
IPR032867DYW_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding