g.arboreum_cottongen_reftransV1_0002791, g.arboreum_cottongen_reftransV1_0002791 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: A0A0B0PGS2_GOSAR (Synapse-associated of 47 kDa OS=Gossypium arboreum GN=F383_32776 PE=4 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 3.286e-41 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTMPNKIADLVADTAKKSKELAFEASKKADELALEASKKADELRVAALXXXXXXXXXXXXXXXXXXXXXPPQLSSLSIASSD 352 MEDFWQRAKSFAEETAKKSQTLTMPNKIADLVADTAKKSKELAFEASKKADELALEASKKADELRVAALKQADQIQLQSQSLSKSISDIIPPQLSSLSIASSD Sbjct: 1 MEDFWQRAKSFAEETAKKSQTLTMPNKIADLVADTAKKSKELAFEASKKADELALEASKKADELRVAALKQADQIQLQSQSLSKSISDIIPPQLSSLSIASSD 103
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: A0A0D2TYJ7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G097600 PE=4 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 3.621e-38 Identity = 98/103 (95.15%), Postives = 102/103 (99.03%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTMPNKIADLVADTAKKSKELAFEASKKADELALEASKKADELRVAALXXXXXXXXXXXXXXXXXXXXXPPQLSSLSIASSD 352 MEDFW+RAKSFAEETAKKSQTLTMPNKIADLVA+TAKKSKELA EASKKADELALEASKKADEL+VAALKQADQIQLQSQSLSK+ISDIIPPQLSSLSIASSD Sbjct: 1 MEDFWKRAKSFAEETAKKSQTLTMPNKIADLVAETAKKSKELALEASKKADELALEASKKADELKVAALKQADQIQLQSQSLSKTISDIIPPQLSSLSIASSD 103
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: A0A0D2U500_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G175300 PE=4 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.624e-22 Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTMPNKIADLVADTAKKSKELAFEASKKADELALEASKKADELRVAAL 250 MEDFW+RAKSFAEE AKKSQTLT PNK+ADLVA+TAKKSKELA EA+KKADEL A K+AD++++ ++ Sbjct: 1 MEDFWKRAKSFAEEAAKKSQTLTSPNKLADLVAETAKKSKELAVEATKKADELKTAALKQADQIQIQSI 69
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: A0A0D2RH36_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G175300 PE=4 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.819e-22 Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTMPNKIADLVADTAKKSKELAFEASKKADELALEASKKADELRVAAL 250 MEDFW+RAKSFAEE AKKSQTLT PNK+ADLVA+TAKKSKELA EA+KKADEL A K+AD++++ ++ Sbjct: 1 MEDFWKRAKSFAEEAAKKSQTLTSPNKLADLVAETAKKSKELAVEATKKADELKTAALKQADQIQIQSI 69
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: A0A0D2PWJ3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G175300 PE=4 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.010e-22 Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTMPNKIADLVADTAKKSKELAFEASKKADELALEASKKADELRVAAL 250 MEDFW+RAKSFAEE AKKSQTLT PNK+ADLVA+TAKKSKELA EA+KKADEL A K+AD++++ ++ Sbjct: 1 MEDFWKRAKSFAEEAAKKSQTLTSPNKLADLVAETAKKSKELAVEATKKADELKTAALKQADQIQIQSI 69
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: B9HWU3_POPTR (BSD domain-containing family protein OS=Populus trichocarpa GN=POPTR_0010s14770g PE=4 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 1.347e-21 Identity = 61/104 (58.65%), Postives = 73/104 (70.19%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTMP-NKIADLVADTAKKSKELAFEASKKADELALEASKKADELRVAALXXXXXXXXXXXXXXXXXXXXXPPQLSSLSIASSD 352 MED W RAK FAEE AKKSQTLT NKIADLVA+TAKKSKELA EASKKADE + A K+AD++++ ++ SDIIPPQLSSLSI +++ Sbjct: 1 MEDLWNRAKVFAEEAAKKSQTLTTSSNKIADLVAETAKKSKELALEASKKADEFKVAALKQADQIQIKSI-----------------SDIIPPQLSSLSIVNTN 87
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: A0A067K5A0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11782 PE=4 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.504e-21 Identity = 50/69 (72.46%), Postives = 59/69 (85.51%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTMPNKIADLVADTAKKSKELAFEASKKADELALEASKKADELRVAAL 250 MED W+RAK FAEETAKKSQTLT NKIADLVA+TAKKSKELA EASKKADEL A K+AD++++ ++ Sbjct: 1 MEDIWKRAKLFAEETAKKSQTLTSSNKIADLVAETAKKSKELALEASKKADELKTAALKQADQIQIKSI 69
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: A0A061EGZ4_THECC (BSD domain-containing protein, putative OS=Theobroma cacao GN=TCM_011442 PE=4 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 3.051e-20 Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTMPNKIADLVADTAKKSKELAFEASKKADELALEASKKAD 229 MEDFW+RAKSFAEE AKKSQ+L PNKIADLVA+TAKKSKELA EA+KKADEL A K+AD Sbjct: 1 MEDFWKRAKSFAEEAAKKSQSLATPNKIADLVAETAKKSKELALEATKKADELKTAALKQAD 62
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: B9HIU7_POPTR (BSD domain-containing family protein OS=Populus trichocarpa GN=POPTR_0008s11110g PE=4 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 6.771e-20 Identity = 58/104 (55.77%), Postives = 71/104 (68.27%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTMP-NKIADLVADTAKKSKELAFEASKKADELALEASKKADELRVAALXXXXXXXXXXXXXXXXXXXXXPPQLSSLSIASSD 352 MEDFW+RAK FAEE AKKSQT T N IADLV +TAKKSKELA EASK+AD+L + A K+AD ++ ++ SDIIPPQLSSLSI +++ Sbjct: 1 MEDFWKRAKVFAEEAAKKSQTFTTSSNTIADLVTETAKKSKELALEASKRADQLKIAALKQADSIQFKSI-----------------SDIIPPQLSSLSIVNTN 87
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: M5XHY2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020847mg PE=4 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 5.490e-19 Identity = 56/102 (54.90%), Postives = 70/102 (68.63%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTMPNKIADLVADTAKKSKELAFEASKKADELALEASKKADELRVAALXXXXXXXXXXXXXXXXXXXXXPPQLSSLSIASS 349 MED W+RAKSFAEE AKKSQTLT KI DLV++TAK+S+E A EASKKADE+ A K+AD+++ ++ S+IIPPQLSSLSI +S Sbjct: 1 MEDLWKRAKSFAEEAAKKSQTLTNSAKITDLVSETAKRSREFAAEASKKADEIKTAALKQADQIKSLSV-----------------SEIIPPQLSSLSIVNS 85 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0002791 ID=g.arboreum_cottongen_reftransV1_0002791; Name=g.arboreum_cottongen_reftransV1_0002791; organism=Gossypium arboreum; type=contig; length=352bpback to top |