g.arboreum_cottongen_reftransV1_0002791, g.arboreum_cottongen_reftransV1_0002791 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0002791
Unique Nameg.arboreum_cottongen_reftransV1_0002791
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length352
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold2748supercontigg.arboreum_cottongen_reftransV1_0002791:1..352 .
scaffold2748:30925..31276 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: Q941A9_ARATH (At1g26300/F28B23_4 OS=Arabidopsis thaliana GN=At1g26300 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.304e-15
Identity = 49/87 (56.32%), Postives = 56/87 (64.37%), Query Frame = 2
Query:   44 MEDFWQRAKSFAEETAKKSQTLTMPNK--IADLVADTAKKSKELAFEASKKAD----------------ELALEASKKADELRVAAL 250
            MED W+RAKSFAEE  KKSQT+T  +     +LV +TAKKSKELA EASKKAD                E A EASKKAD+ +VAAL
Sbjct:    1 MEDLWKRAKSFAEEAGKKSQTITQSSSATFVNLVTETAKKSKELALEASKKADQFNAADFVAETAKKSKEFAAEASKKADQFKVAAL 87          
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: A0A0A0KUC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606870 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.103e-15
Identity = 53/99 (53.54%), Postives = 66/99 (66.67%), Query Frame = 2
Query:   44 MEDFWQRAKSFAEETAKKSQTLTMPNKIADLVADTAKKSKELAFEASKKADELALEASKKADELRVAALXXXXXXXXXXXXXXXXXXXXXPPQLSSLSI 340
            MED W+RAKSFAEE AKKSQTLT  + +++LV++TAKKSKELA EASK AD +   A K+AD+L+   +                 SDIIPPQ SS+SI
Sbjct:    1 MEDLWKRAKSFAEEAAKKSQTLTSTSTLSELVSETAKKSKELAAEASKTADLIKTAAIKQADQLKSLNV-----------------SDIIPPQFSSISI 82          
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: Q9LQB6_ARATH (F4N2.1 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.040e-15
Identity = 47/88 (53.41%), Postives = 54/88 (61.36%), Query Frame = 2
Query:   44 MEDFWQRAKSFAEETAKKSQTLTM---PNKIADLVADTAKKSKELAFEASKKAD----------------ELALEASKKADELRVAAL 250
            MED W+RAKSFAEE AKKSQT+T+        +LV +TAKKSKE A EASKKAD                E A E S KAD+L+V AL
Sbjct:    1 MEDLWKRAKSFAEEAAKKSQTITLQSSSTTFVNLVTETAKKSKEFALEASKKADSINVSEFVAETAKKSKEFAAEVSTKADQLKVVAL 88          
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: D7KQR9_ARALL (BSD domain-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_472789 PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.663e-15
Identity = 48/87 (55.17%), Postives = 55/87 (63.22%), Query Frame = 2
Query:   44 MEDFWQRAKSFAEETAKKSQTLTMPNK--IADLVADTAKKSKELAFEASKKAD----------------ELALEASKKADELRVAAL 250
            MED W+RAKSFAEE  KKSQ +T  +     +LV +TAKKSKELA EASKKAD                E A EASKKAD+ +VAAL
Sbjct:    1 MEDLWKRAKSFAEEAGKKSQNITQSSSATFVNLVTETAKKSKELALEASKKADQLNVSDFVAETAKKSKEFAAEASKKADQFKVAAL 87          
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: D7KWX6_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_894683 PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.498e-15
Identity = 47/88 (53.41%), Postives = 55/88 (62.50%), Query Frame = 2
Query:   44 MEDFWQRAKSFAEETAKKSQTLTM---PNKIADLVADTAKKSKELAFEASKKAD----------------ELALEASKKADELRVAAL 250
            MED W+RAKSFAEE AKKSQT+T+        +LV++TAKKSKE A EASKKAD                E A E S KAD+L+V AL
Sbjct:    1 MEDLWKRAKSFAEEAAKKSQTITLQSSSTTFVNLVSETAKKSKEFALEASKKADSLNVSEFVAETAKKSKEFAAEVSTKADQLKVVAL 88          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
Q941A9_ARATH1.304e-1556.32At1g26300/F28B23_4 OS=Arabidopsis thaliana GN=At1g... [more]
A0A0A0KUC1_CUCSA2.103e-1553.54Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
Q9LQB6_ARATH5.040e-1553.41F4N2.1 OS=Arabidopsis thaliana PE=4 SV=1[more]
D7KQR9_ARALL6.663e-1555.17BSD domain-containing protein OS=Arabidopsis lyrat... [more]
D7KWX6_ARALL8.498e-1553.41Putative uncharacterized protein OS=Arabidopsis ly... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31923:SF7BSD DOMAIN-CONTAINING PROTEINcoord: 1..103
NoneNo IPR availablePANTHERPTHR31923FAMILY NOT NAMEDcoord: 1..103

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0002791 ID=g.arboreum_cottongen_reftransV1_0002791; Name=g.arboreum_cottongen_reftransV1_0002791; organism=Gossypium arboreum; type=contig; length=352bp
AGAAGATCAAAAGAATCAAATCCATCCGATTCAAATCCCAAAAATGGAAG
ATTTTTGGCAGCGCGCCAAGTCCTTCGCGGAAGAAACGGCGAAGAAATCT
CAGACCCTAACAATGCCAAACAAAATCGCGGATCTAGTCGCCGACACCGC
TAAGAAGTCCAAGGAGCTTGCTTTTGAAGCCTCCAAGAAAGCCGATGAGC
TGGCTCTTGAAGCTTCCAAAAAGGCCGATGAGCTCAGAGTCGCCGCTCTC
AAACAAGCCGATCAAATCCAACTCCAAAGCCAAAGTCTCTCCAAGTCCAT
TTCCGACATTATCCCTCCTCAACTCTCCTCCCTCTCCATTGCCTCCTCGG
AT
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