g.arboreum_cottongen_reftransV1_0002791, g.arboreum_cottongen_reftransV1_0002791 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: Q941A9_ARATH (At1g26300/F28B23_4 OS=Arabidopsis thaliana GN=At1g26300 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.304e-15 Identity = 49/87 (56.32%), Postives = 56/87 (64.37%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTMPNK--IADLVADTAKKSKELAFEASKKAD----------------ELALEASKKADELRVAAL 250 MED W+RAKSFAEE KKSQT+T + +LV +TAKKSKELA EASKKAD E A EASKKAD+ +VAAL Sbjct: 1 MEDLWKRAKSFAEEAGKKSQTITQSSSATFVNLVTETAKKSKELALEASKKADQFNAADFVAETAKKSKEFAAEASKKADQFKVAAL 87
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: A0A0A0KUC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606870 PE=4 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.103e-15 Identity = 53/99 (53.54%), Postives = 66/99 (66.67%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTMPNKIADLVADTAKKSKELAFEASKKADELALEASKKADELRVAALXXXXXXXXXXXXXXXXXXXXXPPQLSSLSI 340 MED W+RAKSFAEE AKKSQTLT + +++LV++TAKKSKELA EASK AD + A K+AD+L+ + SDIIPPQ SS+SI Sbjct: 1 MEDLWKRAKSFAEEAAKKSQTLTSTSTLSELVSETAKKSKELAAEASKTADLIKTAAIKQADQLKSLNV-----------------SDIIPPQFSSISI 82
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: Q9LQB6_ARATH (F4N2.1 OS=Arabidopsis thaliana PE=4 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 5.040e-15 Identity = 47/88 (53.41%), Postives = 54/88 (61.36%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTM---PNKIADLVADTAKKSKELAFEASKKAD----------------ELALEASKKADELRVAAL 250 MED W+RAKSFAEE AKKSQT+T+ +LV +TAKKSKE A EASKKAD E A E S KAD+L+V AL Sbjct: 1 MEDLWKRAKSFAEEAAKKSQTITLQSSSTTFVNLVTETAKKSKEFALEASKKADSINVSEFVAETAKKSKEFAAEVSTKADQLKVVAL 88
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: D7KQR9_ARALL (BSD domain-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_472789 PE=4 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.663e-15 Identity = 48/87 (55.17%), Postives = 55/87 (63.22%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTMPNK--IADLVADTAKKSKELAFEASKKAD----------------ELALEASKKADELRVAAL 250 MED W+RAKSFAEE KKSQ +T + +LV +TAKKSKELA EASKKAD E A EASKKAD+ +VAAL Sbjct: 1 MEDLWKRAKSFAEEAGKKSQNITQSSSATFVNLVTETAKKSKELALEASKKADQLNVSDFVAETAKKSKEFAAEASKKADQFKVAAL 87
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: D7KWX6_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_894683 PE=4 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 8.498e-15 Identity = 47/88 (53.41%), Postives = 55/88 (62.50%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTM---PNKIADLVADTAKKSKELAFEASKKAD----------------ELALEASKKADELRVAAL 250 MED W+RAKSFAEE AKKSQT+T+ +LV++TAKKSKE A EASKKAD E A E S KAD+L+V AL Sbjct: 1 MEDLWKRAKSFAEEAAKKSQTITLQSSSTTFVNLVSETAKKSKEFALEASKKADSLNVSEFVAETAKKSKEFAAEVSTKADQLKVVAL 88 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0002791 ID=g.arboreum_cottongen_reftransV1_0002791; Name=g.arboreum_cottongen_reftransV1_0002791; organism=Gossypium arboreum; type=contig; length=352bpback to top |